BAC Information

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BAC

Clone NameB6Ng01-231D10
Chromosome11 (Build37)
Map Location 37,789,519 - 37,964,026
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039148
Downstream geneLOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231D10.bB6Ng01-231D10.g
ACCGA043873GA043874
length1,1961,099
definitionB6Ng01-231D10.b B6Ng01-231D10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,789,519 - 37,790,733)(37,962,915 - 37,964,026)
sequence
gaattctctggatactgaaaacagaaactgtatacctatatagtaatagc
tgttctttgtagcccaaagacaaagacacaatcgctcagtctgtaatatt
tggacacttcagggctcctcctaagagtagatccagacactttgtacact
tatcttcaatgctttctaatacatcaaatgtcagaatctttcttctaaga
atgagcagcatccaggtgtatatacacattttcttcactcatctgtttgt
agacacatgttgatttcatttttcttttatggtaactgtgaacatgggcc
tacagatatctgacagtctgctttcagctcttcttgacatatacacagat
aggtgatgtcactagaacacatggatattctcattttaatatttgtaagg
gagtaatggcatttccatagactataccacaaggctaacagggcgtgaag
gtggcaaagttctcaatactccacaaaagttgtacttttctgtctttttt
aaatagttggaaccttcacggggatgaagtgatatttctctgcacttgtc
tctggcatctcactaaagatgaacaatgtgtaatctctttctctccactt
tgtagctatttgggtatttctttggggggcaggggtggctatttgaatcc
ttcgatgattttaattcagttgactttgctgcagtccttgcaaaaaccac
cagacttcatccaactgtctcaccattgacccctcaactgatagatgtaa
gcattcctccaattgtgtagaatgccatttgactctgatagtatcttttg
atgaacacattaaagtgtttttcaaaagaattctagttatttattattta
accatctctggagcgtgtcatatattttaaaaaaaacaatgaaaattcga
atatatgaagattttactctgtatgcttttaagatttatggtttgaagtt
ttatatttggctagagatcccttttttacttaaaatttgagcccactgtg
gggggaaatatagcatcattcttttgaatgctatatctagtttgccagta
tcattgtagatgatcccttggaatgaatgttattcctcatgtcattttta
gaacttatgagatactatacttgtcagtagattcatattacattgtcaat
atagcctagcattgcattcgatctttcctaaaatatatccataaga

gaattctcatgggtataaaggcaagagatagaataataagaatatgatgt
gatatgctatcttttaaatctatgaatcaatatatattcatgaaatgaaa
actagggactgtcatcagcctttattagatatagatggggttgtgtatat
aaatccagacacaatagagttattggctccaaacaattggaaactaatag
gagaaaaaacaatatggtaacagaaaggcttcttattagaaactatacga
taacagctgagcaatcttataagaaacagtccatcggaaattaatctatc
ttcagtaagattagcaacaattctttgtgccctatattcttggtctcaaa
gtaatgaaaaaaaaaaaaacaacttcatatgtattttatatttagcactg
attataaggacccctggtttttttctttggcagtcactcattatttcatt
tgtctttcttggatagaaagacagtattagtgtagttatattgtgtcttt
gtttggtttctatcactatggtaaaacaccatgaccaaaggcaaattaag
gatcgagcagtttattggacctaatcacactcagtcatgaagaactggaa
ttgattgaaatacatggatagcagaaatataaaggcaggtaatagaagaa
ggctctcctctggcttgttctccatagcttgcttagcttgtcttcttata
caatggaggaccatctgtctaatggatggttcagcccacaatgggctggg
cccttcctacgtgaattacaaatcgagaaaatgctcagatatgtatacag
agcaattggttaaaggcattttctcagttgatgttttctcttctaatttg
aatatagcagcatcatgctgacaaaacactaaaagcatagcaggaacaat
agtaaataatttttccccattgttgaatgctgacattccagattaagcta
cctccaaactactccctaactcagactttcttttctggccatctttatac
tgtgtgagcacatgatctccctttgtgtgtgtagaaagaaaggtgttgat
aaatctttgttgatttcttctttctagacacatcttttttttaaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_37789519_37790733
seq2: B6Ng01-231D10.b_49_1244

seq1  GAATTCTCTGGATACTGAAAACAGAAACTGTATACCTATATAGTAATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGATACTGAAAACAGAAACTGTATACCTATATAGTAATAGC  50

seq1  TGTTCTTTGTAGCCCAAAGACAAAGACACAATCGCTCAGTCTGTAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTGTAGCCCAAAGACAAAGACACAATCGCTCAGTCTGTAATATT  100

seq1  TGGACACTTCAGGGCTCCTCCTAAGAGTAGATCCAGACACTTTGTACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACTTCAGGGCTCCTCCTAAGAGTAGATCCAGACACTTTGTACACT  150

seq1  TATCTTCAATGCTTTCTAATACATCAAATGTCAGAATCTTTCTTCTAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCAATGCTTTCTAATACATCAAATGTCAGAATCTTTCTTCTAAGA  200

seq1  ATGAGCAGCATCCAGGTGTATATACACATTTTCTTCACTCATCTGTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAGCATCCAGGTGTATATACACATTTTCTTCACTCATCTGTTTGT  250

seq1  AGACACATGTTGATTTCATTTTTCTTTTATGGTAACTGTGAACATGGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATGTTGATTTCATTTTTCTTTTATGGTAACTGTGAACATGGGCC  300

seq1  TACAGATATCTGACAGTCTGCTTTCAGCTCTTCTTGACATATACACAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATATCTGACAGTCTGCTTTCAGCTCTTCTTGACATATACACAGAT  350

seq1  AGGTGATGTCACTAGAACACATGGATATTCTCATTTTAATATTTGTAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATGTCACTAGAACACATGGATATTCTCATTTTAATATTTGTAAGG  400

seq1  GAGTAATGGCATTTCCATAGACTATACCACAAGGCTAACAGGGCGTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATGGCATTTCCATAGACTATACCACAAGGCTAACAGGGCGTGAAG  450

seq1  GTGGCAAAGTTCTCAATACTCCACAAAAGTTGTACTTTTCTGTCTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAAGTTCTCAATACTCCACAAAAGTTGTACTTTTCTGTCTTTTTT  500

seq1  AAATAGTTGGAACCTTCACGGGGATGAAGTGATATTTCTCTGCACTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTGGAACCTTCACGGGGATGAAGTGATATTTCTCTGCACTTGTC  550

seq1  TCTGGCATCTCACTAAAGATGAACAATGTGTAATCTCTTTCTCTCCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCATCTCACTAAAGATGAACAATGTGTAATCTCTTTCTCTCCACTT  600

seq1  TGTAGCTATTTGGGTATTTCTTTGGGGGGCAGGGGTGGCTATTTGAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTATTTGGGTATTTCTTTGGGGGGCAGGGGTGGCTATTTGAATCC  650

seq1  TTCGATGATTTTAATTCAGTTGACTTTGCTGCAGTCCTTGCAAAAACCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATGATTTTAATTCAGTTGACTTTGCTGCAGTCCTTGCAAAAACCAC  700

seq1  CAGACTTCATCCAACTGTCTCACCATTGACCCCTCAACTGATAGATGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTCATCCAACTGTCTCACCATTGACCCCTCAACTGATAGATGTAA  750

seq1  GCATTCCTCCAATTGTGTAGAATGCCATTTGACTCTGATAGTATCTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCTCCAATTGTGTAGAATGCCATTTGACTCTGATAGTATCTTTTG  800

seq1  ATGAACACATTAAAGTGTTTTTCAAAAGAATTCTAGTTATTTATTATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACACATTAAAGTGTTTTTCAAAAGAATTCTAGTTATTTATTATTTA  850

seq1  ACCATCTCTGGAGCGTGTCATATATTTTAAAAAAAACAATGAAAATTCGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCTGGAGCGTGTCATATATTTTAAAAAAAACAATGAAAATTCGA  900

seq1  ATATATGAAGATTTTACTCTGTATGCTTTTAAGATTTATGGTTTGAAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGAAGATTTTACTCTGTATGCTTTTAAGATTTATGGTTTGAAGTT  950

seq1  TTATATTTGGCTAGAGATCCCTTTTTTACTTAAAATTTGAGCCCACTGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTATATTTGGCTAGAGATCCCTTTTTTACTTAAAATTTGAGCCCACTGTG  1000

seq1  GGGGGAAATATAGCATCATTCTTTTGAATGCTAATATCTAGTTTTGCCAG  1050
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  GGGGGAAATATAGCATCATTCTTTTGAATGCT-ATATCTAG-TTTGCCAG  1048

seq1  TATCATTTGTAGAATGATCCCTTGGAATGAATGTTA-TCCTCATGTCAAT  1099
      ||||| |||||| ||||||||||||||||||||||| |||||||||||  
seq2  TATCA-TTGTAG-ATGATCCCTTGGAATGAATGTTATTCCTCATGTCA--  1094

seq1  TTTTTAG-ACTTATAAAAGATAAATATAACTTGTCAAGGTAGATTCAATA  1148
      ||||||| ||||||   |||| | ||| ||||||||  |||||||| |||
seq2  TTTTTAGAACTTAT--GAGAT-ACTAT-ACTTGTCA--GTAGATTC-ATA  1137

seq1  ATTTACATTGGTCAATTATTAAGGCTCTAGCATATGCATTCTAATCTTTT  1198
        ||||||| |||||    ||  || ||||||| |||||||  |||||| 
seq2  --TTACATT-GTCAA----TATAGC-CTAGCAT-TGCATTC-GATCTTTC  1177

seq1  CATTAATATATC--TAAGA  1215
      |   ||||||||  |||||
seq2  CTAAAATATATCCATAAGA  1196


seq1: chr11_37962915_37964026
seq2: B6Ng01-231D10.g_64_1162 (reverse)

seq1  AAAATTAAAAAAAAAAAGAAATGGTGTTCCTAGAAAAGAAGAAATCAAAA  50
      |||||| ||||||||       | |||  |||| ||||||||||||||  
seq2  AAAATTTAAAAAAAA-------GATGTGTCTAG-AAAGAAGAAATCAA--  40

seq1  CCAAAGATTTATCCACCAACCTTTCTTTCCTACACACACAAAGGGAAGAT  100
       |||||||||||| ||  |||||||||| |||||||||||||||| ||||
seq2  -CAAAGATTTATCAAC--ACCTTTCTTT-CTACACACACAAAGGG-AGAT  85

seq1  CATGTGCTCACACAGTATAAAGATGGCCAG-AAAGAAAGTCTGAGTTAGG  149
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATGTGCTCACACAGTATAAAGATGGCCAGAAAAGAAAGTCTGAGTTAGG  135

seq1  GAGTAGTTTGGAGGTAGCTTAATCTGGAATGTCAGCATTCAACAATGGGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTTTGGAGGTAGCTTAATCTGGAATGTCAGCATTCAACAATGGGG  185

seq1  AAAAATTATTTACTATTGTTCCTGCTATGCTTTTAGTGTTTTGTCAGCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATTTACTATTGTTCCTGCTATGCTTTTAGTGTTTTGTCAGCAT  235

seq1  GATGCTGCTATATTCAAATTAGAAGAGAAAACATCAACTGAGAAAATGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGCTATATTCAAATTAGAAGAGAAAACATCAACTGAGAAAATGCC  285

seq1  TTTAACCAATTGCTCTGTATACATATCTGAGCATTTTCTCGATTTGTAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCAATTGCTCTGTATACATATCTGAGCATTTTCTCGATTTGTAAT  335

seq1  TCACGTAGGAA-GGCCCAGCCCATTGTGGGCTGAACCATCCATTAGACAG  398
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCACGTAGGAAGGGCCCAGCCCATTGTGGGCTGAACCATCCATTAGACAG  385

seq1  ATGGTCCTCCATTGTATAAGAAGACAAGCTAAGCAAGCTATGGAGAACAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCTCCATTGTATAAGAAGACAAGCTAAGCAAGCTATGGAGAACAA  435

seq1  GCCAGAGGAGAGCCTTCTTCTATTACCTGCCTTTATATTTCTGCTATCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGGAGAGCCTTCTTCTATTACCTGCCTTTATATTTCTGCTATCCA  485

seq1  TGTATTTCAATCAATTCCAGTTCTTCATGACTGAGTGTGATTAGGTCCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCAATCAATTCCAGTTCTTCATGACTGAGTGTGATTAGGTCCAA  535

seq1  TAAACTGCTCGATCCTTAATTTGCCTTTGGTCATGGTGTTTTACCATAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGCTCGATCCTTAATTTGCCTTTGGTCATGGTGTTTTACCATAGT  585

seq1  GATAGAAACCAAACAAAGACACAATATAACTACACTAATACTGTCTTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAACCAAACAAAGACACAATATAACTACACTAATACTGTCTTTCT  635

seq1  ATCCAAGAAAGACAAATGAAATAATGAGTGACTGCCAAAGAAAAAAACCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGAAAGACAAATGAAATAATGAGTGACTGCCAAAGAAAAAAACCA  685

seq1  GGGGTCCTTATAATCAGTGCTAAATATAAAATACATATGAAGTTGTTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCCTTATAATCAGTGCTAAATATAAAATACATATGAAGTTGTTTTT  735

seq1  TTTTTTTTCATTACTTTGAGACCAAGAATATAGGGCACAAAGAATTGTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCATTACTTTGAGACCAAGAATATAGGGCACAAAGAATTGTTG  785

seq1  CTAATCTTACTGAAGATAGATTAATTTCCGATGGACTGTTTCTTATAAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTTACTGAAGATAGATTAATTTCCGATGGACTGTTTCTTATAAGA  835

seq1  TTGCTCAGCTGTTATCGTATAGTTTCTAATAAGAAGCCTTTCTGTTACCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGCTGTTATCGTATAGTTTCTAATAAGAAGCCTTTCTGTTACCA  885

seq1  TATTGTTTTTTCTCCTATTAGTTTCCAATTGTTTGGAGCCAATAACTCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTTTTCTCCTATTAGTTTCCAATTGTTTGGAGCCAATAACTCTA  935

seq1  TTGTGTCTGGATTTATATACACAACCCCATCTATATCTAATAAAGGCTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTGGATTTATATACACAACCCCATCTATATCTAATAAAGGCTGA  985

seq1  TGACAGTCCCTAGTTTTCATTTCATGAATATATATTGATTCATAGATTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTCCCTAGTTTTCATTTCATGAATATATATTGATTCATAGATTTA  1035

seq1  AAAGATAGCATATCACATCATATTCTTATTATTCTATCTCTTGCCTTTAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAGCATATCACATCATATTCTTATTATTCTATCTCTTGCCTTTAT  1085

seq1  ACCCATGAGAATTC  1112
      ||||||||||||||
seq2  ACCCATGAGAATTC  1099


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