BAC Information

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BAC

Clone NameB6Ng01-228A08
Chromosome11 (Build37)
Map Location 105,032,456 - 105,132,848
singlet/doubletdoublet
Overlap geneLOC666771, Tlk2, 1700052K11Rik
Upstream geneCrhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2
Downstream geneMrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228A08.bB6Ng01-228A08.g
ACCGA041538GA041539
length966743
definitionB6Ng01-228A08.b B6Ng01-228A08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,032,456 - 105,033,409)(105,132,106 - 105,132,848)
sequence
gaattcctgtctcaaaaaaccaaggggtggggcagcaaaggctagtccgg
atggttcagtattttagcagtggggacttgttaaaacagagtttatgcct
ctcttgcattttagctattagaaagagggaacatggcaatgatttttaaa
atatggagaagaggttaaaagaggacatgagggaagggaggctgctcttc
agggaacaggaagattgttcagcatcagtgagctgtggggaagagcttat
gacttgataagtgaaacaattgtgtcaagacttgcttagggtgtggggga
ttgacttcaacagcagtctgcttgctgcctagcaaatgcaaggccctgcc
tgggtttgcctcctaggatgggggtagggagtatatgttcaattggctta
agcagagcttccaactaggcagggaggggagataggaaacaagagatggc
cggcagtggtgaatctcagggaggctgagtgctagggtgttcatctatgc
tgtactttcctgcaagtagtgctccattttgttagatatgggaaaaagag
ggactggagagatggctcattggttaagagcactgagtgatcttccagag
gtttctgagttcaattcccagcaaccacatggtggctcacagccatctat
aataggatccaatgtcctttttctggtgtgtctgaagatagcaacagtgt
actttacttacatacaaataaataatcataaaaaaaaagaaaaaaagaaa
gaaatgaaatgggaagaagagaggaaaataagactgacagcttgctcagt
cctgtcagccaggtacttgatagttcctgggatattgtgtcaactttaat
actgctcatggaatcgaggtcatagtttttcagatgaggaaaccagaggt
ggtgagatgggaaacagtcttctgtcaaacaactgcctattctcactggc
cactgacaatcctgtc
gaattcagggctatttttttaaggcaactaaacaaccctgttctctgctg
gcttgtacagtcagcactgtgtaataaacacagatctccaggggacagac
tatacaagcactctctcaagggttttcaagaacagaaagaaaatagaaga
aaaattgatatagaaaatcaaagtactaaaaactctacttctgtcttagc
agactacatcaggattaattgttaatcactaaggagtcagtataacagag
ccacctccccaccagccgatttggcagacttcctccctgatacctaccaa
taagtaccagctccttgtgacgtcagctccatgccatccactgaattgta
gctatcatcatccatgatcttggaaagaccaaaatctgtaatttttatct
ctccacatgctgtaccatttactaaaaggatattacctaaaaagataaag
acctttatgaataaaatgagacttctttattaagagaaaagacacacaag
aagggaacaagtgaattctaaatctttggaataaaacagtctaattctaa
ctttgggagaatcctcagtgtccactggaaatttctattttcttagaatt
gcctgtttaatgtgccaaaatccacgctgggcactggaaacaaaaatgac
ctgccaaagtaaaatattacttgtacagttgattttttaagaagaagaag
aagaagaagaagaggaggaggaggaagaggaggaggaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_105032456_105033409
seq2: B6Ng01-228A08.b_42_1007

seq1  GAATTCCTGTCTCAAAAAACCAAGGGGTGGGGCAGCAAAGGCTAGTCCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCTCAAAAAACCAAGGGGTGGGGCAGCAAAGGCTAGTCCGG  50

seq1  ATGGTTCAGTATTTTAGCAGTGGGGACTTGTTAAAACAGAGTTTATGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCAGTATTTTAGCAGTGGGGACTTGTTAAAACAGAGTTTATGCCT  100

seq1  CTCTTGCATTTTAGCTATTAGAAAGAGGGAACATGGCAATGATTTTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCATTTTAGCTATTAGAAAGAGGGAACATGGCAATGATTTTTAAA  150

seq1  ATATGGAGAAGAGGTTAAAAGAGGACATGAGGGAAGGGAGGCTGCTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGAAGAGGTTAAAAGAGGACATGAGGGAAGGGAGGCTGCTCTTC  200

seq1  AGGGAACAGGAAGATTGTTCAGCATCAGTGAGCTGTGGGGAAGAGCTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACAGGAAGATTGTTCAGCATCAGTGAGCTGTGGGGAAGAGCTTAT  250

seq1  GACTTGATAAGTGAAACAATTGTGTCAAGACTTGCTTAGGGTGTGGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGATAAGTGAAACAATTGTGTCAAGACTTGCTTAGGGTGTGGGGGA  300

seq1  TTGACTTCAACAGCAGTCTGCTTGCTGCCTAGCAAATGCAAGGCCCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTCAACAGCAGTCTGCTTGCTGCCTAGCAAATGCAAGGCCCTGCC  350

seq1  TGGGTTTGCCTCCTAGGATGGGGGTAGGGAGTATATGTTCAATTGGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGCCTCCTAGGATGGGGGTAGGGAGTATATGTTCAATTGGCTTA  400

seq1  AGCAGAGCTTCCAACTAGGCAGGGAGGGGAGATAGGAAACAAGAGATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGCTTCCAACTAGGCAGGGAGGGGAGATAGGAAACAAGAGATGGC  450

seq1  CGGCAGTGGTGAATCTCAGGGAGGCTGAGTGCTAGGGTGTTCATCTATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGTGGTGAATCTCAGGGAGGCTGAGTGCTAGGGTGTTCATCTATGC  500

seq1  TGTACTTTCCTGCAAGTAGTGCTCCATTTTGTTAGATATGGGAAAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTCCTGCAAGTAGTGCTCCATTTTGTTAGATATGGGAAAAAGAG  550

seq1  GGACTGGAGAGATGGCTCAGTGGTTAAGAGCACTGAGTGATCTTCCAGAG  600
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGACTGGAGAGATGGCTCATTGGTTAAGAGCACTGAGTGATCTTCCAGAG  600

seq1  G-TTCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAGCCATCTAT  649
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAGCCATCTAT  650

seq1  AATAGGATCCAATGTCC-TTTTCTGGTGTGTCTGAAGATAGCAACAGTGT  698
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATAGGATCCAATGTCCTTTTTCTGGTGTGTCTGAAGATAGCAACAGTGT  700

seq1  AC-TTACATACATAC-AATAAATAAATCATAAAAAAAA--GAAAAAAGAA  744
      || |||| ||||||| ||||||| ||||||||||||||   |||||||||
seq2  ACTTTACTTACATACAAATAAAT-AATCATAAAAAAAAAGAAAAAAAGAA  749

seq1  AGAAATGAAATGGGAAGAAGAGAGG-AAATAAGACTGACAGCTTGCTCAG  793
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAAATGAAATGGGAAGAAGAGAGGAAAATAAGACTGACAGCTTGCTCAG  799

seq1  T-CTGTCAGCCAGTTACTTGATAGTTCCT-GGATATTGTGTCAACTTTAA  841
      | ||||||||||| ||||||||||||||| ||||||||||||||||||||
seq2  TCCTGTCAGCCAGGTACTTGATAGTTCCTGGGATATTGTGTCAACTTTAA  849

seq1  TACTGCTCATGGAATCGAGGTCATAG-TTTTCAGATGAGGAAA-CAGAGG  889
      |||||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  TACTGCTCATGGAATCGAGGTCATAGTTTTTCAGATGAGGAAACCAGAGG  899

seq1  TGGTGAGATGG--AACAGTCTTCTGTCAGACCACTGCCTTTTCTCACTGG  937
      |||||||||||  ||||||||||||||| || ||||||| ||||||||||
seq2  TGGTGAGATGGGAAACAGTCTTCTGTCAAACAACTGCCTATTCTCACTGG  949

seq1  CCACTGACAATCCTGTC  954
      |||||||||||||||||
seq2  CCACTGACAATCCTGTC  966

seq1: chr11_105132106_105132848
seq2: B6Ng01-228A08.g_68_810 (reverse)

seq1  TCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTC  50

seq1  TTCTTAAAAAATCAACTGTACAAGTAATATTTTACTTTGGCAGGTCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAAAATCAACTGTACAAGTAATATTTTACTTTGGCAGGTCATTT  100

seq1  TTGTTTCCAGTGCCCAGCGTGGATTTTGGCACATTAAACAGGCAATTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCAGTGCCCAGCGTGGATTTTGGCACATTAAACAGGCAATTCTA  150

seq1  AGAAAATAGAAATTTCCAGTGGACACTGAGGATTCTCCCAAAGTTAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAGAAATTTCCAGTGGACACTGAGGATTCTCCCAAAGTTAGAAT  200

seq1  TAGACTGTTTTATTCCAAAGATTTAGAATTCACTTGTTCCCTTCTTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGTTTTATTCCAAAGATTTAGAATTCACTTGTTCCCTTCTTGTGT  250

seq1  GTCTTTTCTCTTAATAAAGAAGTCTCATTTTATTCATAAAGGTCTTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCTCTTAATAAAGAAGTCTCATTTTATTCATAAAGGTCTTTATC  300

seq1  TTTTTAGGTAATATCCTTTTAGTAAATGGTACAGCATGTGGAGAGATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGGTAATATCCTTTTAGTAAATGGTACAGCATGTGGAGAGATAAA  350

seq1  AATTACAGATTTTGGTCTTTCCAAGATCATGGATGATGATAGCTACAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAGATTTTGGTCTTTCCAAGATCATGGATGATGATAGCTACAATT  400

seq1  CAGTGGATGGCATGGAGCTGACGTCACAAGGAGCTGGTACTTATTGGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGATGGCATGGAGCTGACGTCACAAGGAGCTGGTACTTATTGGTAG  450

seq1  GTATCAGGGAGGAAGTCTGCCAAATCGGCTGGTGGGGAGGTGGCTCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGGGAGGAAGTCTGCCAAATCGGCTGGTGGGGAGGTGGCTCTGTT  500

seq1  ATACTGACTCCTTAGTGATTAACAATTAATCCTGATGTAGTCTGCTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGACTCCTTAGTGATTAACAATTAATCCTGATGTAGTCTGCTAAGA  550

seq1  CAGAAGTAGAGTTTTTAGTACTTTGATTTTCTATATCAATTTTTCTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTAGAGTTTTTAGTACTTTGATTTTCTATATCAATTTTTCTTCTA  600

seq1  TTTTCTTTCTGTTCTTGAAAACCCTTGAGAGAGTGCTTGTATAGTCTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCTGTTCTTGAAAACCCTTGAGAGAGTGCTTGTATAGTCTGTC  650

seq1  CCCTGGAGATCTGTGTTTATTACACAGTGCTGACTGTACAAGCCAGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGATCTGTGTTTATTACACAGTGCTGACTGTACAAGCCAGCAGA  700

seq1  GAACAGGGTTGTTTAGTTGCCTTAAAAAAATAGCCCTGAATTC  743
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGGTTGTTTAGTTGCCTTAAAAAAATAGCCCTGAATTC  743