BAC Information

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BAC

Clone NameB6Ng01-228K18
Chromosome11 (Build37)
Map Location 25,693,501 - 25,694,599
singlet/doubletsinglet
Overlap gene5730522E02Rik
Upstream geneLOC100042282
Downstream geneLOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228K18.bB6Ng01-228K18.g
ACCGA042028GA042029
length1,2341,115
definitionB6Ng01-228K18.b B6Ng01-228K18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgtttggttctatattccagtttttgattgagttgtttggtt
tctttggaggttagcttcatgagttctttacatattttggatattagccc
tctatcggatgtggggttagtgaagatatttttcccaatcagtagattgc
tgatttgtcccattgactatgtcctttgccttacagaagcttttaaattt
tatgaggtcttgtttatcaattcttgatcttagagcctgagccattggag
ttctatttagggaatttcctctgtgccagtaagtttgagactctttccta
cattctcttctattagattcagtgtatctggttctagattgaggtccttg
atccacctggactttcatattgatcaaagaaaaatctaccaagagaaagt
ctcaattctgaatatctatgccccaaatgcaagggcacccacattcataa
aagaaactttactaaagctcaaaacacacattgaactccacacaataata
gtggaagactcaacaccccactttcaccagtggatggataatggaaacag
aaactaaacagagacatagtgaaactaatagaggttatgaagaaaatgaa
tttacacagaacatttcaccctaaaacaaaagaatataccttcttcttgg
tacctcatagtaccttctccaaaactgatcatataatcggtcacaaagca
agtttcaactgatacaagaagattaaaataatcccatgcatactattaga
tcactttgtactaaggctaggcttcaataacaacaaaaataacagaaaac
tcacatacccatggaaactgaatacttctctactcaatgataacttgttc
agggaaagaattaaaagacttcctggatttcaatgaaaatgatgacacag
cacgcccaaacttttggggccacaatgaaagcagtgctaaagggaaaaat
tcataacactaagtgcacacatttattctattttcagtttattagtaaaa
gtctgctaataactattgcccaattattataattccatgagatgtttgcc
tcctcagttatatagcataaagtgtaatgattattcatggagtcttggat
ttataggcaaacacttttaaagaatgactttaacttacatttgggcttca
agcctctgatggctggttaggccattcaagactgttaggctaagagggta
agcctcctggtggatgaagacatcatctttcgcg
gaattcattttgtggagggtttgcatccaggctgaggtacctatgcatga
ctgacagcacaaggcagaccctgaaagctcattccagggagcacagaact
actgtggagttggaaagaatgtcttctcacacagtcttgatgactatttt
tggaaaccattctgtcaatatgtttgcaaaagactcttttatctcagcca
gtcatttttcagattcctgtcttataaaaatgtcagcacacaagaattca
atacaaccatatttattggtctactgttttaaagcagttttcaaaaagag
aactaactacctgctaatatagatatgcttggatgttcacaccaagatgc
aatggctgttatctaaatcaagttgctctgaagagtatctatgttataaa
gtactaaatgtacattttatgtgcatatacattaatacatatacatatat
tcatgtgcgtagttattctaccttttgtaaaacaaagaaatgtaaaattc
ttatgcaattaaattgaatattcataaataaatatgtgaaaagtgaccca
ttaagttgtcaagtgtttggtagagaacaaaaccagaaatggatatttac
catacagactgtttagtataggaatttttaggataatttgaagtgtttta
gcttgtaagtaactgttattagtgtcaactaattcacaatatgtgcatta
ttaagaaaaaagaagcccagttgcaaagggttcctatagagtaaacccat
ttatatataggcttgcatatagaagacaatatgaatgaatacttaaatgg
atatttgaaaatatgtgtgtgtggctcccttagtcacttccatgtttctt
ggctttctgtttgctcattaaacatgttcatttagaggagctgctggggg
gaacccaacaccgtccttagctttctgggaaccaacaccattctaaaact
ccctttccttactttttggttttgtcttgtttcagtttgtttctactgag
agcccaggttggccttagcctgctatcctcctgtctgggttctctttgag
ggctggcatttacaggtggtggaacttcaattcttcttcatttgggcttg
gaaggtcaaggagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_25693501_25694599
seq2: B6Ng01-228K18.g_68_1182

seq1  GAATTCATTTTGTGGAGGGTTTGCATCCAGGCTGAGGTACCTATGCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGTGGAGGGTTTGCATCCAGGCTGAGGTACCTATGCATGA  50

seq1  CTGACAGCACAAGGCAGACCCTGAAAGCTCATTCCAGGGAGCACAGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGCACAAGGCAGACCCTGAAAGCTCATTCCAGGGAGCACAGAACT  100

seq1  ACTGTGGAGTTGGAAAGAATGTCTTCTCACACAGTCTTGATGACTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGAGTTGGAAAGAATGTCTTCTCACACAGTCTTGATGACTATTTT  150

seq1  TGGAAACCATTCTGTCAATATGTTTGCAAAAGACTCTTTTATCTCAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCATTCTGTCAATATGTTTGCAAAAGACTCTTTTATCTCAGCCA  200

seq1  GTCATTTTTCAGATTCCTGTCTTATAAAAATGTCAGCACACAAGAATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTTCAGATTCCTGTCTTATAAAAATGTCAGCACACAAGAATTCA  250

seq1  ATACAACCATATTTATTGGTCTACTGTTTTAAAGCAGTTTTCAAAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACCATATTTATTGGTCTACTGTTTTAAAGCAGTTTTCAAAAAGAG  300

seq1  AACTAACTACCTGCTAATATAGATATGCTTGGATGTTCACACCAAGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACTACCTGCTAATATAGATATGCTTGGATGTTCACACCAAGATGC  350

seq1  AATGGCTGTTATCTAAATCAAGTTGCTCTGAAGAGTATCTATGTTATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGTTATCTAAATCAAGTTGCTCTGAAGAGTATCTATGTTATAAA  400

seq1  GTACTAAATGTACATTTTATGTGCATATACATTAATACATATACATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAAATGTACATTTTATGTGCATATACATTAATACATATACATATAT  450

seq1  TCATGTGCGTAGTTATTCTACCTTTTGTAAAACAAAGAAATGTAAAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGCGTAGTTATTCTACCTTTTGTAAAACAAAGAAATGTAAAATTC  500

seq1  TTATGCAATTAAATTGAATATTCATAAATAAATATGTGAAAAGTGACCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAATTAAATTGAATATTCATAAATAAATATGTGAAAAGTGACCCA  550

seq1  TTAAGTTGTCAAGTGTTTGGTAGAGAACAAAACCAGAAATGGATATTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTGTCAAGTGTTTGGTAGAGAACAAAACCAGAAATGGATATTTAC  600

seq1  CATACAGACTGTTTAGTATAGGAATTTTTAGGATAATTTGAAGTG-TTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CATACAGACTGTTTAGTATAGGAATTTTTAGGATAATTTGAAGTGTTTTA  650

seq1  GCTTGTAAGTAACTGTTATTAGTGTCAACTAATTCACAATATGTGCATTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTAAGTAACTGTTATTAGTGTCAACTAATTCACAATATGTGCATTA  700

seq1  TTAAGAAAAAAGAAGCCCAGTTGCAAAGGGTTCCTATAGAGTAAACCCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAAAAGAAGCCCAGTTGCAAAGGGTTCCTATAGAGTAAACCCAT  750

seq1  TTATATATAGGCTTGCATATAGAAGACAATATGAATGAATAC-TAAATGG  798
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTATATATAGGCTTGCATATAGAAGACAATATGAATGAATACTTAAATGG  800

seq1  ATA-TTGAAAATATGTGTGTGTGGCTTCCTTAGTCACTTCCATGTTTCTT  847
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATATTTGAAAATATGTGTGTGTGGCTCCCTTAGTCACTTCCATGTTTCTT  850

seq1  GGCTTTCTG-TTGCTCATTAAACATGTTCA-TTAGAGGAGCTGCT-GGGG  894
      ||||||||| |||||||||||||||||||| |||||||||||||| ||||
seq2  GGCTTTCTGTTTGCTCATTAAACATGTTCATTTAGAGGAGCTGCTGGGGG  900

seq1  GAACCCAACACCGTCCTAAGC-TTCTGGGAACCCAACACCATTCT-AAAC  942
      ||||||||||||||||| ||| ||||||||| ||||||||||||| ||||
seq2  GAACCCAACACCGTCCTTAGCTTTCTGGGAA-CCAACACCATTCTAAAAC  949

seq1  T-CCTTTCCTTACTTTT--GTTTTGTCTTGTTTCAGTTTG-TTCTACTGA  988
      | |||||||||||||||  ||||||||||||||||||||| |||||||||
seq2  TCCCTTTCCTTACTTTTTGGTTTTGTCTTGTTTCAGTTTGTTTCTACTGA  999

seq1  GAGCCCAGGTTGGCCTTAAGCCTGCGATCCTCCTGTCTGGG-TCTC-TTG  1036
      ||||||||||||||||| ||||||| ||||||||||||||| |||| |||
seq2  GAGCCCAGGTTGGCCTT-AGCCTGCTATCCTCCTGTCTGGGTTCTCTTTG  1048

seq1  AGGGCTGGCA-TTACAGGTG--TGAACTTCTATTCCTTCCTTCATTTGGG  1083
      |||||||||| |||||||||   ||||||| ||||  | |||||||||||
seq2  AGGGCTGGCATTTACAGGTGGTGGAACTTCAATTC--TTCTTCATTTGGG  1096

seq1  CT--GGAGGTCAA-GAGTA  1099
      ||  | ||||||| |||||
seq2  CTTGGAAGGTCAAGGAGTA  1115