BAC Information

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BAC

Clone NameB6Ng01-229N07
Chromosome15 (Build37)11 (Build37)
Map Location 98,630,664 - 98,630,870107,568,320 - 107,568,442
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneHdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1
Downstream geneDdn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229N07.bB6Ng01-229N07.g
ACCGA042855GA042856
length20795
definitionB6Ng01-229N07.b B6Ng01-229N07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(98,630,664 - 98,630,870)(107,568,320 - 107,568,442)
sequence
caaggcaacatgggaaaagcaatgaggctctgcctctggctaaagaaaca
caggatcttttgtgagaagaatcaaaagagtgatgacagagagttttgag
ctgggagtatcttattgtacttcagttctgaatacttccctggctctcca
tcgtgacctttgctgtgctttctctttttggttggttggtttggtgtggg
ttagtga
caggacatccagggctacacaaagaaactctttctggaaaaagtggagag
agagagagagagagagagagagagagagagagagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_98630664_98630870
seq2: B6Ng01-229N07.b_51_257 (reverse)

seq1  TCACTAACCCACACCAAACCAACCAACCAAAAAGAGAAAGCACAGCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAACCCACACCAAACCAACCAACCAAAAAGAGAAAGCACAGCAAAG  50

seq1  GTCACGATGGAGAGCCAGGGAAGTATTCAGAACTGAAGTACAATAAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGATGGAGAGCCAGGGAAGTATTCAGAACTGAAGTACAATAAGATA  100

seq1  CTCCCAGCTCAAAACTCTCTGTCATCACTCTTTTGATTCTTCTCACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCTCAAAACTCTCTGTCATCACTCTTTTGATTCTTCTCACAAAA  150

seq1  GATCCTGTGTTTCTTTAGCCAGAGGCAGAGCCTCATTGCTTTTCCCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGTGTTTCTTTAGCCAGAGGCAGAGCCTCATTGCTTTTCCCATGT  200

seq1  TGCCTTG  207
      |||||||
seq2  TGCCTTG  207

seq1: chr11_107568320_107568442
seq2: B6Ng01-229N07.g_79_169 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50

seq1  CTCTCTCCCTCTCTTTCTCTCTCTCTTCTCTCTCCTTTTTTGAGATAGGG  100
      |                                 ||||||  ||| || |
seq2  C--------------------------------ACTTTTTCCAGAAAGAG  68

seq1  TTTCTCTGTGTAGCCCTGGATGT  123
      ||||| |||||||||||||||||
seq2  TTTCTTTGTGTAGCCCTGGATGT  91