BAC Information

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BAC

Clone NameB6Ng01-233I02
Chromosome11 (Build37)
Map Location 73,827,295 - 73,828,384
singlet/doubletsinglet
Overlap genenone
Upstream geneP2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398
Downstream geneOlfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233I02.bB6Ng01-233I02.g
ACCGA045544GA045545
length1,2211,088
definitionB6Ng01-233I02.b B6Ng01-233I02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgccctttatatccctcacagagcgacactggtcagctctatga
taacccttgccacacttagagcaaagagtgagagtccctccctgtttatc
tggagctctgcaatctttcttaaaatgcccaggctttccgcaattaaaac
atgtcctctgatcatttctgctcatggagcggttctgagattggaggatg
gcggccgctaagcctgcattggtgagaggtcccccaagctctcgacagac
cctgagccagtcttgtaagcctttgttctttcttggggctatggccgctc
ggcactcctttgtggcttgctcatagattagctgttctaccagaggcgcg
gcttgctctgaatctccaaaaatacgctctgctgcctctgtcattctggc
cacaaaatctgagaaggactcctgaggtccctggacaacttttgttaatt
gaccagtggtttcacctgctcgggagagcgccttccaggccctaatagcc
gtggaggaaacttgggcataagctccccaatggtagtttgtttgatcagc
agaataagctccctgacccgttaacaagtcaaaagtccaatctctctgct
ctggagtcaaagcagctgcgtttgctcgggcctgcgcttgtgcagtttca
tgccaaagagctctccattccatatatttgcccatactagggagagcggc
ttttacaaccgtttgccagtcggcaggagttagtgccatgccggcaagcc
tgtctaactgcaccaaggtaaaattagcattggttccgtatttacggacc
gactcggcaagctctttaatctgtaagtattctaccggagcgtggacaac
gcccaccctcggctccttcaaagaccgggaatgcctgttgtattttcctt
tgttcctctctgggaatgaatgagtctgcgcactgcctctctgcgcattg
tctctctgcgcactggcctctctgcgcattctctcttgcgcattgctctc
ctgcgcatctctctgcgcattgccttctcttgcgcattgctgacgcacta
cgcaggcgggggcttccgcatagggcggacctttgaaacgactgcctgag
gcccaatccagcaactggtcttcgcagtcgcctttttgcttgcatactgg
attagcttagcacttaacctgggcctggataccgtttattcctcatatat
gagaggactgtgcggctatct
gaattccagatgctgggctgcctgaatatctgtgaccaccttgttggagg
tctcaagttaaatgctctgaggcaggcatggaaaagagagggagcaagtt
ccactctgtcagtcttaagttttgagatttctggagtttgaacatactcc
acctcagcagttctgtgccaattcctctagtggcacaggtcacatgtccc
atgtatgagcacttaagatgcaatacagtccagtacctaattccatcttc
aacctgtctctccttgtacagactgcagagttgttggactccatctcaac
atggcagagcctctggcaacgctttttcttgaattatgtagtgctcacaa
ttcatgccattaagaagtatggtataattaaagcaaagcctcgtgtaaag
tctgctgactatggcagaatgctgactgaaacactaactcatagaggtca
aatctcaggttatatactcctagtttgctctttaattatgtttactctat
ggtctggtcggctttgaacatgaaagttcccatcattcctacttttgaga
tacctctgcataattagatcccagaatgctttagctatcatttccaagat
ttctcaagaacttaaccctttccttcactggcctagggcacaactatggc
actatctgtagtttgtttggaccagaggaatgagtgtttccttgacacag
atcataagagagatacatgccatctacacttgatcagacatcaatttaga
tagtgttgctgtcattttactttttgacctttctaacaatttagttcttt
aataattttacatgtttatataatgcatactggttacatcctccttctat
cacctcacgtctcactcccatccctatcaccctcccccaccccacttctt
tctgaccttttctcaatttatggctttgggttttatcttatgaaccattt
agttaactagggctgtccatgtgatgctgagactgcccattggatcctac
tagattaccaggggaatacctaacattacttctctttccctaattctgtc
agtaggaatgatgtgttgtgaggaaggaggatcctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_73827295_73828384
seq2: B6Ng01-233I02.g_68_1155

seq1  GAATTCCAGATGCTGGGCTGCCTGAATATCTGTGACCACCTTGTTGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATGCTGGGCTGCCTGAATATCTGTGACCACCTTGTTGGAGG  50

seq1  TCTCAAGTTAAATGCTCTGAGGCAGGCATGGAAAAGAGAGGGAGCAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGTTAAATGCTCTGAGGCAGGCATGGAAAAGAGAGGGAGCAAGTT  100

seq1  CCACTCTGTCAGTCTTAAGTTTTGAGATTTCTGGAGTTTGAACATACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTGTCAGTCTTAAGTTTTGAGATTTCTGGAGTTTGAACATACTCC  150

seq1  ACCTCAGCAGTTCTGTGCCAATTCCTCTAGTGGCACAGGTCACATGTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGCAGTTCTGTGCCAATTCCTCTAGTGGCACAGGTCACATGTCCC  200

seq1  ATGTATGAGCACTTAAGATGCAATACAGTCCAGTACCTAATTCCATCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGAGCACTTAAGATGCAATACAGTCCAGTACCTAATTCCATCTTC  250

seq1  AACCTGTCTCTCCTTGTACAGACTGCAGAGTTGTTGGACTCCATCTCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTCTCTCCTTGTACAGACTGCAGAGTTGTTGGACTCCATCTCAAC  300

seq1  ATGGCAGAGCCTCTGGCAACGCTTTTTCTTGAATTATGTAGTGCTCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGAGCCTCTGGCAACGCTTTTTCTTGAATTATGTAGTGCTCACAA  350

seq1  TTCATGCCATTAAGAAGTATGGTATAATTAAAGCAAAGCCTCGTGTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCCATTAAGAAGTATGGTATAATTAAAGCAAAGCCTCGTGTAAAG  400

seq1  TCTGCTGACTATGGCAGAATGCTGACTGAAACACTAACTCATAGAGGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGACTATGGCAGAATGCTGACTGAAACACTAACTCATAGAGGTCA  450

seq1  AATCTCAGGTTATATACTCCTAGTTTGCTCTTTAATTATGTTTACTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGGTTATATACTCCTAGTTTGCTCTTTAATTATGTTTACTCTAT  500

seq1  GGTCTGGTCGGCTTTGAACATGAAAGTTCCCATCATTCCTACTTTTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGTCGGCTTTGAACATGAAAGTTCCCATCATTCCTACTTTTGAGA  550

seq1  TACCTCTGCATAATTAGATCCCAGAATGCTTTAGCTATCATTTCCAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTGCATAATTAGATCCCAGAATGCTTTAGCTATCATTTCCAAGAT  600

seq1  TTCTCAAGAACTTAACCCTTTCCTTCACTGGCCTAGGGCACAACTATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGAACTTAACCCTTTCCTTCACTGGCCTAGGGCACAACTATGGC  650

seq1  ACTATCTGTAGTTTGTTTGGACCAGAGGAATGAGTGTTTCCTTGACACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTGTAGTTTGTTTGGACCAGAGGAATGAGTGTTTCCTTGACACAG  700

seq1  ATCATAAGAGAGATACATGCCATCTACACTTGATCAGACATCAATTTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAGAGAGATACATGCCATCTACACTTGATCAGACATCAATTTAGA  750

seq1  TAGTGTTGCTGTCATTTTACTTTTTGACCTTTCTAACAATTTAGTTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTGCTGTCATTTTACTTTTTGACCTTTCTAACAATTTAGTTCTTT  800

seq1  AATAATTTTACATGTTTATATAATGCATACTGGTTACATCCTCCTTCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTACATGTTTATATAATGCATACTGGTTACATCCTCCTTCTAT  850

seq1  CACCTCACGTCTCACTCCCATCCCTATCACCCTCCCCCACCCCACTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCACGTCTCACTCCCATCCCTATCACCCTCCCCCACCCCACTTCTT  900

seq1  TCTGACCTTTTCTCAAATTTATGGCTTT-GGTTTTATCTTATGAACCATT  949
      |||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  TCTGACCTTTTCTC-AATTTATGGCTTTGGGTTTTATCTTATGAACCATT  949

seq1  TAGTTTAACTAGGGCTGTCCATGTGATGCTGAGACTGCCCATTGGATCCT  999
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAG-TTAACTAGGGCTGTCCATGTGATGCTGAGACTGCCCATTGGATCCT  998

seq1  ACTAAGATTACCA-GGGAATACCTAACATAACTTCTCCTTTCCCTAAATC  1048
      ||| ||||||||| ||||||||||||||| |||||| |||||||||| ||
seq2  ACT-AGATTACCAGGGGAATACCTAACATTACTTCT-CTTTCCCTAATTC  1046

seq1  TGTCAGTAGGAGTGGTGTGGTGGTGA-GAAGGAGGATCCTCTG  1090
      ||||||||||| || ||| || |||| ||||||||||||||||
seq2  TGTCAGTAGGAATGATGT-GTTGTGAGGAAGGAGGATCCTCTG  1088