BAC Information

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BAC

Clone NameB6Ng01-232L24
Chromosome11 (Build37)
Map Location 101,658,098 - 101,659,184
singlet/doubletsinglet
Overlap genenone
Upstream geneStat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4
Downstream geneMeox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232L24.bB6Ng01-232L24.g
ACCGA045004GA045005
length1,2191,082
definitionB6Ng01-232L24.b B6Ng01-232L24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaagatgatcctgttattcttactcctgatgattgagacaggga
taagtatacctttgtgggccgtagtaagatcatggccagtacccttacca
gtacattccaattcttctaccttgcctttgttttttgcaactgaatgttt
tttggatgcgccttgtgcacgacaaactcctcaagagccacgggtctata
atagtacgagttttcatttaaattatacactatgctttgtgcataatgtg
tataaaccttttacaccctgtatgtttttacagaaaaagattatctctaa
ttgggcagatcccattagccaaaataaagtgagctctggagtgttactta
atgctttaatgcaagttgctcaaggagcacaatcaggctcaaatgatgtt
ggaaataaggtaacttcacctataaacatcaccactattatgataaaggg
aaatgtgactattcccaaaagatcacaatggcctgttggcaatgctactg
ctaaacgcagcgtgccctggtgtcatccggaccttgcatttcctatagtt
ttttcaccttgtcaatcaaaaatttttcctcggaaagaaatagcaaaggg
ttttgttttgtcacctccattggatttcgccgtaatgaatgataaaggag
atgctacagggaaagaaaatatttggccatattaccaatggattttaagc
aatgaggcaggtgctagtaccagtctgtcagcctttgcattgctgactgg
aacctttcatgagatattgaatgtttctgccacacgttccaatatctctg
ctcatttagataatgtaacctctaatagagttatcagaaatatgactact
tctccagtagaagtttgtgtcaatcctccatttttctttatattgtctga
atttcaaaataatacagaatggttagattgtacaaatgtcacttgttttt
tgacgcaatgctggaatgggaccaaatttctagccttagtgggtacagct
accacctttgtccctgttgcccgttgagcagatccagaagagttcccaat
tatgagttcttgtgcggcaaaggaagagattttggaatcacagctgccat
gtactgcaattgtggggttctgcagcgtcagccggtttaccgcaggattg
cctatgacattcaatcaggtaaattactgtcgtggacactccataaggct
gcagagatgatagcgcaag
gaattcaccagctggctagattggtgagctggtgagcaccagttatcctc
ctcccagagatgggcttaagagtgctccctggccaggcagtggtgatgca
cgcctttaatcccagcacttgggaagcaggggcaggtggatttctgagtt
caaggccagcctggtctacagagtaaacttcaggacagccagggctacac
agagaaaccctgtcttggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagg
agaaaaagcaagcaagcaagcaagcaaactctctggggatctggactcag
gtcttcatgctgattcagcaaatatcttacccacttggcccctctcccta
accctgaggctcacccttctggctgcactagcactaacttttagaaccag
agctcctgacaaaagcttgcttcactgcctcccggaggccagcagaggtc
cagccaaggctagtcaggagaacccaggtgtgcatctacgaagagaaatg
actcctcttcctcttgcccttacttactaacagtgtttgaggacccaggg
ggcaatcacaagctgacctggaatctcaggtaggaaccagctcagactgc
tctcaagaaaatcctactgcctgagttctgggacaatatcctaagccact
ggtatgtctaaagctaggtaaggagacctgcagtttctctctctgctcta
cagccagccaacaaatgagagatcacaaagacaagatgccgcacagaaac
tcctaagacaggcatcccaaaggttttcaaagtcctgtctcctccctccc
attgtcccttccatacctccctggcgtcttcccttttccttctgcatacc
agccttggggctttggtcctgatgatatttttctcaggctgggatgactt
gcccctgtccccactccagtctggttctatcaacgcccaagtcattccac
ctcctccaaaagttcttcttgtgatcttcaggaaaagaagaagctctttc
ttgttctctcacttgaacactcgagctcagtcttcctagctgtaatcaag
gcttagctctgaatcatttccctccctggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101658098_101659184
seq2: B6Ng01-232L24.g_67_1148 (reverse)

seq1  CAACCCAAGGGAGGGATATGATTTCAGAAGCCTAAGCCTTGATTACAGCC  50
      |||||  ||||||||| |||| ||||||   ||||||||||||||||| |
seq2  CAACC--AGGGAGGGAAATGA-TTCAGA--GCTAAGCCTTGATTACAG-C  44

seq1  TAGGGAGGCCTGAGCTCGAGTGTTCCAAGTG-GAGAGACAGAAAGAGCTT  99
      || ||| | ||||||||||||||| |||||| ||||   |||||||||||
seq2  TA-GGAAGACTGAGCTCGAGTGTT-CAAGTGAGAGAACAAGAAAGAGCTT  92

seq1  C-TCTTTTCCTGGAAAGATCAC-AGAAGAACTTTTGGAGGAGGTGGAATG  147
      | ||||||||||  |||||||| |||||||||||||||||||||||||||
seq2  CTTCTTTTCCTG--AAGATCACAAGAAGAACTTTTGGAGGAGGTGGAATG  140

seq1  ACTTGGGCGTTGATAG-ACCAGACTGGAGTGGGGACAGGGGCAAGTCATC  196
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACTTGGGCGTTGATAGAACCAGACTGGAGTGGGGACAGGGGCAAGTCATC  190

seq1  CCAGCCTGAG-AAAATATCATCAGGACCAAAGCCCCAAGGCTGGTATGCA  245
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGAGAAAAATATCATCAGGACCAAAGCCCCAAGGCTGGTATGCA  240

seq1  GAAGGAAAAGGGAAGACGCCAGGGAGGTATGGAAGGGACAATGGGAGGGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAAGGGAAGACGCCAGGGAGGTATGGAAGGGACAATGGGAGGGA  290

seq1  GGAGACAGGACTTTGAAAACCTTTGGGATGCCTGTCTTAGGAGTTTCTGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGGACTTTGAAAACCTTTGGGATGCCTGTCTTAGGAGTTTCTGT  340

seq1  GCGGCATCTTGTCTTTGTGATCTCTCATTTGTTGGCTGGCTGTAGAGCAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCATCTTGTCTTTGTGATCTCTCATTTGTTGGCTGGCTGTAGAGCAG  390

seq1  AGAGAGAAACTGCAGGTCTCCTTACCTAGCTTTAGACATACCAGTGGCTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAACTGCAGGTCTCCTTACCTAGCTTTAGACATACCAGTGGCTT  440

seq1  AGGATATTGTCCCAGAACTCAGGCAGTAGGATTTTCTTGAGAGCAGTCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATTGTCCCAGAACTCAGGCAGTAGGATTTTCTTGAGAGCAGTCTG  490

seq1  AGCTGGTTCCTACCTGAGATTCCAGGTCAGCTTGTGATTGCCCCCTGGGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTTCCTACCTGAGATTCCAGGTCAGCTTGTGATTGCCCCCTGGGT  540

seq1  CCTCAAACACTGTTAGTAAGTAAGGGCAAGAGGAAGAGGAGTCATTTCTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACACTGTTAGTAAGTAAGGGCAAGAGGAAGAGGAGTCATTTCTC  590

seq1  TTCGTAGATGCACACCTGGGTTCTCCTGACTAGCCTTGGCTGGACCTCTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTAGATGCACACCTGGGTTCTCCTGACTAGCCTTGGCTGGACCTCTG  640

seq1  CTGGCCTCCGGGAGGCAGTGAAGCAAGCTTTTGTCAGGAGCTCTGGTTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCCGGGAGGCAGTGAAGCAAGCTTTTGTCAGGAGCTCTGGTTCT  690

seq1  AAAAGTTAGTGCTAGTGCAGCCAGAAGGGTGAGCCTCAGGGTTAGGGAGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTAGTGCTAGTGCAGCCAGAAGGGTGAGCCTCAGGGTTAGGGAGA  740

seq1  GGGGCCAAGTGGGTAAGATATTTGCTGAATCAGCATGAAGACCTGAGTCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCAAGTGGGTAAGATATTTGCTGAATCAGCATGAAGACCTGAGTCC  790

seq1  AGATCCCCAGAGAGTTTGCTTGCTTGCTTGCTTGCTTTTTCTCCTTTTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCCAGAGAGTTTGCTTGCTTGCTTGCTTGCTTTTTCTCCTTTTTT  840

seq1  TTTTTTTTTTTTTTTTTTTTTTTTCCAAGACAGGGTTTCTCTGTGTAGCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTTCCAAGACAGGGTTTCTCTGTGTAGCC  890

seq1  CTGGCTGTCCTGAAGTTTACTCTGTAGACCAGGCTGGCCTTGAACTCAGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTCCTGAAGTTTACTCTGTAGACCAGGCTGGCCTTGAACTCAGA  940

seq1  AATCCACCTGCCCCTGCTTCCCAAGTGCTGGGATTAAAGGCGTGCATCAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACCTGCCCCTGCTTCCCAAGTGCTGGGATTAAAGGCGTGCATCAC  990

seq1  CACTGCCTGGCCAGGGAGCACTCTTAAGCCCATCTCTGGGAGGAGGATAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCTGGCCAGGGAGCACTCTTAAGCCCATCTCTGGGAGGAGGATAA  1040

seq1  CTGGTGCTCACCAGCTCACCAATCTAGCCAGCTGGTGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCTCACCAGCTCACCAATCTAGCCAGCTGGTGAATTC  1082