BAC Information

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BAC

Clone NameB6Ng01-231N17
Chromosome11 (Build37)
Map Location 104,451,852 - 104,577,503
singlet/doubletdoublet
Overlap geneItgb3, LOC666739, LOC629960
Upstream geneGm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959
Downstream geneLOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, Tanc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231N17.bB6Ng01-231N17.g
ACCGA044341GA044342
length1,0651,098
definitionB6Ng01-231N17.b B6Ng01-231N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,451,852 - 104,452,909)(104,576,398 - 104,577,503)
sequence
gaattcctggcatgacccagtttggctcctaaatcatgttcccactttgt
cttggttccatagcttgtaaggtaaaaaggcagactgcgtcatgtttaaa
acttttttcttatgcttagttaattaattgtgtgtatggtgtgtgtgtct
gtgtttagttgtgagctgtctgatatggatgcaggaaactgaactcaggt
cctgtggaagagcagaggacactcttcactgatgagctttcttgcttgcc
ttctacttcattcattcattcattcattcattgagactagatgtctcact
gaacctggagttcactgatttggtacaaccagctggagagtgagctctag
ggacccacttctctctccctctatagagggattacagacgatgctggcta
gttttacgtcaacttgatacacgctggcatcatcagagagaagggagcct
caactgagaaaatgtctccataagactgagcaagcctataggacatttcc
ttaattagagattgatgggcccagcccattgtgggtggtgctgttctggg
ctgggtcctgggttctataagaaagcagctgaacaagcaaggatgcacaa
acaagccagtaagcagcatccctccatggtttctgcatcagctcctgcct
ccaggtccctgccctctctgagttcctcacttccttcggtgatggactag
gacgtggaagtgtgagccacatagacactttccttcccagcttacggttg
gtcatagtgcttcatcacagccacactactcctcactaggacacagaggt
agctgctggaggtgcttttgtatatggatgctgggatctgaactcagctc
cacagccttatgttggatagaaagaatcttgtgtatatgggctttgaacc
tgaagtggtgagagagacttcacttcgaaataatgcacattagtagattt
cttttcttttctttcttttttttttttttttttcagaacaggttttctct
gtataagcctggcctgtccttgaacttcactttgcagaccaggctggact
ataaactcaggaaat
gaattcagaaattctccatataaaaatcaaaagatcaaaaacataaacta
agatctcgaaccatgaatctacttgaagaaaacacagaaaaatgtttcaa
gccattaataagggcaacaatttttatatgatgccaaaaggaaaaaaaaa
caggtaaatgggattatattaaactaagacacttctagatagcttaggaa
acagtagtttgcagactgaaagaagaatttgagaaacattcatctgaaaa
ataatccatttctaaaatacatatctgtttttataaaaccaagtaataca
attaaatgtttctctattagttaaacacaaagacaacatcggatagggaa
gtgaagagcctagaaaataagcaacagggaagccttgaatgtaaacgtcc
agaagatgcaaagatcaacaaaatccagtagttccccagcatgcaagttg
tcggaactctgtatccgagtactgaaagacaagtttgggcattaagacag
cgctgacagaatatctggtacacccaaacttacaaagataactgttggac
atttgagaacatttgaggtcaaatcagtagtaaagatgcttttaaaaaag
aacaagcagataaataaatgacaattattaattcgaagaatgggattaat
gttatacaatcagaaagaagtgctatgtacctcagctatacgcagtgttc
tcagaggtttattaacatcaggactgaatgtggcgctccttacattggtc
ataagcatcttggaagaatagacttgtgtgtgagaagtgtggatgctgag
gacagaacaggaagctcacactctcaaaaatttgaaaaattcttaaaagt
ttgacagttcctaatacaaataattatcttcgatcaaaaagtgtgtccat
tacaaaagttatcatacttttttcacatagtgtatatattgtcattaatt
ttagtaaaaaaaaatcaacaataattctaagtatggagagcaaggagtca
gctaaaatagtcaatattgctgtccctggaaacctaagtgggggaaattg
aagatagagcttgttttttgtattaggctaaccaaactgcagaccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_104451852_104452909
seq2: B6Ng01-231N17.b_48_1112

seq1  GAATTCCTGGCATGACCCAGTTTGGCTCCTAAATCATGTTCCCACTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGCATGACCCAGTTTGGCTCCTAAATCATGTTCCCACTTTGT  50

seq1  CTTGGTTCCATAGCTTGTAAGGTAAAAAGGCAGACTGCGTCATGTTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTCCATAGCTTGTAAGGTAAAAAGGCAGACTGCGTCATGTTTAAA  100

seq1  ACTTTTTTCTTATGCTTAGTTAATTAATTGTGTGTATGGTGTGTGTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTCTTATGCTTAGTTAATTAATTGTGTGTATGGTGTGTGTGTCT  150

seq1  GTGTTTAGTTGTGAGCTGTCTGATATGGATGCAGGAAACTGAACTCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAGTTGTGAGCTGTCTGATATGGATGCAGGAAACTGAACTCAGGT  200

seq1  CCTGTGGAAGAGCAGAGGACACTCTTCACTGATGAGCTTTCTTGCTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGAAGAGCAGAGGACACTCTTCACTGATGAGCTTTCTTGCTTGCC  250

seq1  TTCTACTTCATTCATTCATTCATTCATTCATTGAGACTAGATGTCTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTCATTCATTCATTCATTCATTCATTGAGACTAGATGTCTCACT  300

seq1  GAACCTGGAGTTCACTGATTTGGTACAACCAGCTGGAGAGTGAGCTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGGAGTTCACTGATTTGGTACAACCAGCTGGAGAGTGAGCTCTAG  350

seq1  GGACCCACTTCTCTCTCCCTCTATAGAGGGATTACAGACGATGCTGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCACTTCTCTCTCCCTCTATAGAGGGATTACAGACGATGCTGGCTA  400

seq1  GTTTTACGTCAACTTGATACACGCTGGCATCATCAGAGAGAAGGGAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACGTCAACTTGATACACGCTGGCATCATCAGAGAGAAGGGAGCCT  450

seq1  CAACTGAGAAAATGTCTCCATAAGACTGAGCAAGCCTATAGGACATTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAGAAAATGTCTCCATAAGACTGAGCAAGCCTATAGGACATTTCC  500

seq1  TTAATTAGAGATTGATGGGCCCAGCCCATTGTGGGTGGTGCTGTTCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAGAGATTGATGGGCCCAGCCCATTGTGGGTGGTGCTGTTCTGGG  550

seq1  CTGGGTCCTGGGTTCTATAAGAAAGCAGCTGAACAAGCAAGGATGCACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCTGGGTTCTATAAGAAAGCAGCTGAACAAGCAAGGATGCACAA  600

seq1  ACAAGCCAGTAAGCAGCATCCCTCCATGGTTTCTGCATCAGCTCCTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCAGTAAGCAGCATCCCTCCATGGTTTCTGCATCAGCTCCTGCCT  650

seq1  CCAGGTCCCTGCCCTCTCTGAGTTCCTCACTTCCTTCGGTGATGGACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCCCTGCCCTCTCTGAGTTCCTCACTTCCTTCGGTGATGGACTAG  700

seq1  GACGTGGAAGTGTGAGCCACATAGACACTTTCCTTCCCAGCTTACGGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGGAAGTGTGAGCCACATAGACACTTTCCTTCCCAGCTTACGGTTG  750

seq1  GTCATAGTGCTTCATCACAGCCACACTACTCCTCACTAGGACACAGAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGTGCTTCATCACAGCCACACTACTCCTCACTAGGACACAGAGGT  800

seq1  AGCTGCTGGAGGTGCTTTTGTATATGGATGCTGGGATCTGAACTCAGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGGAGGTGCTTTTGTATATGGATGCTGGGATCTGAACTCAGCTC  850

seq1  CACAGCCTTATGTTGGATAGAAAGAATCTTGTGTATATGGGCTTTGAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTTATGTTGGATAGAAAGAATCTTGTGTATATGGGCTTTGAACC  900

seq1  TGAAGTGGTGAGAGAGAACTCAC-TCGAAATAATGCACATGAGTAGATTT  949
      |||||||||||||||||  |||| |||||||||||||||| |||||||||
seq2  TGAAGTGGTGAGAGAGACTTCACTTCGAAATAATGCACATTAGTAGATTT  950

seq1  CTTTTCTTTTCTT--TTCTTTTTTTTTTTTTTTCAAGACAGGGTTTCTCT  997
      |||||||||||||  || |||||||||||||||||  ||||| |||||||
seq2  CTTTTCTTTTCTTTCTTTTTTTTTTTTTTTTTTCAGAACAGGTTTTCTCT  1000

seq1  GTATAGCCCTGG-CTGTCCTGGAAC-TCACTTTGCAGACCAGGCT-GACC  1044
      |||||  ||||| ||||||| |||| ||||||||||||||||||| ||| 
seq2  GTATAAGCCTGGCCTGTCCTTGAACTTCACTTTGCAGACCAGGCTGGACT  1050

seq1  TCAAACTCA-GAAAT  1058
        ||||||| |||||
seq2  ATAAACTCAGGAAAT  1065

seq1: chr11_104576398_104577503
seq2: B6Ng01-231N17.g_70_1167 (reverse)

seq1  AAAGTTCTGCAGTTTGGTTAAGCTTATTAC-AAAAACAAGCTCTATCTTC  49
      |||| |||||||||||||| ||| || ||| |||||||||||||||||||
seq2  AAAGGTCTGCAGTTTGGTT-AGCCTAATACAAAAAACAAGCTCTATCTTC  49

seq1  AATTTCCCCCAACTTAGGTTTTCCAGGGACAGCAATTATTTGACTATTTT  99
      |||||||||| ||||||| |||||||||||||||||   |||||||||||
seq2  AATTTCCCCC-ACTTAGG-TTTCCAGGGACAGCAAT--ATTGACTATTTT  95

seq1  AGCTGACTCCTTGCTCTCCATACTTAGAATTTATTGTTGATTTTTTTTTT  149
      ||||||||||||||||||||||||||||| |||||||||| |||||||||
seq2  AGCTGACTCCTTGCTCTCCATACTTAGAA-TTATTGTTGA-TTTTTTTTT  143

seq1  ACTAAAATTAATTGACAAATATATACACTTATGTG-AAAAAGTATGATAA  198
      ||||||||||| |||| ||||||||||| |||||| ||||||||||||||
seq2  ACTAAAATTAA-TGAC-AATATATACAC-TATGTGAAAAAAGTATGATAA  190

seq1  CTTTTGTAATGGACACACTTTTTGATCGAAGATAATTATTTGTATTAGGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTAATGGACACACTTTTTGATCGAAGATAATTATTTGTATTAGGA  240

seq1  ACTGTCAAACTTTTAAGAATTTTTCAAATTTTTGAGAGTGTGAGCTTCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAAACTTTTAAGAATTTTTCAAATTTTTGAGAGTGTGAGCTTCCT  290

seq1  GTTCTGTCCTCAGCATCCACACTTCTCACACACAAGTCTATTCTTCCAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTCCTCAGCATCCACACTTCTCACACACAAGTCTATTCTTCCAAG  340

seq1  ATGCTTATGACCAATGTAAGGAGCGCCACATTCAGTCCTGATGTTAATAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTATGACCAATGTAAGGAGCGCCACATTCAGTCCTGATGTTAATAA  390

seq1  ACCTCTGAGAACACTGCGTATAGCTGAGGTACATAGCACTTCTTTCTGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGAGAACACTGCGTATAGCTGAGGTACATAGCACTTCTTTCTGAT  440

seq1  TGTATAACATTAATCCCATTCTTCGAATTAATAATTGTCATTTATTTATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAACATTAATCCCATTCTTCGAATTAATAATTGTCATTTATTTATC  490

seq1  TGCTTGTTCTTTTTTAAAAGCATCTTTACTACTGATTTGACCTCAAATGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTCTTTTTTAAAAGCATCTTTACTACTGATTTGACCTCAAATGT  540

seq1  TCTCAAATGTCCAACAGTTATCTTTGTAAGTTTGGGTGTACCAGATATTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAATGTCCAACAGTTATCTTTGTAAGTTTGGGTGTACCAGATATTC  590

seq1  TGTCAGCGCTGTCTTAATGCCCAAACTTGTCTTTCAGTACTCGGATACAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCGCTGTCTTAATGCCCAAACTTGTCTTTCAGTACTCGGATACAG  640

seq1  AGTTCCGACAACTTGCATGCTGGGGAACTACTGGATTTTGTTGATCTTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCGACAACTTGCATGCTGGGGAACTACTGGATTTTGTTGATCTTTG  690

seq1  CATCTTCTGGACGTTTACATTCAAGGCTTCCCTGTTGCTTATTTTCTAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTGGACGTTTACATTCAAGGCTTCCCTGTTGCTTATTTTCTAGG  740

seq1  CTCTTCACTTCCCTATCCGATGTTGTCTTTGTGTTTAACTAATAGAGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCACTTCCCTATCCGATGTTGTCTTTGTGTTTAACTAATAGAGAAA  790

seq1  CATTTAATTGTATTACTTGGTTTTATAAAAACAGATATGTATTTTAGAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATTGTATTACTTGGTTTTATAAAAACAGATATGTATTTTAGAAA  840

seq1  TGGATTATTTTTCAGATGAATGTTTCTCAAATTCTTCTTTCAGTCTGCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTATTTTTCAGATGAATGTTTCTCAAATTCTTCTTTCAGTCTGCAA  890

seq1  ACTACTGTTTCCTAAGCTATCTAGAAGTGTCTTAGTTTAATATAATCCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGTTTCCTAAGCTATCTAGAAGTGTCTTAGTTTAATATAATCCCA  940

seq1  TTTACCTGTTTTTTTTTCCTTTTGGCATCATATAAAAATTGTTGCCCTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTGTTTTTTTTTCCTTTTGGCATCATATAAAAATTGTTGCCCTTA  990

seq1  TTAATGGCTTGAAACATTTTTCTGTGTTTTCTTCAAGTAGATTCATGGTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGCTTGAAACATTTTTCTGTGTTTTCTTCAAGTAGATTCATGGTT  1040

seq1  CGAGATCTTAGTTTATGTTTTTGATCTTTTGATTTTTATATGGAGAATTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATCTTAGTTTATGTTTTTGATCTTTTGATTTTTATATGGAGAATTT  1090

seq1  CTGAATTC  1106
      ||||||||
seq2  CTGAATTC  1098