BAC Information

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BAC

Clone NameB6Ng01-233D16
Chromosome11 (Build37)
Map Location 27,147,775 - 27,268,407
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
Downstream geneLOC100042377, EG626571
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233D16.bB6Ng01-233D16.g
ACCGA045354GA045355
length1,1861,124
definitionB6Ng01-233D16.b B6Ng01-233D16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,267,220 - 27,268,407)(27,147,775 - 27,148,908)
sequence
gaattcttgaaaacagtgacaacaggacaccatgttcactgtggctcttt
tcttgatactacaaaatttaatccacctagaagttcatcagctagagaac
aaacaatgaaaatgtgatgcctctatacaatagacttttgttcagctata
aagataagaaattgggaaaacaatggatggaactggaaaaatattctacg
gagtgagaaagcccaggtcttaaaagacaaatactatataattctctctc
atatgtgaattatgcatttgactgtatagacttttatatttaagttgaac
tgtgaaactatacaaatgagctctgcagcagtccaacactctacaatcat
gagttctaatcagctagtcattcttgtccaatctttatgacaactgcacc
ttttttctaagactatcagttcatgtttaatacttaatcatctttataat
caaattgaataatttagttttaatctgccttaaatttattgagatttcat
tatgtccatcttagtcatataattttagatgctatgttttttattttggc
aatttacatttgactgtttttcataatctcttcatgtttatcttattttg
ggccactttaaagttgaagtcttttatttttatttaaaggtaaggattta
atcttatattttctttgaagatgtcttcctctttatttcttaagcatatg
cttttacaaatatggtcatcttcttaaacttttaatatttttactcatgc
attattttctggaataatctgtttgttcttatacatatagattcagggaa
tatgcctgcctactcatcatatccaatctgtttagcatttctatggtcaa
attctgcactctgctgtttctatttttctcttccattttggttaatgttt
ctctatttaatttaactattatgggttgcttttagtacttcatctatagt
ctccactatgtatctatttttaaatcattctttctaccactgcaaattta
gtcattatatctataaagagggactttagctatatcacctgaagaggttt
gttcattgggatggagtatcatttcaaattgtttaccttactttatacat
ccacagattaatgcaaaatgccaggtgtaaaggattttttgctggttagc
gaaggaaaactgaatcctctctccaacatacatagg
gaattcacattctctgcaagaacatccaaatctattaattgtcaagacat
gtctgcatctactcaaaaatattatcaatgtttagatttatagtgatcct
ctgacaaagattttttacttaatatgatatataaactgattttcccccaa
agctacaaaatcactgtttaaattggaactaaactttgacccagcccata
cttcctgcttccatatggcttcacaatcaaagtcctttttgtttgtttta
gttcattttaaaagattgtaggttgcttaataaaaaatatttgtccttta
gcatttgtctcataagtgatggatattcatgccattaactttatgagtgt
ttgcaatacagaagctggatttattaaaaattattgagaaaaaagatata
ttagaaaaattgaaagaaattctgagtgtgcaaagagtatatatgaaaga
aagaagacaattgaacttctggtctagagttttcatagggacatggcaga
aactggacacagaatgaggcaatttctattaaaaatagttaatacactga
actatcaatcaatagctagccagtggaaggtctacatgctctgtgcatgc
taccctggttttatcaaggatatgactgcacatcgtaactacattttgga
ctgatactacagttgtgataatattagatatccggtcattagattatgat
ttaacatagatatttgggattttaagtttatatggagtatttggagaata
ttttgaaacatattttgttcttatttgaaaaacacaactagtaatattca
tataaaatgctttcttactgattttttacaattttagtaaatgtaatgag
tacctagcactgattcacgtatagaggcaaagctatttaaaatgtgtatt
ccctgacagtgtctaccatctctttctattgttagactccctggtattaa
agcctgatatattttccttcatatcccagagttacttcaaaatggttgat
cagaaatttctatgagatgttaaaacatttagagttcactcaaatgcact
gtatcagaaactttcagattgtctcttagatttgtatactactctgccct
tggtagtcccacatagtagttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_27267220_27268407
seq2: B6Ng01-233D16.b_46_1231 (reverse)

seq1  CCTATGTATGTTGGA-AGAGG-GTCAGTTTTTCTTTCTGCTTTACAGC-A  47
      ||||||||||||||| |||||  |||||||| |||   |||   |||| |
seq2  CCTATGTATGTTGGAGAGAGGATTCAGTTTTCCTT--CGCTAACCAGCAA  48

seq1  AAATTCTTTTACACCCTGCCATTTTTGCATTTAATCTGTGATGGTATAAA  97
      ||| || |||||| |||| || ||||||| ||||||||||   |||||||
seq2  AAAATCCTTTACA-CCTGGCA-TTTTGCA-TTAATCTGTGGATGTATAAA  95

seq1  GTTAGGTTAAACAATTTGAAATGGATACCTCCAT-CCAATG-ACAAACCT  145
      || ||| ||||||||||||||| |||| |||||| |||||| ||||||||
seq2  GTAAGG-TAAACAATTTGAAAT-GATA-CTCCATCCCAATGAACAAACCT  142

seq1  CTTCAGGTGATATAGCT-AAGTCCCTCTTTATAGATATTAATGACTTAAA  194
      ||||||||||||||||| ||||||||||||||||||| ||||||| ||||
seq2  CTTCAGGTGATATAGCTAAAGTCCCTCTTTATAGATA-TAATGAC-TAAA  190

seq1  TTTGCAGTGGTAGAAAGAATGATTT-AAAATAGATACATAGTGGAGACTA  243
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTGCAGTGGTAGAAAGAATGATTTAAAAATAGATACATAGTGGAGACTA  240

seq1  TAGATGAAGTACTAAAAGCAA-CCATAATAGTTAAATTAAATAGAGAAAC  292
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAGATGAAGTACTAAAAGCAACCCATAATAGTTAAATTAAATAGAGAAAC  290

seq1  ATTAACCAAAATGGAAGAGAAAAATAGAAACAGCAGAGTGCAGAATTTGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCAAAATGGAAGAGAAAAATAGAAACAGCAGAGTGCAGAATTTGA  340

seq1  CCATAGAAATGCTAAACAGATTGGATATGATGAGTAGGCAGGCATATTCC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAAATGCTAAACAGATTGGATATGATGAGTAGGCAGGCATATTCC  390

seq1  CTGAATCTATATGTATAAGAACAAACAGATTATTCCAGAAAATAATGCAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCTATATGTATAAGAACAAACAGATTATTCCAGAAAATAATGCAT  440

seq1  GAGTAAAAATATTAAAAGTTTAAGAAGATGACCATATTTGTAAAAGCATA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAAATATTAAAAGTTTAAGAAGATGACCATATTTGTAAAAGCATA  490

seq1  TGCTTAAGAAATAAAGAGGAAGACATCTTCAAAGAAAATATAAGATTAAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAGAAATAAAGAGGAAGACATCTTCAAAGAAAATATAAGATTAAA  540

seq1  TCCTTACCTTTAAATAAAAATAAAAGACTTCAACTTTAAAGTGGCCCAAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACCTTTAAATAAAAATAAAAGACTTCAACTTTAAAGTGGCCCAAA  590

seq1  ATAAGATAAACATGAAGAGATTATGAAAAACAGTCAAATGTAAATTGCCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATAAACATGAAGAGATTATGAAAAACAGTCAAATGTAAATTGCCA  640

seq1  AAATAAAAAACATAGCATCTAAAATTATATGACTAAGATGGACATAATGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAACATAGCATCTAAAATTATATGACTAAGATGGACATAATGA  690

seq1  AATCTCAATAAATTTAAGGCAGATTAAAACTAAATTATTCAATTTGATTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAATAAATTTAAGGCAGATTAAAACTAAATTATTCAATTTGATTA  740

seq1  TAAAGATGATTAAGTATTAAACATGAACTGATAGTCTTAGAAAAAAGGTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGATTAAGTATTAAACATGAACTGATAGTCTTAGAAAAAAGGTG  790

seq1  CAGTTGTCATAAAGATTGGACAAGAATGACTAGCTGATTAGAACTCATGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTCATAAAGATTGGACAAGAATGACTAGCTGATTAGAACTCATGA  840

seq1  TTGTAGAGTGTTGGACTGCTGCAGAGCTCATTTGTATAGTTTCACAGTTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAGTGTTGGACTGCTGCAGAGCTCATTTGTATAGTTTCACAGTTC  890

seq1  AACTTAAATATAAAAGTCTATACAGTCAAATGCATAATTCACATATGAGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAATATAAAAGTCTATACAGTCAAATGCATAATTCACATATGAGA  940

seq1  GAGAATTATATAGTATTTGTCTTTTAAGACCTGGGCTTTCTCACTCCGTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTATATAGTATTTGTCTTTTAAGACCTGGGCTTTCTCACTCCGTA  990

seq1  GAATATTTTTCCAGTTCCATCCATTGTTTTCCCAATTTCTTATCTTTATA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTTTCCAGTTCCATCCATTGTTTTCCCAATTTCTTATCTTTATA  1040

seq1  GCTGAACAAAAGTCTATTGTATAGAGGCATCACATTTTCATTGTTTGTTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACAAAAGTCTATTGTATAGAGGCATCACATTTTCATTGTTTGTTC  1090

seq1  TCTAGCTGATGAACTTCTAGGTGGATTAAATTTTGTAGTATCAAGAAAAG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTGATGAACTTCTAGGTGGATTAAATTTTGTAGTATCAAGAAAAG  1140

seq1  AGCCACAGTGAACATGGTGTCCTGTTGTCACTGTTTTCAAGAATTC  1188
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGTGAACATGGTGTCCTGTTGTCACTGTTTTCAAGAATTC  1186

seq1: chr11_27147775_27148908
seq2: B6Ng01-233D16.g_65_1188

seq1  GAATTCACATTCTCTGCAAGAACATCCAAATCTATTAATTGTCAAGACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTCTCTGCAAGAACATCCAAATCTATTAATTGTCAAGACAT  50

seq1  GTCTGCATCTACTCAAAAATATTATCAATGTTTAGATTTATAGTGATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATCTACTCAAAAATATTATCAATGTTTAGATTTATAGTGATCCT  100

seq1  CTGACAAAGATTTTTTACTTAATATGATATATAAACTGATTTTCCCCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAAGATTTTTTACTTAATATGATATATAAACTGATTTTCCCCCAA  150

seq1  AGCTACAAAATCACTGTTTAAATTGGAACTAAACTTTGACCCAGCCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAAAATCACTGTTTAAATTGGAACTAAACTTTGACCCAGCCCATA  200

seq1  CTTCCTGCTTCCATATGGCTTCACAATCAAAGTCCTTTTTGTTTGTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGCTTCCATATGGCTTCACAATCAAAGTCCTTTTTGTTTGTTTTA  250

seq1  GTTCATTTTAAAAGATTGTAGGTTGCTTAATAAAAAATATTTGTCCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTTAAAAGATTGTAGGTTGCTTAATAAAAAATATTTGTCCTTTA  300

seq1  GCATTTGTCTCATAAGTGATGGATATTCATGCCATTAACTTTATGAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTCTCATAAGTGATGGATATTCATGCCATTAACTTTATGAGTGT  350

seq1  TTGCAATACAGAAGCTGGATTTATTAAAAATTATTGAGAAAAAAGATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATACAGAAGCTGGATTTATTAAAAATTATTGAGAAAAAAGATATA  400

seq1  TTAGAAAAATTGAAAGAAATTCTGAGTGTGCAAAGAGTATATATGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAATTGAAAGAAATTCTGAGTGTGCAAAGAGTATATATGAAAGA  450

seq1  AAGAAGACAATTGAACTTCTGGTCTAGAGTTTTCATAGGGACATGGCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGACAATTGAACTTCTGGTCTAGAGTTTTCATAGGGACATGGCAGA  500

seq1  AACTGGACACAGAATGAGGCAATTTCTATTAAAAATAGTTAATACACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGACACAGAATGAGGCAATTTCTATTAAAAATAGTTAATACACTGA  550

seq1  ACTATCAATCAATAGCTAGCCAGTGGAAGGTCTACATGCTCTGTGCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCAATCAATAGCTAGCCAGTGGAAGGTCTACATGCTCTGTGCATGC  600

seq1  TACCCTGGTTTTATCAAGGATATGACTGCACATCGTAACTACATTTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGGTTTTATCAAGGATATGACTGCACATCGTAACTACATTTTGGA  650

seq1  CTGATACTACAGTTGTGATAATATTAGATATCCGGTCATTAGATTATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACTACAGTTGTGATAATATTAGATATCCGGTCATTAGATTATGAT  700

seq1  TTAACATAGATATTTGGGATTTTAAGTTTATATGGAGTATTTGGAGAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATAGATATTTGGGATTTTAAGTTTATATGGAGTATTTGGAGAATA  750

seq1  TTTTGAAACATATTTTGTTCTTATTTGAAAAACACAACTAGTAATATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAACATATTTTGTTCTTATTTGAAAAACACAACTAGTAATATTCA  800

seq1  TATAAAATGCTTTCTTACTGATTTTTTACAATTTTAGTAAATGTAATGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATGCTTTCTTACTGATTTTTTACAATTTTAGTAAATGTAATGAG  850

seq1  TACCTAGCACTGATTCACGTATAGAGGCAAAGCTATTTAAAATGTGTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAGCACTGATTCACGTATAGAGGCAAAGCTATTTAAAATGTGTATT  900

seq1  CCCTGACAGTGTCTACCATCTCTTTCTATTGTTAGACTCCCTGGGTATTA  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCCTGACAGTGTCTACCATCTCTTTCTATTGTTAGACTCCCT-GGTATTA  949

seq1  AAGCCTGATATATTTTCCTTCATATCCCAGAAGTTACTTCAAAATGGTTG  1000
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGCCTGATATATTTTCCTTCATATCCCAG-AGTTACTTCAAAATGGTTG  998

seq1  ATCAGAAATTTCTAATGAGATTGGTTAAAACATTTAGAGTTCACTCAAAT  1050
      ||||||||||||| |||||||  |||||||||||||||||||||||||||
seq2  ATCAGAAATTTCT-ATGAGAT--GTTAAAACATTTAGAGTTCACTCAAAT  1045

seq1  GCACTGTATCAGAAACCTTCAGGATGTCTCTTAAGAATTTGTATACTAAC  1100
      |||||||||||||||| |||||  |||||||||   ||||||||||| ||
seq2  GCACTGTATCAGAAACTTTCAGATTGTCTCTTA--GATTTGTATACT-AC  1092

seq1  TCCTGCCCTGGTTAGTTCCACAGTAGTAGTTCCT  1134
      | ||||||| | |||| ||||| |||||||||||
seq2  T-CTGCCCTTGGTAGTCCCACA-TAGTAGTTCCT  1124