BAC Information

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BAC

Clone NameB6Ng01-228P13
Chromosome11 (Build37)
Map Location 49,456,022 - 49,612,210
singlet/doubletdoublet
Overlap geneFlt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2
Upstream geneLOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380
Downstream geneMapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228P13.bB6Ng01-228P13.g
ACCGA042244GA042245
length1,2051,050
definitionB6Ng01-228P13.b B6Ng01-228P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,456,022 - 49,457,209)(49,611,166 - 49,612,210)
sequence
gaattcaagccctggaaagagagcaggcaggcaagagatagcacttgggt
ctaacatatatagtagacactgtgtcattccaacacggatcccacccatt
catccactaacatgccctcaatcctggacctcacagctgtgccatcccct
gtaagtccagagcccataaagcaggccaggcctctgccctggaggagaca
tacagatggtagtcacataatgagatgggacacagacaccctgggggcac
ctgaaaagcactagaaagtcagatgatcaggggaagagaggacattgagg
cgacactcgaggggactgaagatagctagaggatgatgggggacaggcag
aaggacagccagtgttaaaaatgaagtggagacaacagaacaaacatgag
ggacagaagtctgagtcctttttttttgcgttcctataacatactggaca
caggacactttataagggaaggaatgtttatttagctcagttctgagagt
tcaagagcagacatccctctctatcactcagctctggtgacggcctcctg
tctgcattgcagtctggcagatggcattgtgctaagagcccttgaaaggg
acagatcacatagtaagcaggaagcaagggaattgtatacaacagcccac
tctctggagagccaacccctagagaccagcattaatccattcataagccc
ccttgaccctgcagcgggcaccatctctgaaaggtccatcacctccatag
tggccaaccactctaggatcaagctcccatcacatgaaccttaggggaca
cactgactatcccaactgccatagtgatctaggagatgcaggagtgatgg
ggtcggctggtgggagggtcatggtgccctcagactacaggtcgacagcc
atctgcattcccacagacgccacatcatgcagagttgctgggtctggaga
accctaaaagcaagacctgcttttctctgaacctagtgggagaatcctgg
ggggaacctgccttcaagggcggaagctggcagtgaagcaccatctttgt
cctgtctgatatacacccaatggcctatctggggtccctgcccttatcta
tcttactaactctcctctaaagccctggttcactgtcagcctaacaaagg
aaaaggttcacaacaatccttgctaggcattctctccatgacccacagct
ccaac
gaattcaaatgctctaccacagggctggagaaatggctcagtggttaagg
gtgtatactgttcttccgaatgtctcaagctcagttcccatgagtgccaa
catcagtccaatgtgtgtaggtgtgctgtgattgcccctggtggcttcca
ggaaccagctgggtgctctcttttcccaattactcattcagggacttccc
gtgaccctctcctgaaactgtctatggtgagagtacgtatacaatggaag
ctaacaaaccaggagctcaagagatggctccagtgggtaagagtgaatac
tgctctagtagagaaccaagttccattcccaatacccatggtcaggtggt
tcacaactgcctgaaactccagctcccagagtctgtctatgttttcagca
actccaattctcaaaagatattgcttccttctgaagctacaaactctgaa
atgacacaagaaagagatgtgttctagatgatttgattttgtcagaagtc
ttctgatctccctgaatggacactaagcaattgacacagaagacgtgctc
tccagctgagataaaaggcaattcctctttatacagtggacgattctccc
ccaaaggctgcaacatacaagcagactctgtgtgtgtgcatgcacacatg
tatgtgtgcaattctggacaaatctggagaaataaaacccatggctgctt
ctcctagagacctaataaacaggcggagtgtgtaccatgtgaagggcaag
agatgctgtgaatgccttaccatatggcccagcaactaactattaaataa
aatgaggaagtctatttggtccaactaggaatgtggcactatgtccaatg
aagctggaggttattcaaatgatccttcactcgccttctgacagtgatgg
gtctagtctgagagtgctaggaccaggggtgctttgggtgtatgggggtt
tcaggaagccccgtttatgatctctgaattgggccctcaagtgccaggac
ttgagcagcagggatctaattatttgaaagactctgtagaagttttgctt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_49456022_49457209
seq2: B6Ng01-228P13.b_45_1249

seq1  GAATTCAAGCCCTGGAAAGAGAGCAGGCAGGCAAGAGATAGCACTTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCCCTGGAAAGAGAGCAGGCAGGCAAGAGATAGCACTTGGGT  50

seq1  CTAACATATATAGTAGACACTGTGTCATTCCAACACGGATCCCACCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATATATAGTAGACACTGTGTCATTCCAACACGGATCCCACCCATT  100

seq1  CATCCACTAACATGCCCTCAATCCTGGACCTCACAGCTGTGCCATCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACTAACATGCCCTCAATCCTGGACCTCACAGCTGTGCCATCCCCT  150

seq1  GTAAGTCCAGAGCCCATAAAGCAGGCCAGGCCTCTGCCCTGGAGGAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCCAGAGCCCATAAAGCAGGCCAGGCCTCTGCCCTGGAGGAGACA  200

seq1  TACAGATGGTAGTCACATAATGAGATGGGACACAGACACCCTGGGGGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGGTAGTCACATAATGAGATGGGACACAGACACCCTGGGGGCAC  250

seq1  CTGAAAAGCACTAGAAAGTCAGATGATCAGGGGAAGAGAGGACATTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGCACTAGAAAGTCAGATGATCAGGGGAAGAGAGGACATTGAGG  300

seq1  CGACACTCGAGGGGACTGAAGATAGCTAGAGGATGATGGGGGACAGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACACTCGAGGGGACTGAAGATAGCTAGAGGATGATGGGGGACAGGCAG  350

seq1  AAGGACAGCCAGTGTTAAAAATGAAGTGGAGACAACAGAACAAACATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGCCAGTGTTAAAAATGAAGTGGAGACAACAGAACAAACATGAG  400

seq1  GGACAGAAGTCTGAGTCCTTTTTTTTTGCGTTCCTATAACATACTGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAAGTCTGAGTCCTTTTTTTTTGCGTTCCTATAACATACTGGACA  450

seq1  CAGGACACTTTATAAGGGAAGGAATGTTTATTTAGCTCAGTTCTGAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACACTTTATAAGGGAAGGAATGTTTATTTAGCTCAGTTCTGAGAGT  500

seq1  TCAAGAGCAGACATCCCTCTCTATCACTCAGCTCTGGTGACGGCCTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGCAGACATCCCTCTCTATCACTCAGCTCTGGTGACGGCCTCCTG  550

seq1  TCTGCATTGCAGTCTGGCAGATGGCATTGTGCTAAGAGCCCTTGAAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTGCAGTCTGGCAGATGGCATTGTGCTAAGAGCCCTTGAAAGGG  600

seq1  ACAGATCACATAGTAAGCAGGAAGCAAGGGAATTGTATACAACAGCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCACATAGTAAGCAGGAAGCAAGGGAATTGTATACAACAGCCCAC  650

seq1  TCTCTGGAGAGCCAACCCCTAGAGACCAGCATTAATCCATTCATAAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGAGAGCCAACCCCTAGAGACCAGCATTAATCCATTCATAAGCCC  700

seq1  CCTTGACCCTGCAGCGGGCACCATCTCTGAAAGGTCCATCACCTCCATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACCCTGCAGCGGGCACCATCTCTGAAAGGTCCATCACCTCCATAG  750

seq1  TGGCCAACCACTCTAGGATCAAGCTCCCATCACATGAACCTTAGGGGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAACCACTCTAGGATCAAGCTCCCATCACATGAACCTTAGGGGACA  800

seq1  CACTGACTATCCCAACTGCCATAGTGATCTAGGAGATGCAGGAGTGATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTATCCCAACTGCCATAGTGATCTAGGAGATGCAGGAGTGATGG  850

seq1  GGTCGGCTGGTGGGAGGGTCATGGTGCCCTCAGACTACAGGTCGACAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGGCTGGTGGGAGGGTCATGGTGCCCTCAGACTACAGGTCGACAGCC  900

seq1  ATCTGCA-TCCCACAGACGCCACATCATGCAGAGTTGCT-GGTCTGGAG-  947
      ||||||| ||||||||||||||||||||||||||||||| ||||||||| 
seq2  ATCTGCATTCCCACAGACGCCACATCATGCAGAGTTGCTGGGTCTGGAGA  950

seq1  ACCCT-AAAGCAAGACCTGC-TTTCTCTG-ACCTAGT-GGAG-ATCCTGG  992
      ||||| |||||||||||||| |||||||| ||||||| |||| |||||||
seq2  ACCCTAAAAGCAAGACCTGCTTTTCTCTGAACCTAGTGGGAGAATCCTGG  1000

seq1  GGG--ACCTG-CTTC-AGGGCGGAGGCTGGCAGGTGAGCACCATCTTTGT  1038
      |||  ||||| |||| |||||||| ||||||||   ||||||||||||||
seq2  GGGGAACCTGCCTTCAAGGGCGGAAGCTGGCAGTGAAGCACCATCTTTGT  1050

seq1  CCTGTTCTG--ATACAACCCATGGCCTTATCCTGGGTCCCTG-CCTTATC  1085
      |||| ||||  ||||| || |||||| ||||  ||||||||| |||||||
seq2  CCTG-TCTGATATACACCCAATGGCC-TATCTGGGGTCCCTGCCCTTATC  1098

seq1  TATCTTCCCAA-ACTCCTCT-AAGCCCTGGTCACCTGTCAGC--TACCAA  1131
      |||||| | ||  ||||||| ||||||||||   ||||||||   || ||
seq2  TATCTTACTAACTCTCCTCTAAAGCCCTGGTTCACTGTCAGCCTAACAAA  1148

seq1  GGAAA--GGTCAC-ACATCTCTGGGCCTAGGCCTATCCTC-CCATTGCCC  1177
      |||||  | |||| |||   || |  ||||||  || ||| ||||  |||
seq2  GGAAAAGGTTCACAACAATCCTTG--CTAGGC--ATTCTCTCCATGACCC  1194

seq1  ACAGCTCCAAC  1188
      |||||||||||
seq2  ACAGCTCCAAC  1205

seq1: chr11_49611166_49612210
seq2: B6Ng01-228P13.g_68_1117 (reverse)

seq1  AAGCAAAACCTCTACAGAGTCTTTTCAAATATTTAGAATCCTGGCTGCTC  50
      ||||||||| ||||||||||| ||||||||| |||| ||||  |||||||
seq2  AAGCAAAACTTCTACAGAGTC-TTTCAAATAATTAG-ATCCCTGCTGCTC  48

seq1  AAGT-CTTGCCCTTGAGGGCCCAATTCAGAGATTCATAAAC-GGGCTTCC  98
      |||| || || ||||||||||||||||||||| |||||||| ||||||||
seq2  AAGTCCTGGCACTTGAGGGCCCAATTCAGAGA-TCATAAACGGGGCTTCC  97

seq1  TG-AACCCCCATACACCC-AAGCA-CCCTGGTCCTAGCACTCTCAGACTA  145
      || ||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  TGAAACCCCCATACACCCAAAGCACCCCTGGTCCTAGCACTCTCAGACTA  147

seq1  GACCCATCACTGTCAGAAGGCGAGTGAAAGATCATTTGAAT-ACCTCCAG  194
      |||||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  GACCCATCACTGTCAGAAGGCGAGTGAAGGATCATTTGAATAACCTCCAG  197

seq1  CTTCA-TGGACATAGTGCCACATTCCTAGTTGGACCAAATAGACTTCCTC  243
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTGGACATAGTGCCACATTCCTAGTTGGACCAAATAGACTTCCTC  247

seq1  A-TTTATTTAATAGTTAGTTGCTGGGCCATATGGTAAGGCATTCACAGCA  292
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTAATAGTTAGTTGCTGGGCCATATGGTAAGGCATTCACAGCA  297

seq1  TCTCTTGCCCTTCACATGGTACACACTCCGCCTGTTTATTAGGTCTCTAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGCCCTTCACATGGTACACACTCCGCCTGTTTATTAGGTCTCTAG  347

seq1  GAGAAGCAGCCATGGGTTTTATTTCTCCAGATTTGTCCAGAATTGCACAC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAGCCATGGGTTTTATTTCTCCAGATTTGTCCAGAATTGCACAC  397

seq1  ATACATGTGTGCATGCACACACACAGAGTCTGCTTGTATGTTGCAGCCTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTGTGCATGCACACACACAGAGTCTGCTTGTATGTTGCAGCCTT  447

seq1  TGGGGGAGAATCGTCCACTGTATAAAGAGGAATTGCCTTTTATCTCAGCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGAATCGTCCACTGTATAAAGAGGAATTGCCTTTTATCTCAGCT  497

seq1  GGAGAGCACGTCTTCTGTGTCAATTGCTTAGTGTCCATTCAGGGAGATCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCACGTCTTCTGTGTCAATTGCTTAGTGTCCATTCAGGGAGATCA  547

seq1  GAAGACTTCTGACAAAATCAAATCATCTAGAACACATCTCTTTCTTGTGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTTCTGACAAAATCAAATCATCTAGAACACATCTCTTTCTTGTGT  597

seq1  CATTTCAGAGTTTGTAGCTTCAGAAGGAAGCAATATCTTTTGAGAATTGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAGAGTTTGTAGCTTCAGAAGGAAGCAATATCTTTTGAGAATTGG  647

seq1  AGTTGCTGAAAACATAGACAGACTCTGGGAGCTGGAGTTTCAGGCAGTTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTGAAAACATAGACAGACTCTGGGAGCTGGAGTTTCAGGCAGTTG  697

seq1  TGAACCACCTGACCATGGGTATTGGGAATGGAACTTGGTTCTCTACTAGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCACCTGACCATGGGTATTGGGAATGGAACTTGGTTCTCTACTAGA  747

seq1  GCAGTATTCACTCTTACCCACTGGAGCCATCTCTTGAGCTCCTGGTTTGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATTCACTCTTACCCACTGGAGCCATCTCTTGAGCTCCTGGTTTGT  797

seq1  TAGCTTCCATTGTATACGTACTCTCACCATAGACAGTTTCAGGAGAGGGT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCCATTGTATACGTACTCTCACCATAGACAGTTTCAGGAGAGGGT  847

seq1  CACGGGAAGTCCCTGAATGAGTAATTGGGAAAAGAGAGCACCCAGCTGGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGAAGTCCCTGAATGAGTAATTGGGAAAAGAGAGCACCCAGCTGGT  897

seq1  TCCTGGAAGCCACCAGGGGCAATCACAGCACACCTACACACATTGGACTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAAGCCACCAGGGGCAATCACAGCACACCTACACACATTGGACTG  947

seq1  ATGTTGGCACTCATGGGAACTGAGCTTGAGACATTCGGAAGAACAGTATA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGCACTCATGGGAACTGAGCTTGAGACATTCGGAAGAACAGTATA  997

seq1  CACCCTTAACCACTGAGCCATTTCTCCAGCCCTGTGGTAGAGCATTTGAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTAACCACTGAGCCATTTCTCCAGCCCTGTGGTAGAGCATTTGAA  1047

seq1  TTC  1045
      |||
seq2  TTC  1050