BAC Information

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BAC

Clone NameB6Ng01-228C14
Chromosome11 (Build37)
Map Location 50,311,399 - 50,460,461
singlet/doubletdoublet
Overlap geneAdamts2
Upstream geneOlfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1
Downstream geneZfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228C14.bB6Ng01-228C14.g
ACCGA041641GA041642
length1,1681,085
definitionB6Ng01-228C14.b B6Ng01-228C14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,459,316 - 50,460,461)(50,311,399 - 50,312,474)
sequence
gaattcattctccttgtttttcttctctgctttcctggggtgagttttct
tataagtatattttcttatacttaaaagcaatttttataagtattttgta
tgctgagcaaaagcatgtttaattgtggtctgagagattttaaagggcac
agcatcctttccaggtacctgttggattgcttttgtcaccatctttttct
atggtcttttttccttgccctcttgtccatgacctgcctgaggacaggac
agacctccttcatgcctgtgtccctaacactgagcacagcgcttttggca
taataagcttttgaaaatacttctcacttaggacaaacccctttacaaag
gggccttggttctggaagaatgatgtgcacgctcaaatatgcactttaaa
gctgagatccaaatcaacacaatgatattatttaagcatcctcatacata
aaacctaattcggaaacagtctgggaaatgcaagccagcagacagataaa
gtgttattgctctggccctggagagaacccttcatctgcacagagccaga
agaaggatgtgagaagtggaaccggccccacaagccagaggcaggagcgc
gttctgcatgggctgagtgccagctctgaataggggcctccccaggctac
agacagcagctgcctctgaccagacctccctgttgggcttagactcaagc
ccatcaccctggccaaggaggataaacttgtccctgctacaagaacatca
cactgagatgtgggtagaagctctgggggccttgcatgctccttcctttc
agaaaggaaaagaaagcaaagggcattgctcagagacccagtggctttat
cttctagattgctttgttattttgtttattacattttatttcattctcat
gagtctgtcctgaggctggggccctcatctgctgagccattttaccagcc
caagttatttttcactttcttcactaccctgcaaaacatctgaccagagc
aacttaaaggatgaaaagggtctggcttagctcacagttcttgggagctt
acagttccaccacattgggtaatgcattgcgacagggcaacattgaatgc
agctggttcacagtgttattccgccagcccaggaaactgaaaagaaaggt
cagtcttgatactcagct
gaattctgaactaagcttacaaattaggagataattagtagacaattagc
atatttctgactctaatcttaaaaatgtttcattttgatggccttattca
aatagaaaattctgggacccttgtgacttttttttactgggcagtggtgg
agagaggaaacctttggccagtagcctgttaccacccagcttctgccgtg
cagggctcccacaccaatgtgattaactgcttccttcacagtctccaagt
caactaagggtgtggtggaccccacaggatagaagaaacctgctctgggt
actggaaacgagcttgaggctgattaggtctggatacccagatcatggtt
caacagggaatagggagctggctctgggtgggcaccacttgatgaccttg
ctgatgtcttattccatgaagaagggcattccacaagatgctcacgatgg
aggcacagggagactgcttctccggtagggcatggtgtggtttagattgc
aacttcttcccaagcactgcttattaaatgtttggtccacagggtggcac
aatgggaggtggtggaaccttttgggagtgcgtgccttcaaggcactgtg
ggaccccccctgacctttctttctattttctggctgtgatgtgttacttt
agtatagtctctaaagctttgaagccacttgatcctggacttgggtcttc
aaaactgtgagctatgatgacgttgttctctttgcacgttatctcagaca
ttttgtcataataatacaaaactgacagacaaggggtgaaggtcctgttc
tgtaactaccatcatagtattgacagaggtcagaaagactcccgtttgta
attgtgctttattaatccaccagccaaggcccttttgtgactgtgctgtc
accctcttctggtctctaatggtctcaagggtaggacaattgaatagaag
ttgtcccctaaagtcttatctggagtctcatgcattcagagagccttgaa
acttaatgaattgtttgtagagacccttaaatctttatactgttgtgaat
ttactgactgaaaggttggggaattttcttttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_50459316_50460461
seq2: B6Ng01-228C14.b_43_1210 (reverse)

seq1  AGCTGAGTATCAGAACTGACCTCTC---TCAGTTTCCT-GGCT-GCGGA-  44
      ||||||||||||  |||||||| ||   |||||||||| |||| ||||| 
seq2  AGCTGAGTATCAAGACTGACCTTTCTTTTCAGTTTCCTGGGCTGGCGGAA  50

seq1  -TACACTGTG-ACCAGCTGC-TTC-ATGT--GCCTGTCGCCATGCCTTAC  88
        |||||||| ||||||||| ||| ||||   |||||||| |||| ||||
seq2  TAACACTGTGAACCAGCTGCATTCAATGTTGCCCTGTCGCAATGCATTAC  100

seq1  CCATTGTGGTGG-ACTGTAAGCTCCCA--GACTGTGAGCTAAGCCAGACC  135
      ||| |||||||| ||||||||||||||   ||||||||||||||||||||
seq2  CCAATGTGGTGGAACTGTAAGCTCCCAAGAACTGTGAGCTAAGCCAGACC  150

seq1  C-TTTCATCC-TTAAGTTGCTCTGGTCAGATGTTTTGCAGGGTAGTGA--  181
      | |||||||| |||||||||||||||||||||||||||||||||||||  
seq2  CTTTTCATCCTTTAAGTTGCTCTGGTCAGATGTTTTGCAGGGTAGTGAAG  200

seq1  GAAGTG-AAAATAACTTGGGCTGGTAAAATGGCTCAGCAGATGAGGGCCC  230
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAAAAATAACTTGGGCTGGTAAAATGGCTCAGCAGATGAGGGCCC  250

seq1  CAGCCTCAGGACAGACTCATGAGAATGAA--TAAATGTAATAAACAAAAT  278
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  CAGCCTCAGGACAGACTCATGAGAATGAAATAAAATGTAATAAACAAAAT  300

seq1  AACAAAGCAATCTAGAAGATAAAGCCACTGGGTCTCTGAGCAATGCCCTT  328
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCAATCTAGAAGATAAAGCCACTGGGTCTCTGAGCAATGCCCTT  350

seq1  TGCTTTCTTTTCCTTTCTGAAAGGAAGGAGCATGCAAGGCCCCCAGAGCT  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTTTTCCTTTCTGAAAGGAAGGAGCATGCAAGGCCCCCAGAGCT  400

seq1  TCTACCCACATCTCAGTGTGATGTTCTTGTAGCAGGGACAAGTTTATCCT  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCACATCTCAGTGTGATGTTCTTGTAGCAGGGACAAGTTTATCCT  450

seq1  CCTTGGCCAGGGTGATGGGCTTGAGTCTAAGCCCAACAGGGAGGTCTGGT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCCAGGGTGATGGGCTTGAGTCTAAGCCCAACAGGGAGGTCTGGT  500

seq1  CAGAGGCAGCTGCTGTCTGTAGCCTGGGGAGGCCCCTATTCAGAGCTGGC  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGCTGCTGTCTGTAGCCTGGGGAGGCCCCTATTCAGAGCTGGC  550

seq1  ACTCAGCCCATGCAGAACGCGCTCCTGCCTCTGGCTTGTGGGGCCGGTTC  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCCCATGCAGAACGCGCTCCTGCCTCTGGCTTGTGGGGCCGGTTC  600

seq1  CACTTCTCACATCCTTCTTCTGGCTCTGTGCAGATGAAGGGTTCTCTCCA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTCACATCCTTCTTCTGGCTCTGTGCAGATGAAGGGTTCTCTCCA  650

seq1  GGGCCAGAGCAATAACACTTTATCTGTCTGCTGGCTTGCATTTCCCAGAC  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGAGCAATAACACTTTATCTGTCTGCTGGCTTGCATTTCCCAGAC  700

seq1  TGTTTCCGAATTAGGTTTTATGTATGAGGATGCTTAAATAATATCATTGT  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCGAATTAGGTTTTATGTATGAGGATGCTTAAATAATATCATTGT  750

seq1  GTTGATTTGGATCTCAGCTTTAAAGTGCATATTTGAGCGTGCACATCATT  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTTGGATCTCAGCTTTAAAGTGCATATTTGAGCGTGCACATCATT  800

seq1  CTTCCAGAACCAAGGCCCCTTTGTAAAGGGGTTTGTCCTAAGTGAGAAGT  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAACCAAGGCCCCTTTGTAAAGGGGTTTGTCCTAAGTGAGAAGT  850

seq1  ATTTTCAAAAGCTTATTATGCCAAAAGCGCTGTGCTCAGTGTTAGGGACA  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAAAGCTTATTATGCCAAAAGCGCTGTGCTCAGTGTTAGGGACA  900

seq1  CAGGCATGAAGGAGGTCTGTCCTGTCCTCAGGCAGGTCATGGACAAGAGG  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATGAAGGAGGTCTGTCCTGTCCTCAGGCAGGTCATGGACAAGAGG  950

seq1  GCAAGGAAAAAAGACCATAGAAAAAGATGGTGACAAAAGCAATCCAACAG  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGAAAAAAGACCATAGAAAAAGATGGTGACAAAAGCAATCCAACAG  1000

seq1  GTACCTGGAAAGGATGCTGTGCCCTTTAAAATCTCTCAGACCACAATTAA  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGGAAAGGATGCTGTGCCCTTTAAAATCTCTCAGACCACAATTAA  1050

seq1  ACATGCTTTTGCTCAGCATACAAAATACTTATAAAAATTGCTTTTAAGTA  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTTTTGCTCAGCATACAAAATACTTATAAAAATTGCTTTTAAGTA  1100

seq1  TAAGAAAATATACTTATAAGAAAACTCACCCCAGGAAAGCAGAGAAGAAA  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAATATACTTATAAGAAAACTCACCCCAGGAAAGCAGAGAAGAAA  1150

seq1  AACAAGGAGAATGAATTC  1146
      ||||||||||||||||||
seq2  AACAAGGAGAATGAATTC  1168

seq1: chr11_50311399_50312474
seq2: B6Ng01-228C14.g_70_1154

seq1  GAATTCTGAACTAAGCTTACAAATTAGGAGATAATTAGTAGACAATTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAACTAAGCTTACAAATTAGGAGATAATTAGTAGACAATTAGC  50

seq1  ATATTTCTGACTCTAATCTTAAAAATGTTTCATTTTGATGGCCTTATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTGACTCTAATCTTAAAAATGTTTCATTTTGATGGCCTTATTCA  100

seq1  AATAGAAAATTCTGGGACCCTTGTGACTTTTTTTTACTGGGCAGTGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAATTCTGGGACCCTTGTGACTTTTTTTTACTGGGCAGTGGTGG  150

seq1  AGAGAGGAAACCTTTGGCCAGTAGCCTGTTACCACCCAGCTTCTGCCGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAAACCTTTGGCCAGTAGCCTGTTACCACCCAGCTTCTGCCGTG  200

seq1  CAGGGCTCCCACACCAATGTGATTAACTGCTTCCTTCACAGTCTCCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTCCCACACCAATGTGATTAACTGCTTCCTTCACAGTCTCCAAGT  250

seq1  CAACTAAGGGTGTGGTGGACCCCACAGGATAGAAGAAACCTGCTCTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAAGGGTGTGGTGGACCCCACAGGATAGAAGAAACCTGCTCTGGGT  300

seq1  ACTGGAAACGAGCTTGAGGCTGATTAGGTCTGGATACCCAGATCATGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAACGAGCTTGAGGCTGATTAGGTCTGGATACCCAGATCATGGTT  350

seq1  CAACAGGGAATAGGGAGCTGGCTCTGGGTGGGCACCACTTGATGACCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGGAATAGGGAGCTGGCTCTGGGTGGGCACCACTTGATGACCTTG  400

seq1  CTGATGTCTTATTCCATGAAGAAGGGCATTCCACAAGATGCTCACGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTCTTATTCCATGAAGAAGGGCATTCCACAAGATGCTCACGATGG  450

seq1  AGGCACAGGGAGACTGCTTCTCCGGTAGGGCATGGTGTGGTTTAGATTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGGGAGACTGCTTCTCCGGTAGGGCATGGTGTGGTTTAGATTGC  500

seq1  AACTTCTTCCCAAGCACTGCTTATTAAATGTTTGGTCCACAGGGTGGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTCCCAAGCACTGCTTATTAAATGTTTGGTCCACAGGGTGGCAC  550

seq1  AATGGGAGGTGGTGGAACCTTTTGGGAGTGCGTGCCTTCAAGGCACTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAGGTGGTGGAACCTTTTGGGAGTGCGTGCCTTCAAGGCACTGTG  600

seq1  GGACCCCCCCTGACCTTTC-TTCTATTTTCTGGCTGTGATGTGTTACTTT  649
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGACCCCCCCTGACCTTTCTTTCTATTTTCTGGCTGTGATGTGTTACTTT  650

seq1  AGTATAGTCTCTAAAGCTTTGAAGCCACTTGATCCTGGACTTGGGTCTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGTCTCTAAAGCTTTGAAGCCACTTGATCCTGGACTTGGGTCTTC  700

seq1  AAAACTGTGAGCTATGATGACGTTGTTCTCTTTGCACGTTATCTCAGACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTGAGCTATGATGACGTTGTTCTCTTTGCACGTTATCTCAGACA  750

seq1  TTTTGTCATAATAATACAAAACTGACAGACAAGGGGTGAAGGTCCTGTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCATAATAATACAAAACTGACAGACAAGGGGTGAAGGTCCTGTTC  800

seq1  TGTAACTACCATCATAGTATTGACAGAGGTCAGAAAGACTCCCGTTTGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTACCATCATAGTATTGACAGAGGTCAGAAAGACTCCCGTTTGTA  850

seq1  ATTGTGC-TTATT-ATCCACCAGCC-AGGCCC-TTTGTGACTGTGCTGTC  895
      ||||||| ||||| ||||||||||| |||||| |||||||||||||||||
seq2  ATTGTGCTTTATTAATCCACCAGCCAAGGCCCTTTTGTGACTGTGCTGTC  900

seq1  ACCCCTCTTCTGGTCTCT-ATGGTCTCAAGGGTAGGACAATTG-ATAGAA  943
      | |||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  A-CCCTCTTCTGGTCTCTAATGGTCTCAAGGGTAGGACAATTGAATAGAA  949

seq1  G-TGTCCCC-AAAG-CCTATCTGGAGGTTCTCATGCATTCAGAGAGCC-T  989
      | ||||||| |||| | |||||||||  |||||||||||||||||||| |
seq2  GTTGTCCCCTAAAGTCTTATCTGGAG--TCTCATGCATTCAGAGAGCCTT  997

seq1  GAAAC-TAATGAA-TGGTTGTAGAGACCCTTAAAACCTTTATACTG-TGT  1036
      ||||| ||||||| || |||||||||||||| ||| |||||||||| |||
seq2  GAAACTTAATGAATTGTTTGTAGAGACCCTT-AAATCTTTATACTGTTGT  1046

seq1  GGATTTAACTGACTGGAAAAGGT--GGGGATTTTCTTTTGTT  1076
      | |||| ||||||||  ||||||  ||| |||||||||||||
seq2  GAATTT-ACTGACTG--AAAGGTTGGGGAATTTTCTTTTGTT  1085