BAC Information

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BAC

Clone NameB6Ng01-230A22
Chromosome11 (Build37)
Map Location 5,471,549 - 5,472,698
singlet/doubletsinglet
Overlap geneAnkrd36
Upstream geneMtmr3, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183
Downstream geneLOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230A22.bB6Ng01-230A22.g
ACCGA043024GA043025
length1,1511,198
definitionB6Ng01-230A22.b B6Ng01-230A22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttggttaaaaaaatggtttagaataagttaattgacaaaggaa
gtttcagagcacacgattttatgtatccataaaaatatttgagaaaactg
tattaatattacattaaatattcttcaaataggtcaccaaagtttctttt
aaaatataatttaaatattttcaccagtttttctaatgagagtaaaatga
gacatgaaaacaaaatttctcttagaatttggccaggcatggtggctcac
acctttgatcctggctcttgggaagccgaggcaggaagatctccgtgagt
ttgaggccagtctgtaaccagtgagacccagttttaacaagcaaacaaat
gaaactgtctagaatcagacttgacccgaaaactcaaacaaaagtgcttt
atggtaaatgaaaaatcatactgctagtgacactttaaaatgacttctcc
ctgaggtgaggctgggtcacaaaaaatggtgagaagaaaattatcttaaa
agtgcaggatgagtcggaatgtacggtcctcattggcaaagataaggaaa
gtcgtgtggtttaattctgccctgtttgtatgtttggaaaactgtgtctt
catttttacctgagaagggaatggttgagcttcaagcatgttcagtgttt
ggactcagagtcaaatgccaggagctgggatagtggcagttatgggtgaa
accaggggaagaccagttaatttgggggtatatattcccaatttctgtca
gtaagtaccatttagataagattttaaactctgctctcaagtctctatgt
cttgctggcagatgaacaatacattgtattttttgttttgggttttgctt
tgttttgttttgttttgtttgtttttagcatacgagatgggcacttgcta
ggcaaagggcccaggttcaggtctccctactcacatattccctcaaacca
ttggtaactgcagtttctcagaaggattggtctcttcttctgacttccac
aggcactgcattgcaggaggcacaacacatatagaccaacacccatgcca
cataaacaaaaaggaatatattcttctttaaaaatattaaaatatctcat
gggacttcttggagttggccaaacatggattccaggaaggaaaaccattt
g
gaattccatggctgtggcattgtccccaactcacatacacactggctcag
gacttctcactagggctcttcagctcccacaatgccctactgacaaactt
gggtctccagggatgctattgttgctcacggggtttattcaaatggtttt
tgatcattgcagatcaaggcagagcgttcctccactaacttggatgaatt
atggaagtactggcaggacttggtgagttcatgcttaaaaaataattgta
agattctattttaattatgaatatgtttgtatgtggctagtctatgtgca
ggtgcctgaagaagcgtcgacccctggaacggggttataggcagtgggaa
gtgagtggtaaaactaactgcctcacttatgggagcatttctgaatcagc
agaatcagcagagccatctagggcctcactgttttgggtttttagccatg
tcgctccccggggagaccctgttaccctctcattctccccagatgctgtc
accacaggatttacaggatttcatcaggctctgcccaggaagtctctatt
cccagtttccaaatgagctgcctgtgtggggcagtgggctgcacacaaac
accctggtctccagttgagctgaggtcttgaacccgggtgggatccggtg
ggtggtgatttccacctacatgggcgtttgatcttgtctccaggatccct
ggctcctgtcaaagttaccgcccccacagtcccaccccacccccaggaga
ggtgtgtggctatcagtcatgtagctaacagcaccaagccttctcacatg
caaataatgttccccccaaactctcagttcaagccagtgatagatacctg
ctgtcgaaccctgaatcacccctaaaactgtatataaatcttatccaggg
aattaaaggtgtgcgagaactactccttcatctgagtcttttgttccagg
agctgtaacacatgggaaagagagatcttctctcccagagagccacctga
gtcctcacctctcatgggccagcctcaccggactcagtcagagcagctca
gagttaccatgagacctggagcgcggcagagaacttcgtcttctggtcct
gcactttgctttcttctcttggaacccttcgcatcagcttgacagaggat
atccatggaaaacttctctggataccaaggctcatcagatgtcctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_5471549_5472698
seq2: B6Ng01-230A22.b_49_1199

seq1  GAATTCTTTGGTTAAAAAAATGGTTTAGAATAAGTTAATTGACAAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGTTAAAAAAATGGTTTAGAATAAGTTAATTGACAAAGGAA  50

seq1  GTTTCAGAGCACACGATTTTATGTATCCATAAAAATATTTGAGAAAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGAGCACACGATTTTATGTATCCATAAAAATATTTGAGAAAACTG  100

seq1  TATTAATATTACATTAAATATTCTTCAAATAGGTCACCAAAGTTTCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATATTACATTAAATATTCTTCAAATAGGTCACCAAAGTTTCTTTT  150

seq1  AAAATATAATTTAAATATTTTCACCAGTTTTTCTAATGAGAGTAAAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAATTTAAATATTTTCACCAGTTTTTCTAATGAGAGTAAAATGA  200

seq1  GACATGAAAACAAAATTTCTCTTAGAATTTGGCCAGGCATGGTGGCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAAAACAAAATTTCTCTTAGAATTTGGCCAGGCATGGTGGCTCAC  250

seq1  ACCTTTGATCCTGGCTCTTGGGAAGCCGAGGCAGGAAGATCTCCGTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGATCCTGGCTCTTGGGAAGCCGAGGCAGGAAGATCTCCGTGAGT  300

seq1  TTGAGGCCAGTCTGTAACCAGTGAGACCCAGTTTTAACAAGCAAACAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCAGTCTGTAACCAGTGAGACCCAGTTTTAACAAGCAAACAAAT  350

seq1  GAAACTGTCTAGAATCAGACTTGACCCGAAAACTCAAACAAAAGTGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGTCTAGAATCAGACTTGACCCGAAAACTCAAACAAAAGTGCTTT  400

seq1  ATGGTAAATGAAAAATCATACTGCTAGTGACACTTTAAAATGACTTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAATGAAAAATCATACTGCTAGTGACACTTTAAAATGACTTCTCC  450

seq1  CTGAGGTGAGGCTGGGTCACAAAAAATGGTGAGAAGAAAATTATCTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTGAGGCTGGGTCACAAAAAATGGTGAGAAGAAAATTATCTTAAA  500

seq1  AGTGCAGGATGAGTCGGAATGTACGGTCCTCATTGGCAAAGATAAGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGGATGAGTCGGAATGTACGGTCCTCATTGGCAAAGATAAGGAAA  550

seq1  GTCGTGTGGTTTAATTCTGCCCTGTTTGTATGTTTGGAAAACTGTGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGTGGTTTAATTCTGCCCTGTTTGTATGTTTGGAAAACTGTGTCTT  600

seq1  CATTTTTACCTGAGAAGGGAATGGTTGAGCTTCAAGCATGTTCAGTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTACCTGAGAAGGGAATGGTTGAGCTTCAAGCATGTTCAGTGTTT  650

seq1  GGACTCAGAGTCAAATGCCAGGAGCTGGGATAGTGGCAGTTATGGGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAGAGTCAAATGCCAGGAGCTGGGATAGTGGCAGTTATGGGTGAA  700

seq1  ACCAGGGGAAGACCAGTTAATTTGGGGGTATATATTCCCAATTTCTGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGGAAGACCAGTTAATTTGGGGGTATATATTCCCAATTTCTGTCA  750

seq1  GTAAGTACCATTTAGATAAGATTTTAAACTCTGCTCTCAAGTCTCTATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTACCATTTAGATAAGATTTTAAACTCTGCTCTCAAGTCTCTATGT  800

seq1  CTTGCTGGCAGATGAACAATACATTGTATTTTTTGTTTTGGGTTTTGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGGCAGATGAACAATACATTGTATTTTTTGTTTTGGGTTTTGCTT  850

seq1  TGTTTTGTTTTGTTTTGTTTGTTTTTAGCATACGAGAT-GGCACTTGCTA  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTTTTGTTTTGTTTTGTTTGTTTTTAGCATACGAGATGGGCACTTGCTA  900

seq1  GGCAAAGGGCCCAGGTTCAGGTCTCCCTACTCACATAATCCCTCAAAACC  949
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  GGCAAAGGGCCCAGGTTCAGGTCTCCCTACTCACATATTCCCTC-AAACC  949

seq1  ATTGGTAACTGCAGTTTCTCAG-AGGATTGGTCTCCTTCTTCTGACTTCC  998
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  ATTGGTAACTGCAGTTTCTCAGAAGGATTGGTCT-CTTCTTCTGACTTCC  998

seq1  ACAGGCACTGCA-TGCAGGAGGCAC-ACACATATAGACCAAACACCCATG  1046
      |||||||||||| |||||||||||| ||||||||||||| ||||||||||
seq2  ACAGGCACTGCATTGCAGGAGGCACAACACATATAGACC-AACACCCATG  1047

seq1  -CACATAAAACAAAAAAGAAATATA-TCTTCTTTAAAAAATATTTAAAAT  1094
       ||||||||   |||||| |||||| |||||||| ||||||| |||||||
seq2  CCACATAAA--CAAAAAGGAATATATTCTTCTTT-AAAAATA-TTAAAAT  1093

seq1  ATCTCATGGGACTTCT--GAGTTGGCAAAACATGATTTTCAAGAAAGGAA  1142
      ||||||||||||||||  |||||||| |||||||  || || ||| | ||
seq2  ATCTCATGGGACTTCTTGGAGTTGGCCAAACATGGATTCCAGGAAGGAAA  1143

seq1  AACATTTG  1150
      | ||||||
seq2  ACCATTTG  1151