BAC Information

Click to search

BAC

Clone NameB6Ng01-226P01
Chromosome3 (Build37)11 (Build37)
Map Location 124,104,215 - 124,105,36020,492,312 - 20,492,381
singlet/doubletsingletsinglet
Overlap gene1700006A11Rik
Upstream genePrss12, EG668804, Ndst3, LOC100043333, EG668809, Tram1l1, LOC100043740
Downstream gene1700003H04Rik, LOC668817, LOC668820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226P01.bB6Ng01-226P01.g
ACCGA040740GA040741
length1,128272
definitionB6Ng01-226P01.b B6Ng01-226P01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(124,104,215 - 124,105,360)(20,492,312 - 20,492,381)
sequence
gaattcaatgtagtcctggggattcaagtattcagttgctgagaaaaaaa
tttctccatccagaagctatttggccaatccggttgctgcttgtcaagtc
tccttctgcagtcgtttctgcagaaaaggaaatgattgagggggttgttc
tgttttcattgcaaaagaaacataaatgttattttgatacagatattctc
aggttatagattcctctcaatttagataaaacatatatcaaaccaagaaa
agtcaactatgaatatcatccacactctgcacagtgaactgtttatgttc
gctctaaacccatccctaagtggtattaatttttgactcagggatgttct
tgcctctttatcattcttaatgcattcattgtagtggattctgcatcatt
taatacttacaccaatgctaagcatttgaaaaaatttatctttcctctga
aatcaaaccagcaatactgttgcacaaggatagtgtggttcgtagatggt
ggcatagagctttatcttccagaatggttgattgattttaaatcattgtt
tctaattgattcttttaaaaaggataattttattatctgagatatcttac
atgactcttgaaccagagggaagaaaggtaagaaatgatagtagactata
ttctgatatccttgcagggactaaagtaggactacatctatcatatatac
atatgtatatatctaaatattcatatgcatgtatgtgtgtaattgtctgt
gtatctatatatgtgtatatatgaatttatatgtaattaaattaaaggat
ttttaaactcccccaatgttttcatatcatgctgtgtcccaatgctgctg
tgatgttacaactttcttaaatgggggaataattcatcgttcaatgtatt
tgataactatttaaaaacttccgttaccgctgagatcttctgcctgggga
gaagcagatagatcctcttcattgtttttggggaggtgtgtcttttccat
atgacagctgctttactgtcacctctggcatcgtcatttattagagtcag
caccattatcagagctagcttttcttatggtcactgcactcttggaactc
tcataaaacgattgcatcttctcatatc

tcttttttccttttactgaaatatatttaaaatggatttttctcacctaa
tatattctgattatgatttcctaagtaaaacaaacaaacaaacaaacaaa
gaacaacaaaaccgaaaaacaaaaaacaaacaaaaaacaaaaaacaagga
aaagagcccaagaaaaggtcctagaaacagttttagatgtaaagactcac
tagtttacatagtcaggaatttcataaaaacacgagagaaagagaaagag
ggagggagggaaggagggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_124104215_124105360
seq2: B6Ng01-226P01.b_42_1169

seq1  GAATTCAATGTAGTCCTGGGGATTCAAGTATTCAGTTGCTGAGAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTAGTCCTGGGGATTCAAGTATTCAGTTGCTGAGAAAAAAA  50

seq1  TTTCTCCATCCAGAAGCTATTTGGCCAATCCGGTTGCTGCTTGTCAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCATCCAGAAGCTATTTGGCCAATCCGGTTGCTGCTTGTCAAGTC  100

seq1  TCCTTCTGCAGTCGTTTCTGCAGAAAAGGAAATGATTGAGGGGGTTGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGCAGTCGTTTCTGCAGAAAAGGAAATGATTGAGGGGGTTGTTC  150

seq1  TGTTTTCATTGCAAAAGAAACATAAATGTTATTTTGATACAGATATTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCATTGCAAAAGAAACATAAATGTTATTTTGATACAGATATTCTC  200

seq1  AGGTTATAGATTCCTCTCAATTTAGATAAAACATATATCAAACCAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATAGATTCCTCTCAATTTAGATAAAACATATATCAAACCAAGAAA  250

seq1  AGTCAACTATGAATATCATCCACACTCTGCACAGTGAACTGTTTATGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACTATGAATATCATCCACACTCTGCACAGTGAACTGTTTATGTTC  300

seq1  GCTCTAAACCCATCCCTAAGTGGTATTAATTTTTGACTCAGGGATGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAACCCATCCCTAAGTGGTATTAATTTTTGACTCAGGGATGTTCT  350

seq1  TGCCTCTTTATCATTCTTAATGCATTCATTGTAGTGGATTCTGCATCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTTTATCATTCTTAATGCATTCATTGTAGTGGATTCTGCATCATT  400

seq1  TAATACTTACACCAATGCTAAGCATTTGAAAAAATTTATCTTTCCTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTTACACCAATGCTAAGCATTTGAAAAAATTTATCTTTCCTCTGA  450

seq1  AATCAAACCAGCAATACTGTTGCACAAGGATAGTGTGGTTCGTAGATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACCAGCAATACTGTTGCACAAGGATAGTGTGGTTCGTAGATGGT  500

seq1  GGCATAGAGCTTTATCTTCCAGAATGGTTGATTGATTTTAAATCATTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGAGCTTTATCTTCCAGAATGGTTGATTGATTTTAAATCATTGTT  550

seq1  TCTAATTGATTCTTTTAAAAAGGATAATTTTATTATCTGAGATATCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTGATTCTTTTAAAAAGGATAATTTTATTATCTGAGATATCTTAC  600

seq1  ATGACTCTTGAACCAGAGGGAAGAAAGGTAAGAAATGATAGTAGACTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCTTGAACCAGAGGGAAGAAAGGTAAGAAATGATAGTAGACTATA  650

seq1  TTCTGATATCCTTGCAGGGACTAAAGTAGGACTACATCTATCATATATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATATCCTTGCAGGGACTAAAGTAGGACTACATCTATCATATATAC  700

seq1  ATATGTATATATCTAAATATTCATATGCATGTATGTGTGTAATTGTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATATATCTAAATATTCATATGCATGTATGTGTGTAATTGTCTGT  750

seq1  GTATCTATATATGTGTATATATGAATTTATATGTAATTAAATTAAAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTATATATGTGTATATATGAATTTATATGTAATTAAATTAAAGGAT  800

seq1  TTTTAAACTCCCCCAATGTTTTCATATCATGCTGTGTCCCAATGCTGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACTCCCCCAATGTTTTCATATCATGCTGTGTCCCAATGCTGCTG  850

seq1  TGATGTTACAACTTTCTTAAATGGGGGAATAATTCATCGTTCAATGTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTACAACTTTCTTAAATGGGGGAATAATTCATCGTTCAATGTATT  900

seq1  TGATAACTATTTAAAAACTTCCGTTACCGCTGAGATCTTCTGCCTGGGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACTATTTAAAAACTTCCGTTACCGCTGAGATCTTCTGCCTGGGGA  950

seq1  GAAGCAGATAGATCCTCTTCATTGTTTTTTGGGGAGGTGTGTCTTTTCAA  1000
      |||||||||||||||||||||||| ||||||||||||||||||||||| |
seq2  GAAGCAGATAGATCCTCTTCATTG-TTTTTGGGGAGGTGTGTCTTTTCCA  999

seq1  TATGACAGCTGCCTTTACTGTCACCTCTGGCATTCGTCATTTTATTAGAG  1050
      ||||||||||| |||||||||||||||||||| |||||| ||||||||||
seq2  TATGACAGCTG-CTTTACTGTCACCTCTGGCA-TCGTCA-TTTATTAGAG  1046

seq1  TCAGCACCATTATTCAAGGAAGCTAAAGCTTTTTCTAT-GTCACTGCAAC  1099
      |||||||||||| |||    ||||  |||||||  ||| |||||||| ||
seq2  TCAGCACCATTA-TCA---GAGCT--AGCTTTTCTTATGGTCACTGC-AC  1089

seq1  TCTTTGGGAACTCTCCATAAAACACGATGGCATCTTCTCCAAATATC  1146
      ||||  |||||||| ||||||  ||||| ||||||||||   |||||
seq2  TCTT--GGAACTCT-CATAAA--ACGATTGCATCTTCTC---ATATC  1128


seq1: chr11_20492312_20492381
seq2: B6Ng01-226P01.g_304_342 (reverse)

seq1  CCCTCCCTCCTTCCCTCCCTCCCTCCCTCTACCTCCCCCTCTCCCTCCCT  50
                          ||||||||         ||| |||||||||
seq2  --------------------CCCTCCCT---------CCT-TCCCTCCCT  20

seq1  CCTCTCTTTCTCTTTCTCTC  70
      || |||||||||||||||||
seq2  CC-CTCTTTCTCTTTCTCTC  39


| Home | SequenceCutter | Blast | Download |