BAC Information

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BAC

Clone NameB6Ng01-228E05
Chromosome8 (Build37)11 (Build37)
Map Location 74,352,828 - 74,353,82144,156,000 - 44,156,435
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneArrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996
Downstream geneLOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228E05.bB6Ng01-228E05.g
ACCGA041717GA041718
length995956
definitionB6Ng01-228E05.b B6Ng01-228E05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(74,352,828 - 74,353,821)(44,156,000 - 44,156,435)
sequence
gaattcataaaatgacagaaagtaaataataccggctcctggaagtaggt
acagtcaacatggaagcaaccaacatatttatgtttctctttttagattg
actggctttaagtgtgtgaatgctttgcatgtgtattttgtctgtgtccc
atgtgtgtgtgtgcttcccacagacatcagaagaggttatttcacccccg
gacttggtgttccagaattttgtccgcaaatgtttatgtattataaatga
aacccaggtgctaggcaagagcaatacttgttaaaaactcatcagccccc
ttttctagctcctagagtgaatgtgtttgatatgaaaatgattaaaagta
tcataagggaaaataagtagtcagtcttaggatatttttaacttcctgga
tccaggcctcagccttcacattttacctattgaagtccaaaggactaata
ggcagggtgtgcacaataggaggcttggtatgctgggcacacctttaatt
catgaacccacaaatcaggcaggattgtctttgtcagttcaaagacaccc
tgttcttaattgatatgatgtctctgtctctctagagcctctttcccctt
tattttaaaactagaatataaatgcataaatatatgtatatatatacaca
tattcatatacacatatatatgtataaaaacatacacacatacatggact
catgcatgtatatatacataaaatataccaaccaggtggctcagtggatt
agtgcacttgccttggaaccctaataagctgaatttcatcctgaaaaaag
gaaaaagcctgtaatctctgcacccctatatccagattgggaggctaaga
gagtagaacagccctgaaagacaagctagacagattagatccatagagag
cagcagaaatggtcagagcctctttctaactctgtggaagaagagatcca
gctcctgaaatttctctcagtctacacacacacacacacacacac
gaattctctttagatctgtatccaatttttaattgggttatttggtttgt
tgatgtctactttcttgagttgtctacatattttggatctcagccctctg
ggaaatgtgaaattggtgaaaatcttttctttctgtagggtgccattttg
tgcatttgacagtttcctttttcttacagagtgttttcagcttcatgagg
tactattttttcattgttctttatgactaagttcttggtgttctgttgag
gaagcctgtgacaatgcctttgaggccactccctactttttcttctataa
gattgagtgtatccagttttatgttgtggtctttgatacaattgaacttg
agttttgtatagagtgatagatgtggatctattgtcattttcctacatgc
agatatccagtcagagcagcaatctttgttgaagatgcttttttctccat
tgtgtactattgccttctttgtcgaaaatcaagtgtcaatagatgagcgg
gtttatttctgggtctttaatttgcttccattgttggagttcgtcaaaag
accctcactcacaaagaccacagagaccgccgccattgctgcaaactgca
tgaggatttttattgatccaacatgttggggactcccctcccagcacaca
ggccagaggagagacccagaacaaagaaagaacacactttttataccttt
gtaaggggcagatttgagcaacagggttctcattggtgtagcaagtaacc
ctttcaggcattggttggtttgtatagtgactaagtaaccctttggccta
gtgactcactttgcttgcccccatagtgggttattatgatttggtcagca
aagtaatagtacatttgaacttatgggtcagtcacagctattaatgtcac
aaggaatcctagcaaggtcaggtggtttgtggtctttttcagaattcatt
gtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_74352828_74353821
seq2: B6Ng01-228E05.b_44_1038 (reverse)

seq1  GTGTGTGTGTGTGTGTGTGTGTAGACTGGAGAGAAATTTCAGGAGCTGGA  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTAGACT-GAGAGAAATTTCAGGAGCTGGA  49

seq1  TCTCTTCTTCCACAGAGTTAGAAAGAGGCTCTGACCATTTCTGCTGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTTCCACAGAGTTAGAAAGAGGCTCTGACCATTTCTGCTGCTCT  99

seq1  CTATGG-TCTAATCTGTCTAGCTTGTCTTTCAGGGCTGTTCTACTCTCTT  149
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGATCTAATCTGTCTAGCTTGTCTTTCAGGGCTGTTCTACTCTCTT  149

seq1  AGCCT-CCAATCTGGATTTAGGGGTGCAGAGATTACAGGCTTTTTCCTTT  198
      ||||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCCTCCCAATCTGGATATAGGGGTGCAGAGATTACAGGCTTTTTCCTTT  199

seq1  TTTCAGGATGAAATTCAGCTTATTAGGGTTCCAAGGCAAGTGCACTAATC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGATGAAATTCAGCTTATTAGGGTTCCAAGGCAAGTGCACTAATC  249

seq1  CACTGAGCCACCTGGTTGGTATATTTTATGTATATATACATGCATGAGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCCACCTGGTTGGTATATTTTATGTATATATACATGCATGAGTC  299

seq1  CATGTATGTGTGTATGTTTTTATACATATATATGTGTATATGAATATGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGTGTGTATGTTTTTATACATATATATGTGTATATGAATATGTG  349

seq1  TATATATATACATATATTTATGCATTTATATTCTAGTTTTAAAATAAAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATACATATATTTATGCATTTATATTCTAGTTTTAAAATAAAGG  399

seq1  GGAAAGAGGCTCTAGAGAGACAGAGACATCATATCAATTAAGAACAGGGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGGCTCTAGAGAGACAGAGACATCATATCAATTAAGAACAGGGT  449

seq1  GTCTTTGAACTGACAAAGACAATCCTGCCTGATTTGTGGGTTCATGAATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGAACTGACAAAGACAATCCTGCCTGATTTGTGGGTTCATGAATT  499

seq1  AAAGGTGTGCCCAGCATACCAAGCCTCCTATTGTGCACACCCTGCCTATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTGCCCAGCATACCAAGCCTCCTATTGTGCACACCCTGCCTATT  549

seq1  AGTCCTTTGGACTTCAATAGGTAAAATGTGAAGGCTGAGGCCTGGATCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTGGACTTCAATAGGTAAAATGTGAAGGCTGAGGCCTGGATCCA  599

seq1  GGAAGTTAAAAATATCCTAAGACTGACTACTTATTTTCCCTTATGATACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTAAAAATATCCTAAGACTGACTACTTATTTTCCCTTATGATACT  649

seq1  TTTAATCATTTTCATATCAAACACATTCACTCTAGGAGCTAGAAAAGGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCATTTTCATATCAAACACATTCACTCTAGGAGCTAGAAAAGGGG  699

seq1  GCTGATGAGTTTTTAACAAGTATTGCTCTTGCCTAGCACCTGGGTTTCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGAGTTTTTAACAAGTATTGCTCTTGCCTAGCACCTGGGTTTCAT  749

seq1  TTATAATACATAAACATTTGCGGACAAAATTCTGGAACACCAAGTCCGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATACATAAACATTTGCGGACAAAATTCTGGAACACCAAGTCCGGG  799

seq1  GGTGAAATAACCTCTTCTGATGTCTGTGGGAAGCACACACACACATGGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAATAACCTCTTCTGATGTCTGTGGGAAGCACACACACACATGGGA  849

seq1  CACAGACAAAATACACATGCAAAGCATTCACACACTTAAAGCCAGTCAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACAAAATACACATGCAAAGCATTCACACACTTAAAGCCAGTCAAT  899

seq1  CTAAAAAGAGAAACATAAATATGTTGGTTGCTTCCATGTTGACTGTACCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAGAGAAACATAAATATGTTGGTTGCTTCCATGTTGACTGTACCT  949

seq1  ACTTCCAGGAGCTGGTATTATTTACTTTCTGTCATTTTATGAATTC  994
      |||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACTTCCAGGAGCCGGTATTATTTACTTTCTGTCATTTTATGAATTC  995

seq1: chr11_44156000_44156435
seq2: B6Ng01-228E05.g_598_1022 (reverse)

seq1  CCCCACAATGAATTCTGACAAAGACCACAAACCACCCTGACCTGTTGCTA  50
      |||||||||||||||||| ||||||||||||||| |||||||  ||||||
seq2  CCCCACAATGAATTCTGAAAAAGACCACAAACCA-CCTGACC--TTGCTA  47

seq1  -GAATCCCCCTGACATTAATAGCTATGATGTTAATTGCTGATCCATAAGT  99
       || |||   |||||||||||||| |||         |||| ||||||||
seq2  GGATTCCTTGTGACATTAATAGCTGTGA---------CTGACCCATAAGT  88

seq1  TCAAAATGTACTATTACTTTGCTGACCAAATCATAATAACTCACCATGGG  149
      || ||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  TC-AAATGTACTATTACTTTGCTGACCAAATCATAATAACCCACTATGGG  137

seq1  GGCAAGCAAAGTGAGTCACTAGGCCAAAGGGTTATTTAGTCATTATACAA  199
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  GGCAAGCAAAGTGAGTCACTAGGCCAAAGGGTTACTTAGTCACTATACAA  187

seq1  ACCAACCAATGCCTGAAAGGGTTACTTGCTATACCAATGAGAACCCTGTT  249
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACCAACCAATGCCTGAAAGGGTTACTTGCTACACCAATGAGAACCCTGTT  237

seq1  GCTCAAATCTGCCCCTTACAAAGGTAT-AAAAGTGTGTTCTTTCTTTGTT  298
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCTCAAATCTGCCCCTTACAAAGGTATAAAAAGTGTGTTCTTTCTTTGTT  287

seq1  CTGGGTCTCTCCTCTGGCCTGCATGCTGAAAGGGGAGTCCCCAGCATGTT  348
      |||||||||||||||||||||  |||||  ||||||||||||| ||||||
seq2  CTGGGTCTCTCCTCTGGCCTGTGTGCTGGGAGGGGAGTCCCCAACATGTT  337

seq1  GGATCAATAAAAATCCTCATGCAGTTTGCAGCGATGGTGGCGGTCTCTGT  398
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  GGATCAATAAAAATCCTCATGCAGTTTGCAGCAATGGCGGCGGTCTCTGT  387

seq1  GGTCCTTGTGAGTAAGGGTCTTTTGACAAACTCCAACA  436
      |||| |||||||| ||||||||||||| ||||||||||
seq2  GGTCTTTGTGAGTGAGGGTCTTTTGACGAACTCCAACA  425