BAC Information

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BAC

Clone NameB6Ng01-232E12
Chromosome11 (Build37)
Map Location 78,404,634 - 78,540,109
singlet/doubletdoublet
Overlap geneNlk, LOC100042674
Upstream geneTaok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, LOC100043570
Downstream gene1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232E12.bB6Ng01-232E12.g
ACCGA044657GA044658
length744901
definitionB6Ng01-232E12.b B6Ng01-232E12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,404,634 - 78,405,376)(78,539,218 - 78,540,109)
sequence
gaattccattgactacaggattaaacagtgcctaaatttaaaaggatgta
caagtttaagaactgaagtaagcaaccaaatgatctccttacaattatta
cacaagagaaaattaaaagtaaatacttttaaacaataatcaggccaagg
caaagtgtaaagatctgttagtctcaaggttttggctaataatgggaatg
ccctttaaattttaaaagtggtccattttaaaccaccagcaaaaaagttc
acaatccatccatcaacggcagctgtgttactttattaagcatggtactg
cccaaagcacatgcaatgggtaattcaaatccaagactccccccatcaga
gcaatgtaaccttccatttggttaattctgcatgtttatgaaaacctggt
actttgttcaaatgacaaaaagctggagactggatagccatgggaaggtg
gaattcagaatttttacaagacacttaaatgttacagaaattaagaaatc
cccccctttttgctatatttatattagaataatagacatgctttgtcctg
gttggggttaaaaactcattaaaagtttgcacgacgtcatgatttaactg
gaatgtttctttaggtaatcttcaattcacagcttttaaagtgatcagga
aaagacaggacagaagcagggtagaatctgtgctaacctgtagtacatgg
ttgaaaactgctgcttttcagatgtgtgtgggggtggggtgggg
gaattctggtgttaaatttcctttcctgagagagaaagcctcagctaggt
gggtggttctgaaacaaaaatagaggcaaaggcctgcctgatggagaagt
atcccaggcagtcttgtggatctcctcgtgtcttctgaagcaatgggttc
tgggtgcacagattaagggattaggtccttcagtgaagacctgtatgtgt
caaagtccagagtcagtgactccttgaaggacatagtcatgccctcaggg
aggagagaggacatcgtttgggattgccctttcacacatatcaaccctgt
ggcctctcagaattggcagtgggggtggttatcaaccatatacatttgga
aaatctccctagatggttctgattcattactctttcctctcctacaatac
tctctgctaatccaattgaaaaagtcactgaggtgagatttatgtaatgt
tttgtgttactttggcactggcaaggctacacggagcacataaaggaggt
atacatgagaacacagccatgacttagattttcaatagcatagtgaatgg
ggtcagacacaggctgtaggtgacagtactggctttgagacagggttttc
tctgtgtagccctggctttcctggaactcactctgtagaccaggcttagt
ctcaaactcagaaatcctcctgcctctgcctctctagtgctgggattaaa
ggtcatgtgccaccatgcccggcaaactattgcctttcttgaaagaatat
atatcactcaagagtgatgtctattaaccagttatccctcgtgctatttc
cttgctctgtcaagcaatcattgaaccttctttcctcaaacagaaagcac
ttgtcctacctttctgggctctagaatgcaatggtttggcacaggaaata
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_78404634_78405376
seq2: B6Ng01-232E12.b_37_780

seq1  GAATTCCATTGACTACAGGATTAAACAGTGCCTAAATTTAAAAGGATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGACTACAGGATTAAACAGTGCCTAAATTTAAAAGGATGTA  50

seq1  CAAGTTTAAGAACTGAAGTAAGCAACCAAATGATCTCCTTACAATTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTAAGAACTGAAGTAAGCAACCAAATGATCTCCTTACAATTATTA  100

seq1  CACAAGAGAAAATTAAAAGTAAATACTTTTAAACAATAATCAGGCCAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGAAAATTAAAAGTAAATACTTTTAAACAATAATCAGGCCAAGG  150

seq1  CAAAGTGTAAAGATCTGTTAGTCTCAAGGTTTTGGCTAATAATGGGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGTAAAGATCTGTTAGTCTCAAGGTTTTGGCTAATAATGGGAATG  200

seq1  CCCTTTAAATTTTAAAAGTGGTCCATTTTAAACCACCAGCAAAAAAGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAAATTTTAAAAGTGGTCCATTTTAAACCACCAGCAAAAAAGTTC  250

seq1  ACAATCCATCCATCAACGGCAGCTGTGTTACTTTATTAAGCATGGTACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCATCCATCAACGGCAGCTGTGTTACTTTATTAAGCATGGTACTG  300

seq1  CCCAAAGCACATGCAATGGGTAATTCAAATCCAAGACTCCCCCCATCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGCACATGCAATGGGTAATTCAAATCCAAGACTCCCCCCATCAGA  350

seq1  GCAATGTAACCTTCCATTTGGTTAATTCTGCATGTTTATGAAAACCTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTAACCTTCCATTTGGTTAATTCTGCATGTTTATGAAAACCTGGT  400

seq1  ACTTTGTTCAAATGACAAAAAGCTGGAGACTGGATAGCCATGGGAAGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTCAAATGACAAAAAGCTGGAGACTGGATAGCCATGGGAAGGTG  450

seq1  GAATTCAGAATTTTTACAAGACACTTAAATGTTACAGAAATTAAGAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATTTTTACAAGACACTTAAATGTTACAGAAATTAAGAAATC  500

seq1  CCCCCCTTTTTGCTATATTTATATTAGAATAATAGACATGCTTTGTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTTTTTGCTATATTTATATTAGAATAATAGACATGCTTTGTCCTG  550

seq1  GTTGGGGTTAAAAACTCATTAAAAGTTTGCACGACGTCATGATTTAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGTTAAAAACTCATTAAAAGTTTGCACGACGTCATGATTTAACTG  600

seq1  GAATGTTTCTTTAGGTAATCTTCAATTCACAGCTTTTAAAGTGATCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTCTTTAGGTAATCTTCAATTCACAGCTTTTAAAGTGATCAGGA  650

seq1  AAAGACAGGACAGAAGCAGGGTAGAATCTGTGCTAACCTGTAGTACATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGGACAGAAGCAGGGTAGAATCTGTGCTAACCTGTAGTACATGG  700

seq1  TTGAAAACTGCTGC-TTTCAGATGTGTGTGGGGGTGGGGTGGGG  743
      |||||||||||||| |||||||||||||||||||||||||||||
seq2  TTGAAAACTGCTGCTTTTCAGATGTGTGTGGGGGTGGGGTGGGG  744

seq1: chr11_78539218_78540109
seq2: B6Ng01-232E12.g_71_971 (reverse)

seq1  TTATTTCCTGTGCCAAACCATTGCA-TCTAGAG-CCAGAAAGGTAGG-CA  47
      ||||||||||||||||||||||||| ||||||| ||||||||||||| ||
seq2  TTATTTCCTGTGCCAAACCATTGCATTCTAGAGCCCAGAAAGGTAGGACA  50

seq1  AGTGCTTTCTGTATGA-GAAAGAAGGTTCAATGATTGCTTGACAGAGCAA  96
      |||||||||||| ||| |||||||||||||||||||||||||||||||||
seq2  AGTGCTTTCTGTTTGAGGAAAGAAGGTTCAATGATTGCTTGACAGAGCAA  100

seq1  GGAAATAGCACGAGGGATAACTGGTTAATAGACATCACTCTTGAGTGATA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAGCACGAGGGATAACTGGTTAATAGACATCACTCTTGAGTGATA  150

seq1  TATATTCTTTCAAGAAA-GCAATAGTTTGCCGGGCATGGTGGCACATG-C  194
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  TATATTCTTTCAAGAAAGGCAATAGTTTGCCGGGCATGGTGGCACATGAC  200

seq1  CTTTAATCCCAGCACTAGAGAGGCAGAGGCAGGAGGATTTCTGAGTTTGA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACTAGAGAGGCAGAGGCAGGAGGATTTCTGAGTTTGA  250

seq1  GACT-AGCCTGGTCTACAGAGTGAGTTCCAGGAAAGCCAGGGCTACACAG  293
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGCCTGGTCTACAGAGTGAGTTCCAGGAAAGCCAGGGCTACACAG  300

seq1  AG-AAACCCTGTCTCAAAGCCAGTACTGTCACCTACAGCCTGTGTCTGAC  342
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCCTGTCTCAAAGCCAGTACTGTCACCTACAGCCTGTGTCTGAC  350

seq1  CCCATTCACTATGCTATTGAAAATCTAAGTCATGGCTGTGTTCTCATGTA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCACTATGCTATTGAAAATCTAAGTCATGGCTGTGTTCTCATGTA  400

seq1  TACCTCCTTTATGTGCTCCGTGTAGCCTTGCCAGTGCCAAAGTAACACAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCTTTATGTGCTCCGTGTAGCCTTGCCAGTGCCAAAGTAACACAA  450

seq1  ATCATTACATAAATCTCACCTCAGTGACTTTTTCAATTGGATTAGCAGAG  492
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTACATAAATCTCACCTCAGTGACTTTTTCAATTGGATTAGCAGAG  500

seq1  AGTATTGTAGGAGAGGAAAGAGTAATGAATCAGAACCATCTAGGGAGATT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGTAGGAGAGGAAAGAGTAATGAATCAGAACCATCTAGGGAGATT  550

seq1  TTCCAAATGTATATGGTTGATAACCACCCCCACTGCCAATTCTGAGAGGC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATGTATATGGTTGATAACCACCCCCACTGCCAATTCTGAGAGGC  600

seq1  CACAGGGTTGATATGTGTGAAAGGGCAATCCCAAACGATGTCCTCTCTCC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGTTGATATGTGTGAAAGGGCAATCCCAAACGATGTCCTCTCTCC  650

seq1  TCCCTGAGGGCATGACTATGTCCTTCAAGGAGTCACTGACTCTGGACTTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAGGGCATGACTATGTCCTTCAAGGAGTCACTGACTCTGGACTTT  700

seq1  GACACATACAGGTCTTCACTGAAGGACCTAATCCCTTAATCTGTGCACCC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATACAGGTCTTCACTGAAGGACCTAATCCCTTAATCTGTGCACCC  750

seq1  AGAACCCATTGCTTCAGAAGACACGAGGAGATCCACAAGACTGCCTGGGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCATTGCTTCAGAAGACACGAGGAGATCCACAAGACTGCCTGGGA  800

seq1  TACTTCTCCATCAGGCAGGCCTTTGCCTCTATTTTTGTTTCAGAACCACC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTCCATCAGGCAGGCCTTTGCCTCTATTTTTGTTTCAGAACCACC  850

seq1  CACCTAGCTGAGGCTTTCTCTCTCAGGAAAGG-CATTTAACACCAGAATT  891
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  CACCTAGCTGAGGCTTTCTCTCTCAGGAAAGGAAATTTAACACCAGAATT  900

seq1  C  892
      |
seq2  C  901