BAC Information

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BAC

Clone NameB6Ng01-227E10
Chromosome11 (Build37)
Map Location 30,345,650 - 30,346,840
singlet/doubletsinglet
Overlap gene4930505A04Rik
Upstream geneA430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432
Downstream geneAcyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227E10.bB6Ng01-227E10.g
ACCGA040988GA040989
length1,1751,201
definitionB6Ng01-227E10.b B6Ng01-227E10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatactaaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
ttcacctctcaccagtcagaatggctaaggtcaaaaactcaggtgacagt
agatgctggcaaggatgtggaaaaagaggaacacttctctattgcttttg
ggattgtatgctggtactgctactctggaaatctgtctggaggttcctca
gaaaattggacatagtactactggaagatccaacaataccactattggtc
atatacccagaagatgttctaacttgtaataaggacccatcctctactat
gttcatagcagccttatttataatagccagatattggaaagaactcagat
gtccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtagtactcagctattaaaaagaatgaatttatgaaattcttaggcaa
atggatgtttctggaagatatcatcttgagtgaggtcatccaatcacaaa
agaacacacttgatatgtactcactgataagtggatattatcccagaaac
ttagaatacccaagatacaatttgcaaaaacacatgaaaatcaagaagaa
ggaagaccaaagtgtggctactttgttccttcttagaagggggaccaaaa
tacccatggaaggaattacagagacaaatttcagagttgagactgaaaga
aggaccctccagagactgtcttaccctgggatccatcccataaacaacca
ccaaacccagacactattgcatatagcaacaagatttttctggcagtact
ctgatatagctgtctcctgtgaggctatgtcagtgcctagcaaattcaga
agtggatcctcacatctattgggatggaacacagggttccccaatgaagg
agctagagaaagtaccgaaggatctgaagtggtctgcagccctataggag
aaacacaatataaactaaccagtacccccagagcttgtgtttctagctgc
atatgtagcagagggatgctagtcgcatcactgggaggagaggcccttct
ctgagagattctaagctccagtataggtattgcaggctgaaagtgggatg
ctggctgggtaacgggggaggggaa
gaattcattttggtttacagttccagaagaatggagcccatcatgggagg
gaaatcatgctggcagatgtttgaagctagatagtcatactgtattgaca
ggaggtagtaaaagaaccagaagagagattgggctatcctaagtgtggga
tagtgtgcaatgtaaaggctctacaaagatatgactggctggagatccaa
tggcttccaagggacatttcacaaaccacagcaatcagtgcccctcagag
tatactttgagatactgccagttagagtcggattctattttaatagttac
agtttttagaatttgatgggaaagctgagcagacttctaagtttctgact
ttgaagttggtgtaatcaatggtctgtacagtatctagagctactggact
ggagagactttctctgggaagaaacaacaggcttttagaggaccatatat
gttgtgtatgtattttcaacttctatagagaagtctttttttttttcagg
aggtgcacatgcactgaatgtatcttaattcaatagcaggaaagagagta
ataaagttttcgcatggataaccttacctattccacaagaaggcttttgc
atccggctgtgtttgactggcaaaaccaatgggcatgctggcttctggaa
gtcactccgctggacacttttggtgtcataagatggttgggagacatgtt
ttggtgcttcattatggaaccaccattttctcttcacagaaaaaaaatgg
aaatgcactgtcaaataatgatggaaattttcatttgatgcttaaagtct
atgaatattcagtgatttaatgtaacaagatattagtgtagaattattat
tcactttgtgtatggtttgttcgtatgatgtatatgttgcatgtaatact
catgaagaggacatgccatagggcacctttcctcagctgcacttccattt
tgtttattgcgatggggtcttaccactgaacctgaagcttatgcaattcc
agcccagtttgggttgtctagtgagcttccagggatctgcttattcttct
gtctttctctcctcatatgtcccatcctggtccccagcagtgtattaaca
gcaatttctatatctcttgggaattctaagctcagaattctcattgttaa
caccacacgtactgagatgtttctgcttgctcaggattgaacacctggtt
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_30345650_30346840
seq2: B6Ng01-227E10.g_69_1269

seq1  GAATTCATTTTGGTTTACAGTTCCAGAAGAATGGAGCCCATCATGGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGGTTTACAGTTCCAGAAGAATGGAGCCCATCATGGGAGG  50

seq1  GAAATCATGCTGGCAGATGTTTGAAGCTAGATAGTCATACTGTATTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATGCTGGCAGATGTTTGAAGCTAGATAGTCATACTGTATTGACA  100

seq1  GGAGGTAGTAAAAGAACCAGAAGAGAGATTGGGCTATCCTAAGTGTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAGTAAAAGAACCAGAAGAGAGATTGGGCTATCCTAAGTGTGGGA  150

seq1  TAGTGTGCAATGTAAAGGCTCTACAAAGATATGACTGGCTGGAGATCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGCAATGTAAAGGCTCTACAAAGATATGACTGGCTGGAGATCCAA  200

seq1  TGGCTTCCAAGGGACATTTCACAAACCACAGCAATCAGTGCCCCTCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCAAGGGACATTTCACAAACCACAGCAATCAGTGCCCCTCAGAG  250

seq1  TATACTTTGAGATACTGCCAGTTAGAGTCGGATTCTATTTTAATAGTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTGAGATACTGCCAGTTAGAGTCGGATTCTATTTTAATAGTTAC  300

seq1  AGTTTTTAGAATTTGATGGGAAAGCTGAGCAGACTTCTAAGTTTCTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTAGAATTTGATGGGAAAGCTGAGCAGACTTCTAAGTTTCTGACT  350

seq1  TTGAAGTTGGTGTAATCAATGGTCTGTACAGTATCTAGAGCTACTGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTGGTGTAATCAATGGTCTGTACAGTATCTAGAGCTACTGGACT  400

seq1  GGAGAGACTTTCTCTGGGAAGAAACAACAGGCTTTTAGAGGACCATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGACTTTCTCTGGGAAGAAACAACAGGCTTTTAGAGGACCATATAT  450

seq1  GTTGTGTATGTATTTTCAACTTCTATAGAGAAGTCTTTTTTTTTTTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTATGTATTTTCAACTTCTATAGAGAAGTCTTTTTTTTTTTCAGG  500

seq1  AGGTGCACATGCACTGAATGTATCTTAATTCAATAGCAGGAAAGAGAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCACATGCACTGAATGTATCTTAATTCAATAGCAGGAAAGAGAGTA  550

seq1  ATAAAGTTTTCGCATGGATAACCTTACCTATTCCACAAGAAGGCTTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTTTCGCATGGATAACCTTACCTATTCCACAAGAAGGCTTTTGC  600

seq1  ATCCGGCTGTGTTTGACTGGCAAAACCAATGGGCATGCTGGCTTCTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGGCTGTGTTTGACTGGCAAAACCAATGGGCATGCTGGCTTCTGGAA  650

seq1  GTCACTCCGCTGGACACTTTTGGTGTCATAAGATGGTTGGGAGACATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCCGCTGGACACTTTTGGTGTCATAAGATGGTTGGGAGACATGTT  700

seq1  TTGGTGCTTCATTATGGAACCACCATTTTCTCTTCACAGAAAAAAAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCTTCATTATGGAACCACCATTTTCTCTTCACAGAAAAAAAATGG  750

seq1  AAATGCACTGTCAAATAATGATGGAAATTTTCATTTGATGCTTAAAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCACTGTCAAATAATGATGGAAATTTTCATTTGATGCTTAAAGTCT  800

seq1  ATGAATATTCAGTGATTTAATGTAACAAGATATTAGTGTAGAATTATTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATTCAGTGATTTAATGTAACAAGATATTAGTGTAGAATTATTAT  850

seq1  TCACTTTGTGTATGGTTTGTTCGTATGATGTATATG-TGCATGTAATACT  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCACTTTGTGTATGGTTTGTTCGTATGATGTATATGTTGCATGTAATACT  900

seq1  CATGAAGAGGACATGCCATAGGGCACC-TTCCTCAGCTGCACTTCCATTT  948
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CATGAAGAGGACATGCCATAGGGCACCTTTCCTCAGCTGCACTTCCATTT  950

seq1  TGTTTATTGCGATGGGGTC-TACCACTGAACCTGAAGC-TATGCAA-TCC  995
      ||||||||||||||||||| |||||||||||||||||| ||||||| |||
seq2  TGTTTATTGCGATGGGGTCTTACCACTGAACCTGAAGCTTATGCAATTCC  1000

seq1  AGCCCAGTT--GGGTGTCTAGTGAGC-TCCAGGGATCTGCTTAT--CTCT  1040
      |||||||||  || |||||||||||| |||||||||||||||||   |||
seq2  AGCCCAGTTTGGGTTGTCTAGTGAGCTTCCAGGGATCTGCTTATTCTTCT  1050

seq1  GTC-TTCTCCTCTCATTATGTTCCCATCCTGGTCCCCCAGCAGTGGTATT  1089
      ||| |||||  |||| |||| |||||||||||| |||||||||| |||||
seq2  GTCTTTCTCTCCTCA-TATG-TCCCATCCTGGT-CCCCAGCAGT-GTATT  1096

seq1  -ACAGGCATTTCTA----TCTTGGGGA-TCCAAGCTCAG-ATTCTCA-TG  1131
       ||||  |||||||    ||||||| | || |||||||| ||||||| ||
seq2  AACAGCAATTTCTATATCTCTTGGGAATTCTAAGCTCAGAATTCTCATTG  1146

seq1  GTAACA-CACACGTTACTGAGGAAATG-TTCTGCCTGGCTCAGGAGTTTG  1179
       ||||| |||||| |||||||   ||| ||||| || ||||||||  |||
seq2  TTAACACCACACG-TACTGAG---ATGTTTCTG-CTTGCTCAGGA--TTG  1189

seq1  AACACTTGGTTC  1191
      ||||| ||||||
seq2  AACACCTGGTTC  1201