BAC Information

Click to search

BAC

Clone NameB6Ng01-230A21
Chromosome11 (Build37)
Map Location 95,720,706 - 95,842,047
singlet/doubletdoublet
Overlap geneB4galnt2, Igf2bp1
Upstream geneLOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014
Downstream geneLOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230A21.bB6Ng01-230A21.g
ACCGA043022GA043023
length1,1301,141
definitionB6Ng01-230A21.b B6Ng01-230A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,840,907 - 95,842,047)(95,720,706 - 95,721,844)
sequence
gaattcaccccaagtctttcctaagcgctttacaaacactatctaatgcc
acctcccacttgtgaatggggtttatccttgttgtacaaagcggggggag
accaggtctcaaagaacttaagtaatcttctaatgtgctaataagtggtt
tagatccctagttgtgccaagggcttaaccactgtactattattatctta
tgcaattgttcgcatatattgtttcccttaatacgatgtgagcgcctggg
tcaggcattccgccacttttgttcattgctgtgccccagtcctgcgagca
aagtacagcttgaagtaggtgctagttaaagaggtgttggattaattaat
agttaccgtcttacttgactttggatttgctttattttaagtacgtatgt
gtgggtatgtaaccagtgggtcaggtgctggagatgagctggggttcaag
cagttgtgagctgcctctcacatgggctctaggagcgggactcctgtcct
ataagagccccaagcaccctttctctagcttcttggctttgttttgatgg
agagagaagtatgggaccgctgtagcaagcatcaaaacagtatgttcgat
cttctgctgccgttacgctgagaacatctggttccgagttcctctctgac
gtcctattagtgctcgggcttatagggtgaagccttgtttgctcgaaagt
ctgcatccttactgggttgctagtctgtgtttctttgttttttcctgaga
tgaggtctcactgtttattccggctgtcctgtaattaactatggagatca
ggttggcctggaaactcagagatctgcttgtctctgcctcttaagagctt
ggattaaaggcaactgctcccagtttaggttactatttttagggctgggg
atctagcttgtgccagaccatgaattcagtccctagcactggggaaggaa
gcaaccatcctatgttttggtgaactaacagctgggacaggatagaactg
ccaggtcatgggccaaagcatctggaattgtctaaatcatgtttgccctt
tcttttcagagtcggaaaataccagatccgcatatcaactcagcttcgat
tgcagtccgctggagaagtaaatgttacag
gaattccaaacgttcatgggccccgaggtgtctgtcacctcttccggtga
tcctccaagggtcccggctcttgaccccaagtctcgagggcggctggtcg
tccgatcggaccaagtccggagaaagccggctccggtcccggactccggg
caggaggttcggcgcacgcagcctgggctttctacttgttttctgcgttt
atatcaggagggctgtggctaggacgctttggcccagcggggaaggacgc
ggactggcacgtggtggcacagccgttcaaaccccggacgaaacctgggg
tacagacggggatgctggagagtgcgccgcacgtggatgccgcagcccct
gctccgcgctatgcaaattatctgtagggagattggcgcttccaattcag
cacttccccccgcgcttcaaaaggccggactaccgaaacttctagtgtgc
cgatccttagaaaaacccagtcagaattttaacaacagacacccaccatt
caacacaccacgcgcacacacacacatatcccgcaaaacaacaacaaaat
ccccacttctgcactgtctagtctttcattttccctaaatgtgtttctgc
aggtcagtcaacactttgactcagcagttcaccttcggagcattacccta
gtggacatccatctgtgcctcgaggctgcttcaaggatgctctggactat
gtattgtttattataatatagtgaggcttggccccataatgatggctatt
gtataagtcctctacaagagtttaagaaataacctgtgtgcgaggctcag
ataagcactagggacaccaggaatgttaactacacaggaatgtctgttta
gtgagagagatgtatgacgtgtcttctgcccagaaagctgggagcagatg
tgggtaatggcctgtgacctgagactgataggctgagatctcaccagttc
ctccctgggactcttatcggtgagcatgtttttctcagtctatagaaact
attctttctggagatgtcacaatgtactttacaaagagttccagtgcagt
gtgtcctaaggctgtgctgttgccacaggtgattgggttattatcaacag
gtaaggttcaccaaataactacttggggtcaggccttgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_95840907_95842047
seq2: B6Ng01-230A21.b_28_1157 (reverse)

seq1  CTGT-ACATTAACTTCTCCAAACACTTACTTCCCATCGGAGCTGAGGTGG  49
      |||| ||||| |||||||||    |  || | | |||| ||||||| || 
seq2  CTGTAACATTTACTTCTCCA---GCGGAC-TGCAATCGAAGCTGAGTTG-  45

seq1  AATATTGCGGATCT-GTATTTTCCGACTCCTGAAAAGAAAGGGCAAAACA  98
       ||| ||||||||| ||||||||||||| ||||||||||||||| |||||
seq2  -ATA-TGCGGATCTGGTATTTTCCGACT-CTGAAAAGAAAGGGC-AAACA  91

seq1  TGATTTAGACAATTCCAGATGCTTTGGGCCCATGACCTGGCAGTTTCTAA  148
      ||||||||||||||||||||||||| ||||||||||||||||| |||| |
seq2  TGATTTAGACAATTCCAGATGCTTT-GGCCCATGACCTGGCAG-TTCT-A  138

seq1  TCCTTGTCCCAGCTTGTTAGTTCACCAAAACCATAGGATGGTGGCTTCC-  197
      ||| ||||||||| |||||||||||||||| ||||||||||| |||||| 
seq2  TCC-TGTCCCAGC-TGTTAGTTCACCAAAA-CATAGGATGGTTGCTTCCT  185

seq1  TCCCCAGTGCTAGGGACTGAATTCATGGTCTGGCACAAGCTAGATCCCCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGTGCTAGGGACTGAATTCATGGTCTGGCACAAGCTAGATCCCCA  235

seq1  GCCCTAAAAATAGTAACCTAAACTGGGAGCAGTTGCCTTTAATCCAAGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAAAAATAGTAACCTAAACTGGGAGCAGTTGCCTTTAATCCAAGCT  285

seq1  CTTAAGAGGCAGAGACAAGCAGATCTCTGAG-TTCCAGGCCAACCTGATC  346
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTAAGAGGCAGAGACAAGCAGATCTCTGAGTTTCCAGGCCAACCTGATC  335

seq1  TCCATAGTTAATTACAGGACAGCCGGAATAAACAGTGAGACCTCATCTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGTTAATTACAGGACAGCCGGAATAAACAGTGAGACCTCATCTCA  385

seq1  GGAAAAAACAAAGAAACACAGACTAGCAACCCAGTAAGGATGCAGACTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAACAAAGAAACACAGACTAGCAACCCAGTAAGGATGCAGACTTT  435

seq1  CGAGCAAACAAGGCTTCACCCTATAAGCCCGAGCACTAATAGGACGTCAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCAAACAAGGCTTCACCCTATAAGCCCGAGCACTAATAGGACGTCAG  485

seq1  AGAGGAACTCGGAACCAGATGTTCTCAGCGTAACGGCAGCAGAAGATCGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAACTCGGAACCAGATGTTCTCAGCGTAACGGCAGCAGAAGATCGA  535

seq1  ACATACTGTTTTGATGCTTGCTACAGCGGTCCCATACTTCTCTCTCCATC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTGTTTTGATGCTTGCTACAGCGGTCCCATACTTCTCTCTCCATC  585

seq1  AAAACAAAGCCAAGAAGCTAGAGAAAGGGTGCTTGGGGCTCTTATAGGAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGCCAAGAAGCTAGAGAAAGGGTGCTTGGGGCTCTTATAGGAC  635

seq1  AGGAGTCCCGCTCCTAGAGCCCATGTGAGAGGCAGCTCACAACTGCTTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCCCGCTCCTAGAGCCCATGTGAGAGGCAGCTCACAACTGCTTGA  685

seq1  ACCCCAGCTCATCTCCAGCACCTGACCCACTGGTTACATACCCACACATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGCTCATCTCCAGCACCTGACCCACTGGTTACATACCCACACATA  735

seq1  CGTACTTAAAATAAAGCAAATCCAAAGTCAAGTAAGACGGTAACTATTAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACTTAAAATAAAGCAAATCCAAAGTCAAGTAAGACGGTAACTATTAA  785

seq1  TTAATCCAACACCTCTTTAACTAGCACCTACTTCAAGCTGTACTTTGCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCAACACCTCTTTAACTAGCACCTACTTCAAGCTGTACTTTGCTC  835

seq1  GCAGGACTGGGGCACAGCAATGAACAAAAGTGGCGGAATGCCTGACCCAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACTGGGGCACAGCAATGAACAAAAGTGGCGGAATGCCTGACCCAG  885

seq1  GCGCTCACATCGTATTAAGGGAAACAATATATGCGAACAATTGCATAAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTCACATCGTATTAAGGGAAACAATATATGCGAACAATTGCATAAGA  935

seq1  TAATAATAGTACAGTGGTTAAGCCCTTGGCACAACTAGGGATCTAAACCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAGTACAGTGGTTAAGCCCTTGGCACAACTAGGGATCTAAACCA  985

seq1  CTTATTAGCACATTAGAAGATTACTTAAGTTCTTTGAGACCTGGTCTCCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAGCACATTAGAAGATTACTTAAGTTCTTTGAGACCTGGTCTCCC  1035

seq1  CCCGCTTTGTACAACAAGGATAAACCCCATTCACAAGTGGGAGGTGGCAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTTTGTACAACAAGGATAAACCCCATTCACAAGTGGGAGGTGGCAT  1085

seq1  TAGATAGTGTTTGTAAAGCGCTTAGGAAAGACTTGGGGTGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGTGTTTGTAAAGCGCTTAGGAAAGACTTGGGGTGAATTC  1130

seq1: chr11_95720706_95721844
seq2: B6Ng01-230A21.g_69_1209

seq1  GAATTCCAAACGTTCATGGGCCCCGAGGTGTCTGTCACCTCTTCCGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACGTTCATGGGCCCCGAGGTGTCTGTCACCTCTTCCGGTGA  50

seq1  TCCTCCAAGGGTCCCGGCTCTTGACCCCAAGTCTCGAGGGCGGCTGGTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAAGGGTCCCGGCTCTTGACCCCAAGTCTCGAGGGCGGCTGGTCG  100

seq1  TCCGATCGGACCAAGTCCGGAGAAAGCCGGCTCCGGTCCCGGACTCCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATCGGACCAAGTCCGGAGAAAGCCGGCTCCGGTCCCGGACTCCGGG  150

seq1  CAGGAGGTTCGGCGCACGCAGCCTGGGCTTTCTACTTGTTTTCTGCGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGTTCGGCGCACGCAGCCTGGGCTTTCTACTTGTTTTCTGCGTTT  200

seq1  ATATCAGGAGGGCTGTGGCTAGGACGCTTTGGCCCAGCGGGGAAGGACGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGGAGGGCTGTGGCTAGGACGCTTTGGCCCAGCGGGGAAGGACGC  250

seq1  GGACTGGCACGTGGTGGCACAGCCGTTCAAACCCCGGACGAAACCTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGCACGTGGTGGCACAGCCGTTCAAACCCCGGACGAAACCTGGGG  300

seq1  TACAGACGGGGATGCTGGAGAGTGCGCCGCACGTGGATGCCGCAGCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACGGGGATGCTGGAGAGTGCGCCGCACGTGGATGCCGCAGCCCCT  350

seq1  GCTCCGCGCTATGCAAATTATCTGTAGGGAGATTGGCGCTTCCAATTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGCGCTATGCAAATTATCTGTAGGGAGATTGGCGCTTCCAATTCAG  400

seq1  CACTTCCCCCCGCGCTTCAAAAGGCCGGACTACCGAAACTTCTAGTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCCCCCGCGCTTCAAAAGGCCGGACTACCGAAACTTCTAGTGTGC  450

seq1  CGATCCTTAGAAAAACCCAGTCAGAATTTTAACAACAGACACCCACCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCCTTAGAAAAACCCAGTCAGAATTTTAACAACAGACACCCACCATT  500

seq1  CAACACACCACGCGCACACACACACATATCCCGCAAAACAACAACAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACACCACGCGCACACACACACATATCCCGCAAAACAACAACAAAAT  550

seq1  CCCCACTTCTGCACTGTCTAGTCTTTCATTTTCCCTAAATGTGTTTCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTTCTGCACTGTCTAGTCTTTCATTTTCCCTAAATGTGTTTCTGC  600

seq1  AGGTCAGTCAACACTTTGACTCAGCAGTTCACCTTCGGAGCATTACCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGTCAACACTTTGACTCAGCAGTTCACCTTCGGAGCATTACCCTA  650

seq1  GTGGACATCCATCTGTGCCTCGAGGCTGCTTCAAGGATGCTCTGGACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACATCCATCTGTGCCTCGAGGCTGCTTCAAGGATGCTCTGGACTAT  700

seq1  GTATTGTTTATTATAATATAGTGAGGCTTGGCCCCATAATGATGGCTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTTTATTATAATATAGTGAGGCTTGGCCCCATAATGATGGCTATT  750

seq1  GTATAAGTCCTCTACAAGAGTTTAAGAAATAACCTGTGTGCGAGGCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGTCCTCTACAAGAGTTTAAGAAATAACCTGTGTGCGAGGCTCAG  800

seq1  ATAAGCACTAGGGACACCAGGAATGTTAACTACACAGGAATGTCTGTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCACTAGGGACACCAGGAATGTTAACTACACAGGAATGTCTGTTTA  850

seq1  GTGAGAGAGATGTATGACGTGTCTTCTGCCCAGAAGGCTGGGAGCAGATG  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGAGAGAGATGTATGACGTGTCTTCTGCCCAGAAAGCTGGGAGCAGATG  900

seq1  TGGGTAATGGCCTGTGACCTGAGACTGATAGGCTGAGATCTCACCAGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAATGGCCTGTGACCTGAGACTGATAGGCTGAGATCTCACCAGTTC  950

seq1  CTCCCT-GGACTCTTATCGGTGAGCATGTTTTTCTCAGTCTATAGAAACT  999
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGGGACTCTTATCGGTGAGCATGTTTTTCTCAGTCTATAGAAACT  1000

seq1  A-TCTTTCTGGAAGATGTCAC-ATGTACTTTACAAAGAGTTCCAGTGCAG  1047
      | ||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  ATTCTTTCTGG-AGATGTCACAATGTACTTTACAAAGAGTTCCAGTGCAG  1049

seq1  TGGTGTCCTAA-GCTGTGCTGT--GCACAGGTGATTGGGTTAATTATCAC  1094
      | ||||||||| ||||||||||   |||||||||||||||| ||||||| 
seq2  T-GTGTCCTAAGGCTGTGCTGTTGCCACAGGTGATTGGGTT-ATTATCAA  1097

seq1  CAGGTAAGTTTTCACCAAATAAACTACTTGGGGTCAGG-CTTGCAA  1139
      ||||||||  |||||||||| ||||||||||||||||| |||||||
seq2  CAGGTAAG-GTTCACCAAAT-AACTACTTGGGGTCAGGCCTTGCAA  1141