BAC Information

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BAC

Clone NameB6Ng01-231H14
Chromosome11 (Build37)
Map Location 97,625,606 - 97,736,877
singlet/doubletdoublet
Overlap geneCcdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47
Upstream geneSnx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik
Downstream genePlxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231H14.bB6Ng01-231H14.g
ACCGA044067GA044068
length1,1211,150
definitionB6Ng01-231H14.b B6Ng01-231H14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,735,761 - 97,736,877)(97,625,606 - 97,626,743)
sequence
gaattcagagattcacctcccactgcttcccaggtcctgagattaaagtt
gtgcaccactaacacctgacttatatatattttttaagtctgaatacagt
gttattggtttcagtatttataagtaatttggtaaatcctataattgaat
ctggtaagtatttgattattgtcttttgggtttgcactaaaggatttttt
ttttttttacccactgagatggctcagtgggtaagagcacccgactgttc
ttccaaaggtccaaagttcaaatcccagcaaccacatggtggctcacaac
catccataatgagatctgactccctcttctggagtgtctgaagacagcta
cagtgtacttacatataataaaaataaataaatcttttaaaaattaaaaa
aaaaagaaaacaacaacaaaaatgataattatatgaataattcaatttaa
aaactagatcttaacaccaaatcttcaaaataggtttgattatatattag
ctttcattttctaatcagtgttttgtagacacctgttttatggttggttc
ttttggtgaacatttgacatactcagtgttttcccatgctttcattccca
tctgatctgttcctgtttttagatattaaaataacatttttcaaaatctt
aactttgaacattataaattttaatttgcattttctgctgagtagagcag
cagatggccaatgtagaaagaatactgcatctgacattattttacttcaa
gaacttaaaagaagctgggctcttttaacaaaaagagtacctgtgtttag
aaaaaacagtcagccaaatgcaagggttttatggtaaacagaaactctta
aaaataagagattttgcagtagaaaagacaaaccagtatgcagttgtatt
cttgcagtcccagctatgatataacatgagacacgatgcccaagaacatg
gaagaaaaagaactcagactaaagcccaaacactgagataactcctatta
agcaaaaaataaggagggttcatatttaaaatcaattcttgggtcatgtg
gtaccaaacatagcaattctaaaaataaaccttggttccttatagattct
cagattatataatcattttat
gaattcactaggacagggtgctcactcttctgcaaacagctctctttgta
ttgagtccccttatgtgctgtgctcaaacctgcatccttaccacaaatct
agccctctccctcccaggaatctctccttgtttcttccccttcaccctca
atgagggtctctcctctctcctcactctgctttgcttcaagctgtaatcc
tagaagtttccccgaggaggcagcctctaaggatagctggaataaagctg
gcgacgtgggaagcaccataagctgaaacggcgctcacagccacagcgtg
gctggaggtggagggcaagctgatggagaagggggtgtcagagaaagcca
gctgagaagggagctgatcaaaccctttacaggcatgcgaagggcctgca
ctccaccctgttggtggcagaaaccaagaactggcacagtgtaggcgaga
ggtaccactggctatcacgtgaagaatggattggaaaggtataaattaat
tatttattaccaacctcccggcaaccagagaggtgcaaaatgggagacca
gctaagaagactaaatacacaaagtgccttgcagatgcaaagcacacagt
cagcaaaaacacagatgtgtgtgtaatgtgtgtgcatgtacgtatacacg
caaccagggccttgctacttagcccagactgccttcaaactgaccaggac
tgccttcaccacctccaccaccacaaacacactcgcccttactttgtcct
acatagattttcctttccatcccaaggcaccaatggcaaccagggtctgg
agaaatttgcagatgtcaccattgcatgagagtgctagggcaccctgtgg
ctagacgctgctgaatatacaagttacaggacaactccaccacacaggca
acagaatcacccagattacaggtctcctggcaaggatggcaagtctgggt
tgtcagcttcagttgaggcactgcctccatcagattgtgggaatgtcctg
tggagtgtgtgttctgagtatgaccttgagaagaagggaaggcccagccc
aactggtggggtgtgcagccatccttaaggttaggtggtctacctgtgta
aacaagggaaagctgagtagcagagagagccaagccagttaagcagcatc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_97735761_97736877
seq2: B6Ng01-231H14.b_50_1170 (reverse)

seq1  ATAAAATGATTATATAATCCTGAAGAATCTAT-AGGAACCAA-GTTTATT  48
      |||||||||||||||||| ||| ||||||||| ||||||||| |||||||
seq2  ATAAAATGATTATATAAT-CTG-AGAATCTATAAGGAACCAAGGTTTATT  48

seq1  TTTAGAATTTGCTATGTTTGGGTACCACATGACC--AGAATTGGATTTTT  96
      ||||||| ||||||||||| ||||||||||||||  |||||||   ||||
seq2  TTTAGAA-TTGCTATGTTT-GGTACCACATGACCCAAGAATTG--ATTTT  94

seq1  AAATATGAACCCTCCTTA-TTTTTGCTTATAGGGAGTTATTCTCAGTGTT  145
      |||||||||||||||||| ||||||||||   ||||||| ||||||||||
seq2  AAATATGAACCCTCCTTATTTTTTGCTTAATAGGAGTTA-TCTCAGTGTT  143

seq1  T-GGCTTTAGTCTGAGTTCTTTTTCTTCCATG-TCTT-GGCATCGTGTCT  192
      | |||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  TGGGCTTTAGTCTGAGTTCTTTTTCTTCCATGTTCTTGGGCATCGTGTCT  193

seq1  CATGTTATATCATAGCTGGGACTGCAAG-ATACAACTGCATACTGG-TTG  240
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  CATGTTATATCATAGCTGGGACTGCAAGAATACAACTGCATACTGGTTTG  243

seq1  TCTTTTCTACTGC-AAATCTCTTATTTTTAAGAGTTTCTGTTTACCATAA  289
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTACTGCAAAATCTCTTATTTTTAAGAGTTTCTGTTTACCATAA  293

seq1  AACCCTTGCATTTGGCTGACTGTTTTTTCTAAACACAGGTACTCTTTTTG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTGCATTTGGCTGACTGTTTTTTCTAAACACAGGTACTCTTTTTG  343

seq1  TTAAAAGAGCCCAGCTTCTTTTAAGTTCTTGAAGTAAAATAATGTCAGAT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAGCCCAGCTTCTTTTAAGTTCTTGAAGTAAAATAATGTCAGAT  393

seq1  GCAGTATTCTTTCTACATTGGCCATCTGCTGCTCTACTCAGCAGAAAATG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATTCTTTCTACATTGGCCATCTGCTGCTCTACTCAGCAGAAAATG  443

seq1  CAAATTAAAATTTATAATGTTCAAAGTTAAGATTTTGAAAAATGTTATTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAAAATTTATAATGTTCAAAGTTAAGATTTTGAAAAATGTTATTT  493

seq1  TAATATCTAAAAACAGGAACAGATCAGATGGGAATGAAAGCATGGGAAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCTAAAAACAGGAACAGATCAGATGGGAATGAAAGCATGGGAAAA  543

seq1  CACTGAGTATGTCAAATGTTCACCAAAAGAACCAACCATAAAACAGGTGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGTATGTCAAATGTTCACCAAAAGAACCAACCATAAAACAGGTGT  593

seq1  CTACAAAACACTGATTAGAAAATGAAAGCTAATATATAATCAAACCTATT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAACACTGATTAGAAAATGAAAGCTAATATATAATCAAACCTATT  643

seq1  TTGAAGATTTGGTGTTAAGATCTAGTTTTTAAATTGAATTATTCATATAA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATTTGGTGTTAAGATCTAGTTTTTAAATTGAATTATTCATATAA  693

seq1  TTATCATTTTTGTTGTTGTTTTCTTTTTTTTTTAATTTTTAAAAGATTTA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATTTTTGTTGTTGTTTTCTTTTTTTTTTAATTTTTAAAAGATTTA  743

seq1  TTTATTTTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAG  793

seq1  AAGAGGGAGTCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGAGTCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTG  843

seq1  CTGGGATTTGAACTTTGGACCTTTGGAAGAACAGTCGGGTGCTCTTACCC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTTGAACTTTGGACCTTTGGAAGAACAGTCGGGTGCTCTTACCC  893

seq1  ACTGAGCCATCTCAGTGGGTAAAAAAAAAAAAAATCCTTTAGTGCAAACC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCATCTCAGTGGGTAAAAAAAAAAAAAATCCTTTAGTGCAAACC  943

seq1  CAAAAGACAATAATCAAATACTTACCAGATTCAATTATAGGATTTACCAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGACAATAATCAAATACTTACCAGATTCAATTATAGGATTTACCAA  993

seq1  ATTACTTATAAATACTGAAACCAATAACACTGTATTCAGACTTAAAAAAT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTATAAATACTGAAACCAATAACACTGTATTCAGACTTAAAAAAT  1043

seq1  ATATATAAGTCAGGTGTTAGTGGTGCACAACTTTAATCTCAGGACCTGGG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAGTCAGGTGTTAGTGGTGCACAACTTTAATCTCAGGACCTGGG  1093

seq1  AAGCAGTGGGAGGTGAATCTCTGAATTC  1117
      ||||||||||||||||||||||||||||
seq2  AAGCAGTGGGAGGTGAATCTCTGAATTC  1121

seq1: chr11_97625606_97626743
seq2: B6Ng01-231H14.g_66_1215

seq1  GAATTCACTAGGACAGGGTGCTCACTCTTCTGCAAACAGCTCTCTTTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGGACAGGGTGCTCACTCTTCTGCAAACAGCTCTCTTTGTA  50

seq1  TTGAGTCCCCTTATGTGCTGTGCTCAAACCTGCATCCTTACCACAAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCCCCTTATGTGCTGTGCTCAAACCTGCATCCTTACCACAAATCT  100

seq1  AGCCCTCTCCCTCCCAGGAATCTCTCCTTGTTTCTTCCCCTTCACCCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCTCCCTCCCAGGAATCTCTCCTTGTTTCTTCCCCTTCACCCTCA  150

seq1  ATGAGGGTCTCTCCTCTCTCCTCACTCTGCTTTGCTTCAAGCTGTAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGTCTCTCCTCTCTCCTCACTCTGCTTTGCTTCAAGCTGTAATCC  200

seq1  TAGAAGTTTCCCCGAGGAGGCAGCCTCTAAGGATAGCTGGAATAAAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTTTCCCCGAGGAGGCAGCCTCTAAGGATAGCTGGAATAAAGCTG  250

seq1  GCGACGTGGGAAGCACCATAAGCTGAAACGGCGCTCACAGCCACAGCGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACGTGGGAAGCACCATAAGCTGAAACGGCGCTCACAGCCACAGCGTG  300

seq1  GCTGGAGGTGGAGGGCAAGCTGATGGAGAAGGGGGTGTCAGAGAAAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGTGGAGGGCAAGCTGATGGAGAAGGGGGTGTCAGAGAAAGCCA  350

seq1  GCTGAGAAGGGAGCTGATCAAACCCTTTACAGGCATGCGAAGGGCCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAAGGGAGCTGATCAAACCCTTTACAGGCATGCGAAGGGCCTGCA  400

seq1  CTCCACCCTGTTGGTGGCAGAAACCAAGAACTGGCACAGTGTAGGCGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCCTGTTGGTGGCAGAAACCAAGAACTGGCACAGTGTAGGCGAGA  450

seq1  GGTACCACTGGCTATCACGTGAAGAATGGATTGGAAAGGTATAAATTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCACTGGCTATCACGTGAAGAATGGATTGGAAAGGTATAAATTAAT  500

seq1  TATTTATTACCAACCTCCCGGCAACCAGAGAGGTGCAAAATGGGAGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTACCAACCTCCCGGCAACCAGAGAGGTGCAAAATGGGAGACCA  550

seq1  GCTAAGAAGACTAAATACACAAAGTGCCTTGCAGATGCAAAGCACACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAAGACTAAATACACAAAGTGCCTTGCAGATGCAAAGCACACAGT  600

seq1  CAGCAAAAACACAGATGTGTGTGTAATGTGTGTGCATGTACGTATACACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAAACACAGATGTGTGTGTAATGTGTGTGCATGTACGTATACACG  650

seq1  CAACCAGGGCCTTGCTACTTAGCCCAGACTGCCTTCAAACTGACCAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGGGCCTTGCTACTTAGCCCAGACTGCCTTCAAACTGACCAGGAC  700

seq1  TGCCTTCACCACCTCCACCACCACAAACACACTCGCCCTTACTTTGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCACCACCTCCACCACCACAAACACACTCGCCCTTACTTTGTCCT  750

seq1  ACATAGATTTTCCTTTCCATCCCAAGGCACCAATGGCAACCAGGGTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGATTTTCCTTTCCATCCCAAGGCACCAATGGCAACCAGGGTCTGG  800

seq1  AGAAATTTGCAGATGTCACCATTGCATGAGAGTGCTAAGGGCACCCTGTG  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGAAATTTGCAGATGTCACCATTGCATGAGAGTGCT-AGGGCACCCTGTG  849

seq1  GCTAGACGCTGCTGAATATACAAGTTACAGGACAACTCCACCACACAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACGCTGCTGAATATACAAGTTACAGGACAACTCCACCACACAGGC  899

seq1  AACAGAATCACCCAGATTACAGGTCTCCTGGCAAGGATGGCAAGTCTGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATCACCCAGATTACAGGTCTCCTGGCAAGGATGGCAAGTCTGGG  949

seq1  TTGTCAGCTTCAGTTGAGGCACTGCCTCCATCAGATTGTGGGAATGT-CT  999
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGTCAGCTTCAGTTGAGGCACTGCCTCCATCAGATTGTGGGAATGTCCT  999

seq1  GT-GAGTGTGTGTTCTTGAGTATGACC-TGAG-AGA--GGAAGGCCCAGC  1044
      || |||||||||||| ||||||||||| |||| |||  ||||||||||||
seq2  GTGGAGTGTGTGTTC-TGAGTATGACCTTGAGAAGAAGGGAAGGCCCAGC  1048

seq1  CC-ACT-GTGG---GTGGAGCCATCCCTA--GGTAGGTGGTCTACCTGTG  1087
      || ||| ||||   ||| |||||||| ||  | |||||||||||||||||
seq2  CCAACTGGTGGGGTGTGCAGCCATCCTTAAGGTTAGGTGGTCTACCTGTG  1098

seq1  TAAACAAGGG-AAGCTGAGTAAGGCA-AGAGAAGCAAGCCAG-TAAGCAG  1134
      |||||||||| ||||||||||  ||| |||||  |||||||| |||||||
seq2  TAAACAAGGGAAAGCTGAGTA--GCAGAGAGAGCCAAGCCAGTTAAGCAG  1146

seq1  CATC  1138
      ||||
seq2  CATC  1150