BAC Information

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BAC

Clone NameB6Ng01-229D01
Chromosome16 (Build37)11 (Build37)
Map Location 50,847,887 - 50,848,46849,222,935 - 49,224,061
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik
Downstream geneEG639820, LOC627543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229D01.bB6Ng01-229D01.g
ACCGA042408GA042409
length7901,120
definitionB6Ng01-229D01.b B6Ng01-229D01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,847,887 - 50,848,468)(49,222,935 - 49,224,061)
sequence
gaattcctgatctttccagacttttatcatgaatgggtgttggattttgt
ccaatgatttctcgcatctaacgagatgatcatgtgggttttgtctttta
gtttgtttatatagtggatatgttgatggatttctgtatattgaaccatc
cctgcatctctggtatgaagcctacttgatgagttcgatgatctttttga
cgcgtacggaaaaccacactaactctgtaatattttttgaactaagtcac
tcatcatcatgttgtgtaatctgagttgaatcacacacctccatgtcact
cctccggatggcaccagtgtgctggcaccagagggacacatttggccgaa
gctttccttcttcccacacaggtacatccggatgtcacaagcactgtttg
tccttgccctttagcctttctcttaattgctgtcattgacagtgcaggat
ttaacatctaggggctggctgtaaagctctctgctgaggggactgggatt
tctttcaggatttccttccctatgttttgtatgcttttaggcagacgatg
ttgggtttgtttcccatgctcttcttgctggacaaagtatgtttttgttg
actgtcttagactctgtcagctatacaaatgagcttgtctgtgttggagc
tgtagtatgagggtcctagtatttggaatttcaagtcttcttgtctttta
aggaccaccacctacaaaaggaagatgttttattctttctctgagttaga
tgtatttctgagggttctattatgatatctctttgaggag
gaattcattgcagttattctagaaaaaacaaaattgctgggagtttttgc
tttcgtctttgtttccccagtgtgttgaatatgacatttcaacatttttc
aaggcatgcaacatgtacattctgtctccctattttcagtaccgtttcta
agctatcattgagaaaattgtgtttgcaacctgctaacctaataaataca
gtgtttaggtcatctttgggctcattgagacaatattcacatagttttta
aatgtttaaaatctgacaggtattaaatccataggtcatatttttattct
aagggtaattaattttctgggacttgggcctattcaaggctgatgccctc
attccaaacctcagaaaatcctctactttggagaaaatggaatgggttgc
ttcagttaccattctgtatcaagaaaaactagaacaaatttcttctgttg
tgaaccctggtgtcaaaacaataacaaaatagattaacaatgataattaa
atgtacttgtatacaaatatataccagaacttccatcagtatcatcactt
gggactggaaagatggctcagaggttaagagcactgctactatgcccgaa
gacctgggttcaattcccagcacccacatggcagatcacaactgtcttta
actccagttctatgggacccaacaccctcacacagccatacatcaagcaa
aacaccaatgtactggctggttttgtgtgtcaacttgacacagactagag
ttatcacagagaaaggagcttcagttgagaaaaatgcctccatgagatct
agctataaacattttctcaattagtgaccaagggagaagggcgccttgtg
ggtggtatcatctctagactggtagttttggttctataaaaaggcaagct
gataagccatgggaacctagcaagtaagtaacatccctccttggccttct
gcatcagctcctgcttcctgacctgtgtgatttccagtcctggcttcttt
gtgatgaacagcattgtagactgtagctgaattaaaccttcctccccaac
tgcttcttggtatgaatgtttgtccaggaaatgaaaatcttgacttaggt
acaacaatgtgcctaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_50847887_50848468
seq2: B6Ng01-229D01.b_249_831

seq1  GGAAAACCACACTAACTCTGTAATATTTTTTGAACTAAGTCACTCATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACCACACTAACTCTGTAATATTTTTTGAACTAAGTCACTCATCAT  50

seq1  CATGTTGTGTAATCTGAGTTGAATCACACACCTCCATGTCACTCCTCCAG  100
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATGTTGTGTAATCTGAGTTGAATCACACACCTCCATGTCACTCCTCCGG  100

seq1  ATGGCACCAGTGTGCTGGCACCAGAGGGACACATTTGGCCGAAGCTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACCAGTGTGCTGGCACCAGAGGGACACATTTGGCCGAAGCTTTCC  150

seq1  TTCTTCCCACACAGGTACATCCGGATGTCACAAGCACTGTTTGTCCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCACACAGGTACATCCGGATGTCACAAGCACTGTTTGTCCTTGC  200

seq1  CCTTTAGCCTTTCTCTTAATTGCTGTCATTGACAGTGCAGGATTTAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGCCTTTCTCTTAATTGCTGTCATTGACAGTGCAGGATTTAACAT  250

seq1  CTAGGGGCTGGCTGTAAAGCTCTCTGCTGAGGGGACTGGGATTTCTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGGCTGGCTGTAAAGCTCTCTGCTGAGGGGACTGGGATTTCTTTCA  300

seq1  GGATTTCCTTCCCTATGTTTTGTATGCTTTTAGGCAGACGATGTTGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCCTTCCCTATGTTTTGTATGCTTTTAGGCAGACGATGTTGGGTT  350

seq1  TGTTTCCCATGCTCTTCTTGCTGGACAAAGTATGTTTTTGTTGACTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCCATGCTCTTCTTGCTGGACAAAGTATGTTTTTGTTGACTGTCT  400

seq1  TAGACTCTGTCAGCTATACAAATGAGCTTGTCTGTGTTGGAGCTGTAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCTGTCAGCTATACAAATGAGCTTGTCTGTGTTGGAGCTGTAGTA  450

seq1  GGAGGGTCCTAGTATTTGGAA-TTCAAGTCTTCTTGTCTTTTAAGGACCA  499
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGAGGGTCCTAGTATTTGGAATTTCAAGTCTTCTTGTCTTTTAAGGACCA  500

seq1  CCACCTACAAAAGGAAGATGTTTTATTCTTTCTCTGAGTTAGATGTATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTACAAAAGGAAGATGTTTTATTCTTTCTCTGAGTTAGATGTATTT  550

seq1  CTGAGGGTTCTATTATGATATCTCTTTGAGGAG  582
      |||||||||||||||||||||||||||||||||
seq2  CTGAGGGTTCTATTATGATATCTCTTTGAGGAG  583

seq1: chr11_49222935_49224061
seq2: B6Ng01-229D01.g_65_1184 (reverse)

seq1  TATTTTATGCACATTGGTTGT--CTTAGTC-AGATTTTCTATTCCTGGAC  47
      ||||||| ||||||| |||||  || |||| ||||||||  |||||||||
seq2  TATTTTAGGCACATT-GTTGTACCTAAGTCAAGATTTTCATTTCCTGGAC  49

seq1  AAAACATCATAACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCT  97
      |||   |||| |||||||||| ||||||||||| |||| || ||||||| 
seq2  AAACATTCAT-ACCAAGAAGC-AGTTGGGGAGG-AAGGTTTAATTCAGC-  95

seq1  TACAGTTCTACATTGCTGTTCATCACCAAAAGAAGCCAGGACTGGAATTC  147
      ||||| |||||| |||||||||||||  ||||||||||||||||||| ||
seq2  TACAG-TCTACAATGCTGTTCATCAC--AAAGAAGCCAGGACTGGAAATC  142

seq1  ACACAGGTCAGGAAGCAGGAGCTGATGCAG-AGGCCAAGGAGGGATGTTA  196
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACACAGGTCAGGAAGCAGGAGCTGATGCAGAAGGCCAAGGAGGGATGTTA  192

seq1  CTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCTTGCCTTTTTATAGAACC  246
      |||||| ||| | ||||| ||||||  ||||||||||||||||||||| |
seq2  CTTACTTGCTAGGTTCCCATGGCTT-ATCAGCTTGCCTTTTTATAGAA-C  240

seq1  CAAAACTACCAGTCCAGAGATGATACCACCCACAAGGCGCCCTTCTCCCT  296
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAAAACTACCAGTCTAGAGATGATACCACCCACAAGGCGCCCTTCTCCCT  290

seq1  TGGTCACTAATTGAGAAAATGCTTTATAGCTAGATCTCATGGAGGCATTT  346
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGGTCACTAATTGAGAAAATG-TTTATAGCTAGATCTCATGGAGGCATTT  339

seq1  TTCTCAACTGAAGCTCCTTTCTCTGTGATAACTCTAGTCTGTGTCAAGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACTGAAGCTCCTTTCTCTGTGATAACTCTAGTCTGTGTCAAGTT  389

seq1  GACACACAAAACCAGCCAGTACATTGGTGTTTTGCTTGATGTATGGCTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACAAAACCAGCCAGTACATTGGTGTTTTGCTTGATGTATGGCTGT  439

seq1  GTGAGGGTGTTGGGTCCCATAGAACTGGAGTTAAAGACAGTTGTGATCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGTGTTGGGTCCCATAGAACTGGAGTTAAAGACAGTTGTGATCTG  489

seq1  CCATGTGGGTGCTGGGAATTGAACCCAGGTCTTCGGGCATAGTAGCAGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGGTGCTGGGAATTGAACCCAGGTCTTCGGGCATAGTAGCAGTG  539

seq1  CTCTTAACCTCTGAGCCATCTTTCCAGTCCCAAGTGATGATACTGATCGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCTTAACCTCTGAGCCATCTTTCCAGTCCCAAGTGATGATACTGATGGA  589

seq1  AGTTCTGGTATATATTTGTATACAAGTACATTTAATTATCATTGTTAATC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGGTATATATTTGTATACAAGTACATTTAATTATCATTGTTAATC  639

seq1  TATTTTGTTATTGTTTTGACACCAGGGTTCACAACAGAAGAAATTTGTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTATTGTTTTGACACCAGGGTTCACAACAGAAGAAATTTGTTC  689

seq1  TAGTTTTTCTTGATACAGAATGGTAACTGAAGCAACCCATTCCATTTTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTCTTGATACAGAATGGTAACTGAAGCAACCCATTCCATTTTCT  739

seq1  CCAAAGTAGAGGATTTTCTGAGGTTTGGAATGAGGGCATCAGCCTTGAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTAGAGGATTTTCTGAGGTTTGGAATGAGGGCATCAGCCTTGAAT  789

seq1  AGGCCCAAGTCCCAGAAAATTAATTACCCTTAGAATAAAAATATGACCTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAAGTCCCAGAAAATTAATTACCCTTAGAATAAAAATATGACCTA  839

seq1  TGGATTTAATACCTGTCAGATTTTAAACATTTAAAAACTATGTGAATATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTAATACCTGTCAGATTTTAAACATTTAAAAACTATGTGAATATT  889

seq1  GTCTCAATGAGCCCAAAGATGACCTAAACACTGTATTTATTAGGTTAGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAATGAGCCCAAAGATGACCTAAACACTGTATTTATTAGGTTAGCA  939

seq1  GGTTGCAAACACAATTTTCTCACTGATAGCTTAGAAACGGTACTGAAAAT  996
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGTTGCAAACACAATTTTCTCAATGATAGCTTAGAAACGGTACTGAAAAT  989

seq1  AGGGAGACAGAATGTACATGTTGCATGCCTTGAAAAATGTTGAAATGTCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACAGAATGTACATGTTGCATGCCTTGAAAAATGTTGAAATGTCA  1039

seq1  TATTCAACACACTGGGGAAACAAAGATGAAAGCAAAAACTCCCAGCAATT  1096
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATTCAACACACTGGGGAAACAAAGACGAAAGCAAAAACTCCCAGCAATT  1089

seq1  TTGTTTTTTCTAGAATAACTGCACTGAATTC  1127
      ||||||||||||||||||||||| |||||||
seq2  TTGTTTTTTCTAGAATAACTGCAATGAATTC  1120