BAC Information

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BAC

Clone NameB6Ng01-227K18
Chromosome11 (Build37)
Map Location 105,852,875 - 105,980,579
singlet/doubletdoublet
Overlap geneEG217246, Kcnh6, Wdr68, Ccdc44, Map3k3
Upstream geneLOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace
Downstream geneLimd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227K18.bB6Ng01-227K18.g
ACCGA041283GA041284
length1,1891,160
definitionB6Ng01-227K18.b B6Ng01-227K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,979,405 - 105,980,579)(105,852,875 - 105,854,014)
sequence
gaattcctaacttgagttcctttgatgatgaacagtgaaatggaagtgta
agccaatcctttcctccccaccttgtgttttggacacagggttttactgc
agaattagaaatcctaagacagagtttcaaacactctctgtgtattattt
agagaaaggatgggagagttgtctcaaaacaatgatccagctcctgttct
tagagagtttatagtatcttgtgatgtaatttacaaatatgcaacaagaa
gacaattactaaccaaaatatgaactagtatgaaaaccacattcaaactg
aagaaataacataataaaataaccaacaaagctgggcatggtggcacacg
cctttaatcccagcactcgggaggcagaggcaggtggatttctgagttca
aggccagcctggtctacagagtgagttccaggacagccagggctacacag
agaaaccctgtctcaaaaaaccaaaaataaaaataaaataacctacaatg
ctgatacactgtaacagataaaatcaaactggctgctaaacaaacaaacc
aacaacccagaagaatgtatggacttactgcagataaggagggagtatgc
taaaggatgtgaaaaagatgagagtggggagctataagcaggggcagctg
gcaatcgtcatgaactgaatgaaaacagcgtccacaggctcatatcttag
tcaccaagaagtgggactggttaagaattagaaagactaggaggcgtggc
ctttttagagaaaatgtgtcactaggtatggatgttgaggtttaaaaagc
ccatgctaggcccagttttggtctatccatctgtctgtatgtccctccct
ctatttcaaaaaacacaaaatagagtaaaataaactgggcagcataaagg
gctagtccacctaaactactgtggtatctattgtccacagatctcaactc
ataaccatactaactgtcctcggtttactgtcttcaagtttgaagaaaag
gaagagtgccaagaaaaccttcgggaacatgccattctacagtattggca
gaacagtcaagatttgcaagcttactaatgcccaccacacaagatgccat
tacgaatgtttaatcctgaggggatcactcaggtacaggaatttatgttt
aagagaaaatatcgaacatctagtaagatgagcacttta
gaattccaggtgtgagagaccacacctggccacctgacagcgcacattct
tcatggctagtccacgagttttatttggttttaaattgcatttgattact
gggggtggctcaccacagcacacatgggagaggtctgaggacaacgtctt
tcctcagtgccatctgctctgatcactgtctctgtcaccgggcaccggct
cttgaaccagagcatttggttcagtccagcttccgttattttccctgtgt
ctataagcaagcccctctgcttgtctccatctgaagctggatggtgatgg
tgcacgcctttaatcccagcacttttgggaggcagaggcagatgtagtca
gtgagaggcagaggcaggtggatttttgagttcgaggccagcctggtctt
cgaattgagttccaggacagccagggctacacagagaaaccctgtctcga
aaaaaaaaaaaaacaacaaaacaaaacaaaaacaaaactaaacgtgaaag
tccccttaaaggcagagcctgggacgtcctctgcgggggcaggttactgt
agccacacctggctttagatttccttctacttgagaagattcacttttat
gagctgtgccgtgtgttatggatgtagctcagtcaggcgagtggatgtga
tccccagcacaacagaaaccagaagtaaaggcatgtgcctgcagaactag
ggagataggaagaggaattgggagttcaagatcaccctcagcttcagagg
gtccaagccagcttggactccaggagacacagcctagaaaggaaggggtt
gaggcatggaaggaagaaggtaggaaaaagaaattaatctttttagttca
ggctttacgaaaggtatccttatcctgtactgtaagaggtgatggctgct
ggacccaggtacccagcgctttgtggcagaggcactggcctcccctggtg
gcccacaggacctctaggcctctactcagccactcagggcttccttgttt
tgggtttatggtttgattgtttttttccccactcacctatcctggggagt
tccttttctgtcttctagaaacagttcctgcgtttttatgccttttgcct
gggcatgtgacccggcacgcccttttggatttccggaatttccacaagaa
tttaaggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_105979405_105980579
seq2: B6Ng01-227K18.b_46_1234 (reverse)

seq1  TAAAGTGCTCAT-TTACTAGATGTCTGGGAATTTTCTCTT--ACATAATT  47
      |||||||||||| ||||||||||| | |  ||||||||||  |||||| |
seq2  TAAAGTGCTCATCTTACTAGATGT-TCGATATTTTCTCTTAAACATAAAT  49

seq1  TCCTGTA-CTGAGTGGT-CCCTCTGGA-TGTACATTCTGTAATTGCATTC  94
      ||||||| ||||||| | ||||| ||| |  |||||| ||||| ||||  
seq2  TCCTGTACCTGAGTGATCCCCTCAGGATTAAACATTC-GTAATGGCATCT  98

seq1  TGT---GTGTGCATT-GTATGCTTGC-AATCTTGACCTGTCTGCCATTAC  139
      |||   ||| ||||| ||| |||||| |||||||||   ||||||| |||
seq2  TGTGTGGTGGGCATTAGTAAGCTTGCAAATCTTGACTGTTCTGCCAATAC  148

seq1  TGTAGA--TGCATGTTCCCGAA-GTTTTCTTGGCACTCCTCCCTTTTCTC  186
      ||||||   ||||||||||||| ||||||||||||||| ||| |||  ||
seq2  TGTAGAATGGCATGTTCCCGAAGGTTTTCTTGGCACTCTTCCTTTTCTTC  198

seq1  AAACTTGAAGACAGTAAACCGAGGACAGTTAGTATGGTTATGAGTTGAGA  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGAAGACAGTAAACCGAGGACAGTTAGTATGGTTATGAGTTGAGA  248

seq1  TCTGTGGAC-ATAGAATACCACAGTAGTTTAGGTGGACTAGCCC-TTATG  284
      ||||||||| |||| ||||||||||||||||||||||||||||| |||||
seq2  TCTGTGGACAATAG-ATACCACAGTAGTTTAGGTGGACTAGCCCTTTATG  297

seq1  CTG-CCAGTTTATTTTACTCTATTTTGTGTTTTTTGAAATAGAGGGAGGG  333
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAGTTTATTTTACTCTATTTTGTGTTTTTTGAAATAGAGGGAGGG  347

seq1  ACATACAGACAGATGGATAGACCAAAACTGGGCCTAGCATGGGCTTTTTA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAGACAGATGGATAGACCAAAACTGGGCCTAGCATGGGCTTTTTA  397

seq1  AACCTCAACATCCATACCTAGTGACACATTTTCTCTAAAAAGGCCACGCC  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAACATCCATACCTAGTGACACATTTTCTCTAAAAAGGCCACGCC  447

seq1  TCCTAGTCTTTCTAATTCTTAACCAGTCCCACTTCTTGGTGACTAAGATA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTCTTTCTAATTCTTAACCAGTCCCACTTCTTGGTGACTAAGATA  497

seq1  TGAGCCTGTGGACGCTGTTTTCATTCAGTTCATGACGATTGCCAGCTGCC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGTGGACGCTGTTTTCATTCAGTTCATGACGATTGCCAGCTGCC  547

seq1  CCTGCTTATAGCTCCCCACTCTCATCTTTTTCACATCCTTTAGCATACTC  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTATAGCTCCCCACTCTCATCTTTTTCACATCCTTTAGCATACTC  597

seq1  CCTCCTTATCTGCAGTAAGTCCATACATTCTTCTGGGTTGTTGGTTTGTT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTATCTGCAGTAAGTCCATACATTCTTCTGGGTTGTTGGTTTGTT  647

seq1  TGTTTAGCAGCCAGTTTGATTTTATCTGTTACAGTGTATCAGCATTGTAG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGCAGCCAGTTTGATTTTATCTGTTACAGTGTATCAGCATTGTAG  697

seq1  GTTATTTTATTTTTATTTTTGGTTTTTTGAGACAGGGTTTCTCTGTGTAG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTATTTTTATTTTTGGTTTTTTGAGACAGGGTTTCTCTGTGTAG  747

seq1  CCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCA  797

seq1  GAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCC  847

seq1  ACCATGCCCAGCTTTGTTGGTTATTTTATTATGTTATTTCTTCAGTTTGA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCCCAGCTTTGTTGGTTATTTTATTATGTTATTTCTTCAGTTTGA  897

seq1  ATGTGGTTTTCATACTAGTTCATATTTTGGTTAGTAATTGTCTTCTTGTT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTTTCATACTAGTTCATATTTTGGTTAGTAATTGTCTTCTTGTT  947

seq1  GCATATTTGTAAATTACATCACAAGATACTATAAACTCTCTAAGAACAGG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTGTAAATTACATCACAAGATACTATAAACTCTCTAAGAACAGG  997

seq1  AGCTGGATCATTGTTTTGAGACAACTCTCCCATCCTTTCTCTAAATAATA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGATCATTGTTTTGAGACAACTCTCCCATCCTTTCTCTAAATAATA  1047

seq1  CACAGAGAGTGTTTGAAACTCTGTCTTAGGATTTCTAATTCTGCAGTAAA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAGTGTTTGAAACTCTGTCTTAGGATTTCTAATTCTGCAGTAAA  1097

seq1  ACCCTGTGTCCAAAACACAAGGTGGGGAGGAAAGGATTGGCTTACACTTC  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTGTCCAAAACACAAGGTGGGGAGGAAAGGATTGGCTTACACTTC  1147

seq1  CATTTCACTGTTCATCATCAAAGGAACTCAAGTTAGGAATTC  1175
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCACTGTTCATCATCAAAGGAACTCAAGTTAGGAATTC  1189

seq1: chr11_105852875_105854014
seq2: B6Ng01-227K18.g_70_1229

seq1  GAATTCCAGGTGTGAGAGACCACACCTGGCCACCTGACAGCGCACATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGTGAGAGACCACACCTGGCCACCTGACAGCGCACATTCT  50

seq1  TCATGGCTAGTCCACGAGTTTTATTTGGTTTTAAATTGCATTTGATTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTAGTCCACGAGTTTTATTTGGTTTTAAATTGCATTTGATTACT  100

seq1  GGGGGTGGCTCACCACAGCACACATGGGAGAGGTCTGAGGACAACGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGGCTCACCACAGCACACATGGGAGAGGTCTGAGGACAACGTCTT  150

seq1  TCCTCAGTGCCATCTGCTCTGATCACTGTCTCTGTCACCGGGCACCGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGTGCCATCTGCTCTGATCACTGTCTCTGTCACCGGGCACCGGCT  200

seq1  CTTGAACCAGAGCATTTGGTTCAGTCCAGCTTCCGTTATTTTCCCTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACCAGAGCATTTGGTTCAGTCCAGCTTCCGTTATTTTCCCTGTGT  250

seq1  CTATAAGCAAGCCCCTCTGCTTGTCTCCATCTGAAGCTGGATGGTGATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGCAAGCCCCTCTGCTTGTCTCCATCTGAAGCTGGATGGTGATGG  300

seq1  TGCACGCCTTTAATCCCAGCACTTTTGGGAGGCAGAGGCAGATGTAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGCCTTTAATCCCAGCACTTTTGGGAGGCAGAGGCAGATGTAGTCA  350

seq1  GTGAGAGGCAGAGGCAGGTGGATTTTTGAGTTCGAGGCCAGCCTGGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGGCAGAGGCAGGTGGATTTTTGAGTTCGAGGCCAGCCTGGTCTT  400

seq1  CGAATTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGA  450

seq1  AAAAAAAAAAAAACAACAAAACAAAACAAAAACAAAACTAAACGTGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAACAACAAAACAAAACAAAAACAAAACTAAACGTGAAAG  500

seq1  TCCCCTTAAAGGCAGAGCCTGGGACGTCCTCTGCGGGGGCAGGTTACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTAAAGGCAGAGCCTGGGACGTCCTCTGCGGGGGCAGGTTACTGT  550

seq1  AGCCACACCTGGCTTTAGATTTCCTTCTACTTGAGAAGATTCACTTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACACCTGGCTTTAGATTTCCTTCTACTTGAGAAGATTCACTTTTAT  600

seq1  GAGCTGTGCCGTGTGTTATGGATGTAGCTCAGTCAGGCGAGTGGATGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGCCGTGTGTTATGGATGTAGCTCAGTCAGGCGAGTGGATGTGA  650

seq1  TCCCCAGCACAACAGAAACCAGAAGTAAAGGCATGTGCCTGCAGAACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCACAACAGAAACCAGAAGTAAAGGCATGTGCCTGCAGAACTAG  700

seq1  GGAGATAGGAAGAGGAATTGGGAGTTCAAGATCACCCTCAGCTTCAGA-G  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGAGATAGGAAGAGGAATTGGGAGTTCAAGATCACCCTCAGCTTCAGAGG  750

seq1  GTCCAAGCCAGCTTGGACTCCAGGAGACACAGCCTAGAAAGGAAGGGGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGCCAGCTTGGACTCCAGGAGACACAGCCTAGAAAGGAAGGGGTT  800

seq1  GAGGCAGGGAAGGAAGAAGGTAGGAAAAAGAAATTAAGCCTTTTAGTTCA  849
      |||||| |||||||||||||||||||||||||||||| | ||||||||||
seq2  GAGGCATGGAAGGAAGAAGGTAGGAAAAAGAAATTAATCTTTTTAGTTCA  850

seq1  GGCTTTACGAAAGGTAT-CATAT-CTGTACTGTAAGAGGTGATGGGCTGC  897
      ||||||||||||||||| | ||| ||||||||||||||||||| ||||||
seq2  GGCTTTACGAAAGGTATCCTTATCCTGTACTGTAAGAGGTGAT-GGCTGC  899

seq1  TGGACCCAGGTA-CCAGCGCTTTGTGGCAGAGGCACTGGCCTCCCCT-GT  945
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  TGGACCCAGGTACCCAGCGCTTTGTGGCAGAGGCACTGGCCTCCCCTGGT  949

seq1  GG-CCACAGGA-CTCTAGG-CTCTACTCAGCCACTCAGTGCTTCTTTGTT  992
      || |||||||| ||||||| |||||||||||||||||| ||||| |||||
seq2  GGCCCACAGGACCTCTAGGCCTCTACTCAGCCACTCAGGGCTTCCTTGTT  999

seq1  TT-GGTTTTTGGTTTGTTTGTTTTTTTTCCCA-TCTACTAT-CTTGGGAG  1039
      || ||||| ||||||| |||||||||| |||| ||  |||| || |||||
seq2  TTGGGTTTATGGTTTGATTGTTTTTTTCCCCACTCACCTATCCTGGGGAG  1049

seq1  TCCCTTTTCTTGTCTTCTAG-ATCAGCT-CTGCGTTTTT-TG-CTTTTG-  1084
      | ||||||| |||||||||| | ||| | |||||||||| || |||||| 
seq2  TTCCTTTTC-TGTCTTCTAGAAACAGTTCCTGCGTTTTTATGCCTTTTGC  1098

seq1  CTGGGCATGGTGACACGGGCACGCC--TTTG--ATTCTAGAATT--CACA  1128
      |||||||| ||||| | ||||||||  ||||   |||  |||||  ||||
seq2  CTGGGCAT-GTGAC-CCGGCACGCCCTTTTGGATTTCCGGAATTTCCACA  1146

seq1  AGA--TTAAGGCAG  1140
      |||  |||||||||
seq2  AGAATTTAAGGCAG  1160