BAC Information

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BAC

Clone NameB6Ng01-228C06
Chromosome11 (Build37)
Map Location 68,573,925 - 68,694,577
singlet/doubletdoublet
Overlap geneMyh10, Ndel1
Upstream geneGlp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42
Downstream gene9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228C06.bB6Ng01-228C06.g
ACCGA041628GA041629
length200141
definitionB6Ng01-228C06.b B6Ng01-228C06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,573,925 - 68,574,124)(68,694,437 - 68,694,577)
sequence
cagagttaaagtattttcatcttatgttaataaagttagagcaaagacag
gacatgtcagatacataaaataatcctaggaaatgtcgttgaatagagtg
acccgagggaagtgtgtggtgtgtggtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgcgtgagagtggtgtggagacgttatagaagggctccctctta

cgaatctgctgaaagtcaggtaaggctccacctctgggccaccctcaacg
acggtgtttattttgtttattgttttaggatttgttttttgtacatattt
ctgtgtgacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_68573925_68574124
seq2: B6Ng01-228C06.b_50_249

seq1  CAGAGTTAAAGTATTTTCATCTTATGTTAATAAAGTTAGAGCAAAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTAAAGTATTTTCATCTTATGTTAATAAAGTTAGAGCAAAGACAG  50

seq1  GACATGTCAGATACATAAAATAATCCTAGGAAATGTCGTTGAATAGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTCAGATACATAAAATAATCCTAGGAAATGTCGTTGAATAGAGTG  100

seq1  ACCCGAGGGAAGTGTGTGGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGAGGGAAGTGTGTGGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTG  150

seq1  TGTGTATCCAAGAAAGTTGTGTGTAGACGTTATAGAAGGGCTCCCTCTTA  200
      ||||| | |  || ||| ||||| ||||||||||||||||||||||||||
seq2  TGTGTGTGCGTGAGAGTGGTGTGGAGACGTTATAGAAGGGCTCCCTCTTA  200

seq1: chr11_68694437_68694577
seq2: B6Ng01-228C06.g_71_211 (reverse)

seq1  ACACACACACACACACACACACACACACACACGTCACACAGAAATATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACGTCACACAGAAATATGTA  50

seq1  CAAAAAACAAATCCTAAAACAATAAACAAAATAAACACCGTCGTTGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACAAATCCTAAAACAATAAACAAAATAAACACCGTCGTTGAGGG  100

seq1  TGGCCCAGAGGTGGAGCCTTACCTGACTTTCAGCAGATTCG  141
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAGAGGTGGAGCCTTACCTGACTTTCAGCAGATTCG  141