BAC Information

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BAC

Clone NameB6Ng01-227K02
Chromosome11 (Build37)
Map Location 92,639,517 - 92,816,211
singlet/doubletdoublet
Overlap geneLOC382545
Upstream genenone
Downstream geneLOC100039286, Car10, LOC629636, Utp18, Mbtd1, Nme2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227K02.bB6Ng01-227K02.g
ACCGA041253GA041254
length1,1371,148
definitionB6Ng01-227K02.b B6Ng01-227K02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,639,517 - 92,640,659)(92,815,064 - 92,816,211)
sequence
gaattccctgtattagtctaaccaagcaactaaacagagagaacaaatgc
caaggttggaaaaagcaaagttttggtattcggaattgctacaatatcta
atgtgtatggttcaattgtttaaagtgaaacacatcaataaacagggtat
tgtgaataaaatgtttacactttataaaaaaaagaaaatatctaataaaa
agttttaaaaaataattttttttcaggtttctctcccctccctccccaaa
aagataaaggcagataaaacagaaaaaagcaaagggttataataaaggcc
actctggtgtgttccacaaatcaagagtgtcacattactggagaacatga
aggaaggcagaaattgagcctcatctcactagaatgcatttggcaacaca
tgtctctacgttgcctttgtacattaacattttagaagtttccctacaga
ttttttttttttttgagtattacagtgactactcccaattggccttcttg
ctattatctatcttcctagaagttttacattgataatatctgtaaagtca
agtcctaagcatatacattcaagtttgtctgaaatgttgcaaaaatggtt
gccttaattaaaaaaggtaggagaccatttaatgactagggaagttacca
aaaactgttagaataacaccaaaaggcagaaacgtgctgagcggacgtaa
ggctgggaaggctgttgtgctttggggatggaacattgtaacagcctatg
gccaagtccatatcagttctgctatcacagcaggcaatcttagtatttgt
aaacaaaattctaccctcctgttccaccttctagaactagtccttccctg
gaagatgttaaagtataacttatgcaggactatgagaaatataactatta
atgctttctgcctatttaagattgggcactaagattcaacagagggcata
gctctttaaggcaagtcagctaccaggggacagagagttatctgagaacc
caatgtttaaattgaacgatcttcaacaagagtcaggtgactggaaagaa
gcttgaaatattctcttgagactagtgttttaatctgatcattcttacta
tagacaagaaattctatattattgagtagtaatatta

gaattcctggtctcaagctgtcttctttccaacggaacttgaaacagtgt
cttctggacatgacataaccattgtattcatgaactcaaaatatctgtgg
gaacttgcagtcgacctgtacatgattgtgcctgtcaaacatggaggtcc
ttgtgaggtccaatctcttcttgtgttttgacacttaatgtttactggag
gaggaaggccaatctttgtttagtgatgtcgccattgataagttgtccaa
gctgtagtaaataactcagactctgagcaataaaaaggtccttatcatta
aaaatatgtcaacattgaaattagacttcagaatccatattaattagttc
ataggatataatgcagttataatatttacaaagtcaaatattactgtact
tgatcaaaatcaaagaagaaatatgtgataggtaggagacatttgacaga
cactgcccttattcagaaaacagataatgagtttgctggatgcacaacta
gatttttggtatgtttttgtaaagtaaaagttatctaaaggtcaactctg
gaagacctctatttttatttttgtttgttttttaaaatttattttatttt
attggatattttatttatttacatttcaaatgttatcccctttcctggtt
tcccctccggaaaccccctatcccatctcccctttccctgcttctatgag
ggcgctcatccacccacctaccctcccactcagttctaaagttttggatt
attcaaagtgtaaaaaaggcaaaatacagggaacaaaaagagaggtgtac
cataaagcaaacattaacaccctcaaacacctattaagactacaacaaaa
ccaggtgcatgaagttaaagaaaaaaaaagtttctccttaggaagtcttg
agtcaacccaaggtattccaagggccttaaatccatgaccacagtgggct
ttgttggtggtttcatttagaaaacattctactgtagtataagaaaagaa
aatattttttttttcccttcagaacttctgtgcctcaagctcacaattct
actacctgaaaaagctggccattgctctcatgattccagtggactcctct
agcatgaactgcctgagaaatggttccatgacctaatcgcctaacagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_92639517_92640659
seq2: B6Ng01-227K02.b_45_1181

seq1  GAATTCCCTGTATTAGTCTAACCAAGCAACTAAACAGAGAGAACAAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTATTAGTCTAACCAAGCAACTAAACAGAGAGAACAAATGC  50

seq1  CAAGGTTGGAAAAAGCAAAGTTTTGGTATTCGGAATTGCTACAATATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTGGAAAAAGCAAAGTTTTGGTATTCGGAATTGCTACAATATCTA  100

seq1  ATGTGTATGGTTCAATTGTTTAAAGTGAAACACATCAATAAACAGGGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATGGTTCAATTGTTTAAAGTGAAACACATCAATAAACAGGGTAT  150

seq1  TGTGAATAAAATGTTTACACTTTATAAAAAAAAGAAAATATCTAATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATAAAATGTTTACACTTTATAAAAAAAAGAAAATATCTAATAAAA  200

seq1  AGTTTTAAAAAATAATTTTTTTTCAGGTTTCTCTCCCCTCCCTCCCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAAAAATAATTTTTTTTCAGGTTTCTCTCCCCTCCCTCCCCAAA  250

seq1  AAGATAAAGGCAGATAAAACAGAAAAAAGCAAAGGGTTATAATAAAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAGGCAGATAAAACAGAAAAAAGCAAAGGGTTATAATAAAGGCC  300

seq1  ACTCTGGTGTGTTCCACAAATCAAGAGTGTCACATTACTGGAGAACATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGTGTGTTCCACAAATCAAGAGTGTCACATTACTGGAGAACATGA  350

seq1  AGGAAGGCAGAAATTGAGCCTCATCTCACTAGAATGCATTTGGCAACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGCAGAAATTGAGCCTCATCTCACTAGAATGCATTTGGCAACACA  400

seq1  TGTCTCTACGTTGCCTTTGTACATTAACATTTTAGAAGTTTCCCTACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTACGTTGCCTTTGTACATTAACATTTTAGAAGTTTCCCTACAGA  450

seq1  TTTTTTTTTTTTTTGAGTATTACAGTGACTACTCCCAATTGGCCTTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTGAGTATTACAGTGACTACTCCCAATTGGCCTTCTTG  500

seq1  CTATTATCTATCTTCCTAGAAGTTTTACATTGATAATATCTGTAAAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATCTATCTTCCTAGAAGTTTTACATTGATAATATCTGTAAAGTCA  550

seq1  AGTCCTAAGCATATACATTCAAGTTTGTCTGAAATGTTGCAAAAATGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAAGCATATACATTCAAGTTTGTCTGAAATGTTGCAAAAATGGTT  600

seq1  GCCTTAATTAAAAAAGGTAGGAGACCATTTAATGACTAGGGAAGTTACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAATTAAAAAAGGTAGGAGACCATTTAATGACTAGGGAAGTTACCA  650

seq1  AAAACTGTTAGAATAACACCAAAAGGCAGAAACGTGCTGAGCGGACGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTTAGAATAACACCAAAAGGCAGAAACGTGCTGAGCGGACGTAA  700

seq1  GGCTGGGAAGGCTGTTGTGCTTTGGGGATGGAACATTGTAACAGCCTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGAAGGCTGTTGTGCTTTGGGGATGGAACATTGTAACAGCCTATG  750

seq1  GCCAAGTCCATATCAGTTCTGCTATCACAGCA-GCAATCTTAGTATTTGT  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCCAAGTCCATATCAGTTCTGCTATCACAGCAGGCAATCTTAGTATTTGT  800

seq1  AAACAAAATTCTACCCTCCTGTTCCACCTTCTAGAACTAGTCCTTCCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATTCTACCCTCCTGTTCCACCTTCTAGAACTAGTCCTTCCCTG  850

seq1  GAAGATGTTAAAGTATAACTTATGCAAGGACTATGAGAAATATAACTA-T  898
      ||||||||||||||||||||||||| |||||||||||||||||||||| |
seq2  GAAGATGTTAAAGTATAACTTATGC-AGGACTATGAGAAATATAACTATT  899

seq1  AATGC-TTCTGCCTATTTAAGATT-GGCACTAAGATTCAACAGAGGGCAT  946
      ||||| |||||||||||||||||| |||||||||||||||||||||||||
seq2  AATGCTTTCTGCCTATTTAAGATTGGGCACTAAGATTCAACAGAGGGCAT  949

seq1  AGCTC-TTAAGGCAAGTCAGCTACCCAGGGACAGAGAGTTATCTGAGAAC  995
      ||||| |||||||||||||||||||  |||||||||||||||||||||||
seq2  AGCTCTTTAAGGCAAGTCAGCTACCAGGGGACAGAGAGTTATCTGAGAAC  999

seq1  CCAATG-TTAAAATGAACGATC-TCAACAAGAGTCAGGTGACTGGGAAAG  1043
      |||||| ||||| ||||||||| |||||||||||||||||||||| ||  
seq2  CCAATGTTTAAATTGAACGATCTTCAACAAGAGTCAGGTGACTGGAAAGA  1049

seq1  AGCTTGAAAATAATTCTC-TGAGACTAGTGTTTAATTCTGATCCAATTCC  1092
      |||||||||   |||||| |||||||||||||| | |||||||  |||| 
seq2  AGCTTGAAA--TATTCTCTTGAGACTAGTGTTTTAATCTGATC--ATTC-  1094

seq1  TTTAACTATAAGAACAAAGAAAATCTATAATTTATTGAGTAGTAAATATT  1142
        | ||||| |||   |||||| ||||||  |||||||||||| ||||||
seq2  --TTACTAT-AGA--CAAGAAATTCTATA--TTATTGAGTAGT-AATATT  1136

seq1  A  1143
      |
seq2  A  1137


seq1: chr11_92815064_92816211
seq2: B6Ng01-227K02.g_67_1214 (reverse)

seq1  ACTGTTAGGCGAAATTAGGTCATGTGACCATTTCTCAGCCAGTCACTGCT  50
      |||||||||||  |||||||||||  |||||||||||| ||||   ||||
seq2  ACTGTTAGGCG--ATTAGGTCATGGAACCATTTCTCAGGCAGTTCATGCT  48

seq1  AAGGAAGAGTTCCACTGGATTCATGAGAGCAATTGCCAGCTTTTTCAGGG  100
      |  || ||| ||||||||| ||||||||||||| ||||||||||||| ||
seq2  A--GAGGAG-TCCACTGGAATCATGAGAGCAATGGCCAGCTTTTTCA-GG  94

seq1  TAGTAGAATTGTGAGCCTGAGGCACAG-AGGTCTGA--GGGAAAAAAAAA  147
      |||||||||||||||| |||||||||| || |||||  || |||||||||
seq2  TAGTAGAATTGTGAGCTTGAGGCACAGAAGTTCTGAAGGGAAAAAAAAAA  144

seq1  TATTT--CTTTCTTATACTACAGTAGAATGTTTTCTAAATG-AACCACCA  194
      |||||   ||||||||||||||||||||||||||||||||| ||||||||
seq2  TATTTTCTTTTCTTATACTACAGTAGAATGTTTTCTAAATGAAACCACCA  194

seq1  ACAAAGCCCACTGTGGTCATGGATTTAAGG-CCTTGGAATACCTTTGGGT  243
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  ACAAAGCCCACTGTGGTCATGGATTTAAGGCCCTTGGAATACC-TTGGGT  243

seq1  TGACTCAAGACTTCCTAAGGAGAAAC-TTTTTTTTCTTTAACTTTCATGC  292
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  TGACTCAAGACTTCCTAAGGAGAAACTTTTTTTTTCTTTAAC-TTCATGC  292

seq1  ACCTGGTTTTGTTGTAGTCTTAATAGGTGTTTGAGGGTGTTAATGTTTGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTTTTGTTGTAGTCTTAATAGGTGTTTGAGGGTGTTAATGTTTGC  342

seq1  TTTATGGTACACCTCTCTTTTTGTTCCCTGTATTTTGCCTTTTTTACACT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTACACCTCTCTTTTTGTTCCCTGTATTTTGCCTTTTTTACACT  392

seq1  TTGAATAATCCAAAACTTTAGAACTGAGTGGGAGGGTAGGTGGGTGGATG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAATCCAAAACTTTAGAACTGAGTGGGAGGGTAGGTGGGTGGATG  442

seq1  AGCGCCCTCATAGAAGCAGGGAAAGGGGAGATGGGATAGGGGGTTTCCGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCCTCATAGAAGCAGGGAAAGGGGAGATGGGATAGGGGGTTTCCGG  492

seq1  AGGGGAAACCAGGAAAGGGGATAACATTTGAAATGTAAATAAATAAAATA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAACCAGGAAAGGGGATAACATTTGAAATGTAAATAAATAAAATA  542

seq1  TCCAATAAAATAAAATAAATTTTAAAAAACAAACAAAAATAAAAATAGAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAAAATAAAATAAATTTTAAAAAACAAACAAAAATAAAAATAGAG  592

seq1  GTCTTCCAGAGTTGACCTTTAGATAACTTTTACTTTACAAAAACATACCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCAGAGTTGACCTTTAGATAACTTTTACTTTACAAAAACATACCA  642

seq1  AAAATCTAGTTGTGCATCCAGCAAACTCATTATCTGTTTTCTGAATAAGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTAGTTGTGCATCCAGCAAACTCATTATCTGTTTTCTGAATAAGG  692

seq1  GCAGTGTCTGTCAAATGTCTCCTACCTATCACATATTTCTTCTTTGATTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTCTGTCAAATGTCTCCTACCTATCACATATTTCTTCTTTGATTT  742

seq1  TGATCAAGTACAGTAATATTTGACTTTGTAAATATTATAACTGCATTATA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAGTACAGTAATATTTGACTTTGTAAATATTATAACTGCATTATA  792

seq1  TCCTATGAACTAATTAATATGGATTCTGAAGTCTAATTTCAATGTTGACA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGAACTAATTAATATGGATTCTGAAGTCTAATTTCAATGTTGACA  842

seq1  TATTTTTAATGATAAGGACCTTTTTATTGCTCAGAGTCTGAGTTATTTAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAATGATAAGGACCTTTTTATTGCTCAGAGTCTGAGTTATTTAC  892

seq1  TACAGCTTGGACAACTTATCAATGGCGACATCACTAAACAAAGATTGGCC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTTGGACAACTTATCAATGGCGACATCACTAAACAAAGATTGGCC  942

seq1  TTCCTCCTCCAGTAAACATTAAGTGTCAAAACACAAGAAGAGATTGGACC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTCCAGTAAACATTAAGTGTCAAAACACAAGAAGAGATTGGACC  992

seq1  TCACAAGGACCTCCATGTTTGACAGGCACAATCATGTACAGGTCGACTGC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGGACCTCCATGTTTGACAGGCACAATCATGTACAGGTCGACTGC  1042

seq1  AAGTTCCCACAGATATTTTGAGTTCATGAATACAATGGTTATGTCATGTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCCACAGATATTTTGAGTTCATGAATACAATGGTTATGTCATGTC  1092

seq1  CAGAAGACACTGTTTCAAGTTCCGTTGGAAAGAAGACAGCTTGAGACCAG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACACTGTTTCAAGTTCCGTTGGAAAGAAGACAGCTTGAGACCAG  1142

seq1  GAATTC  1148
      ||||||
seq2  GAATTC  1148


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