BAC Information

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BAC

Clone NameB6Ng01-230G17
Chromosome11 (Build37)
Map Location 32,639,678 - 32,640,412
singlet/doubletsinglet
Overlap geneFbxw11
Upstream geneCpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10
Downstream geneLOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258, Anp32c, LOC669306, LOC666269, Gabrp, D130052B06Rik, Kcnip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230G17.bB6Ng01-230G17.g
ACCGA043288GA043289
length1,225739
definitionB6Ng01-230G17.b B6Ng01-230G17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtaattaagaaaattgccatgaattctctggctggccccagta
ccatcccatgtttccttatgaaaggatggcaagaagatttcacacaagca
agaaacaaggggacaggcacacagaggcagaagccagagtgacatggccg
gaagtcaagacaaaggcatcttccagaagaagcccaaagaggcaaggaaa
gggtcctccccaagaaccatgagagggaatacagtcaagctgacgccttc
atacttcccctggctagtcaacccaaaacaagctagagtcatttaggaag
agagaacctcaactgaggaaatgcctccccaagatttgcatctaggcaag
tctgtagtgcattttctcaattagggattgactcgggaggacccaggcca
ttgtaggtgatgaccctcctggactggtggtcttgggtgctgtaagaaag
caggctgagcaagctacaaggggaggccagtaagcagagatcttccgcgg
cctctggttccgtttctacctccaggtacctgcctgaggtcctgccctga
ctttcctcagtgatggactatgatgatgtggaaccctttcctcccaactt
gcttatgaccacggtgctcatcccagcaatggaatccctagcaaaggcag
cacttcaatcatgacccgagacctatggtctccagagctgggagaaactt
attctctgttgttttggctcctctgggtgtgagaattggaacacaaccca
tagaatataggaacatgagagtttaaaattccccctgggtgatggaatct
actcacccagagcggaagctggcctggtacagagttctgggtccagacaa
tacccaacatagccctccacaggaagctgccactcctccttgggtgctca
atcttccatcaggcctgaaactctttgggcatcccttatgaccctttctg
atttcgtgtaacaaagaggtggctatggcttgacatcctgagtaactcca
tgaggcaggcctgtcatgaagaatttgggacaagtcacattacgggccca
gcacagtgcctgttcacagcagaacagtgttaccccatgtcatctatgca
tcataaatccatgcttcaaacattctgaatgacacaggcttgtcctcacc
acttagtcttcttctagaacattgccagctcctagtctagtccaggacat
aaggtcctaatctataaggtgccgt
gaattccattcttttataaataaaccaggaaacactcccttcccccatga
actcagtaataaaattcctcttttctccttttgttctcaatgactaatgg
aagctgtaagtcccagtctgccttatatatgtttggtcagtggggcatta
gtgtgctagccatttcttcatttggagaaaggcatcttagccatctcatt
agtcccccaaatattgaattttgtaacataggtattaagttaggaagtga
attaagtactcctgagtcttctgcctgtccacctccttagcagtaatatc
cctttaagggttcagagattctgagaggggttaggttctttttctaaaat
caaacactcaaagtctaagttcaaaaacttagaaacaccagcctgtcgcc
tgttgggtttggttgtagacctttcaagtgaactgttttgtcatgggtat
gttcacagtgtagaaaatgttaactcttttattaattccagtctcatttt
tccttgtaggaagattaaagtctgggacttgcaggctgctcttgaccctc
gggccccagcaagcacattgtgtctgcgcaccttggtggtatgtgatttg
ttggggtggggaaagcgtgtgtctttgtaccacactttgagagacgtata
ggtatttttggccagtcagaacatagttcattttacactgctgcagggtc
ctgtgtaaggtgagcagggaccctcatgaattgtgctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_32639678_32640412
seq2: B6Ng01-230G17.g_69_807

seq1  GAATTCCATTCTTTTATAAATAAACCAGGAAACACTCCCTTCCCCCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCTTTTATAAATAAACCAGGAAACACTCCCTTCCCCCATGA  50

seq1  ACTCAGTAATAAAATTCCTCTTTTCTCCTTTTGTTCTCAATGACTAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTAATAAAATTCCTCTTTTCTCCTTTTGTTCTCAATGACTAATGG  100

seq1  AAGCTGTAAGTCCCAGTCTGCCTTATATATGTTTGGTCAGTGGGGCATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTAAGTCCCAGTCTGCCTTATATATGTTTGGTCAGTGGGGCATTA  150

seq1  GTGTGCTAGCCATTTCTTCATTTGGAGAAAGGCATCTTAGCCATCTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTAGCCATTTCTTCATTTGGAGAAAGGCATCTTAGCCATCTCATT  200

seq1  AGTCCCCCAAATATTGAATTTTGTAACATAGGTATTAAGTTAGGAAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCCAAATATTGAATTTTGTAACATAGGTATTAAGTTAGGAAGTGA  250

seq1  ATTAAGTACTCCTGAGTCTTCTGCCTGTCCACCTCCTTAGCAGTAATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTACTCCTGAGTCTTCTGCCTGTCCACCTCCTTAGCAGTAATATC  300

seq1  CCTTTAAGGGTTCAGAGATTCTGAGAGGGGTTAGGTTCTTTTTCTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAGGGTTCAGAGATTCTGAGAGGGGTTAGGTTCTTTTTCTAAAAT  350

seq1  CAAACACTCAAAGTCTAAGTTCAAAAACTTAGAAACACCAGCCTGTCGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTCAAAGTCTAAGTTCAAAAACTTAGAAACACCAGCCTGTCGCC  400

seq1  TGTTGGGTTTGGTTGTAGACCTTTCAAGTGAACTGTTTTGTCATGGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGTTTGGTTGTAGACCTTTCAAGTGAACTGTTTTGTCATGGGTAT  450

seq1  GTTCACAGTGTAGAAAATGTTAACTCTTTTATTAATTCCAGTCTCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAGTGTAGAAAATGTTAACTCTTTTATTAATTCCAGTCTCATTTT  500

seq1  TCCTTGTAGGAAGATTAAAGTCTGGGACTTGCAGGCTGCTCTTGACCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTAGGAAGATTAAAGTCTGGGACTTGCAGGCTGCTCTTGACCCTC  550

seq1  GGGCCCCAGCAAGCACATTGTGTCTGCGCACCTTGGTGGTATGTGATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCCAGCAAGCACATTGTGTCTGCGCACCTTGGTGGTATGTGATTTG  600

seq1  TTGGGGTGGGGAAAGCGTGTGTC-TTGTACCACACTTTGAGAGACGTATA  649
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGGGGTGGGGAAAGCGTGTGTCTTTGTACCACACTTTGAGAGACGTATA  650

seq1  GGTATTTTTGGCCAGCCAGAACATAGTTCA-TTTACACTGCTGCAGGGTC  698
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  GGTATTTTTGGCCAGTCAGAACATAGTTCATTTTACACTGCTGCAGGGTC  700

seq1  CTGTGT-AGGTGAGCAGGCACCCTCATG-ATTGTGCTCA  735
      |||||| ||||||||||| ||||||||| ||||||||||
seq2  CTGTGTAAGGTGAGCAGGGACCCTCATGAATTGTGCTCA  739