BAC Information

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BAC

Clone NameB6Ng01-234I16
Chromosome11 (Build37)
Map Location 37,619,347 - 37,771,938
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz2, LOC100039148
Downstream geneLOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234I16.bB6Ng01-234I16.g
ACCGA046278GA046279
length1,0271,172
definitionB6Ng01-234I16.b B6Ng01-234I16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,770,932 - 37,771,938)(37,619,347 - 37,620,531)
sequence
gaattctttgtttagctctgtatcccattttttgtgtctctagctgcata
tgtagcagaggatggcctagttggccatcaatcggagaagaggcccttga
tcttgtgaagattatatgccccagggctaagaagcaggagtaggtaggtt
ggggaacaggtttgggggagggtacaggggactgtcagagaggaaacttg
gaaaggggattgcatttcaaatataaatgaagaaaatatctaataaaaaa
aaagaattgaacactaactccacatataggtagaacacatcaaattcttt
actttgcaagagccttgcttaatctatgctgtgcacttccctgtctccac
attcagttctacacgtccaggagcccatgtggaactctgggtggcttgag
gacctgcatgcagtagggtcactggtgctgtgagcaataattaataatgg
tcttgatcattgtcctaggatggcagtacagctctctcatatatttctta
gtcttttggtattgaaatattattattgatacctcattatctttcctaga
cctctttacctgggaggagaaagcaggcatttcttataatttgagacttc
acagacatctcagagacgttccagtcatctctcagctagagcttggatga
taaggctcaggctggtgagattgctcagaagactaggatatctacctgag
ttcaatccccaggtcctacatgactgaaggagagaactgattctcagttg
tcttccagctcccatgtgtgagcactagcatgcctgacccttcacacatg
ctgcataaatataatacatttcctaatttaccttttctctctccttgtat
ttcatttcagaactgtgaaaaggtagtattttttttaacctcagctaggg
tatttggcccttcagctttgttctactttcctgaaagtcctccacattgg
gttgtcttaagtcatgaataaaaacacacctaaagccttggtttaggtag
agcccaagattccagtgatataaaacc

gaattcattgatcatgactggtttgtctgtttttaatattttttagcaaa
gcatattttagcaaaaatatatttggcaattacacagtcacaagatcatg
taaatggcttcacagctgtcaacacaaaatgccttgagagctttgagggt
aacaaacaaacacaaagagaatatccttgacaatatgaggcagagcactg
tgattggctttttaaggacacttgctacaaagccactacattctaaggtc
catccctaggaaccatactatatgagaaaattcgtttttccaggctatcc
tctgagcctaacatgccactcaaagtaaataaattaagacacaaatatta
aataaatagataaatatgtaaaatgtcaaaattaaaagataagtccctta
catatatgaacaatttttaaaaatatataatgaagttggcacatctttat
cttttgtctattacactactattcactaatgttattaaccactgctatcc
aaactcaatggggaagcatatacagaatggtagtagggcagttagatcat
acatgcatgagaagaaacttggtatgagcaaggttgctgtcactttttaa
gtgagaataataagcagagatatttgccatgtgagtgaatttataattct
tatgctaccataatgagcaactttaattttaaaggtgtttttttcttctt
tgtaatgaaatactgactgaattcttgaaattttgcagaagttggccacc
gtcttcttcattgcaaatgtacaactgtcaggttggacctgtttttaacc
ttgtttttattaatacattccctgtataaagttgaaaaggtgcttactct
ttcattaaatgtgaatttcttatcagccatgtgtgccctagcagcacttc
atggtgagcaaaataactaaaggttggtttggcttaaacatcatattgga
tagctgcatagagaacacaaaccaatgaatgaacagaaccgttacgaagg
aatgtataacatttctctcagagttctgtcgtcttgtctatagtactgca
cagtttacttggttacgatggattcaggcaaatcagcattcctgttgact
ccaatcagctcattcagccaggatatgaacgtcaattctagtttaattgc
ttaaatatgcctagagtgtttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_37770932_37771938
seq2: B6Ng01-234I16.b_46_1072 (reverse)

seq1  GGTTTTATATCACTGGAATCTT-GGCTCTA-CTAA--CCAGGCTT--AGT  44
      |||||||||||||||||||||| ||||||| ||||  | ||||||   ||
seq2  GGTTTTATATCACTGGAATCTTGGGCTCTACCTAAACCAAGGCTTTAGGT  50

seq1  GTGTTTTTA-TCATGACTT-AGAC-ACCCAATGTG--AGAC-TTCAGG-A  87
      ||||||||| ||||||||| |||| ||||||||||   ||| |||||| |
seq2  GTGTTTTTATTCATGACTTAAGACAACCCAATGTGGAGGACTTTCAGGAA  100

seq1  AGTAGAACAAAGCTGA--GGGCAAATA-CCTAGCTGAGGTT-AAAAAAAT  133
      ||||||||||||||||  || |||||| ||||||||||||| ||||||||
seq2  AGTAGAACAAAGCTGAAGGGCCAAATACCCTAGCTGAGGTTAAAAAAAAT  150

seq1  ACTA-CTTTTCACAGTTCTGAAATGAAATACAAGGAGAGAG-AAAGGTAA  181
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACTACCTTTTCACAGTTCTGAAATGAAATACAAGGAGAGAGAAAAGGTAA  200

seq1  ATTAGGAAATGTATTATATTTATGCAGCATGTGTG-AGGGTCAGGCATGC  230
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTAGGAAATGTATTATATTTATGCAGCATGTGTGAAGGGTCAGGCATGC  250

seq1  TAGTGCTCACACATGGGAGCTGGAAGACAACTGAGAATCAGTTCTCTCCT  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTCACACATGGGAGCTGGAAGACAACTGAGAATCAGTTCTCTCCT  300

seq1  TCAGTCATGTAGGACCTGGGGATTGAACTCAGGTAGATATCCTAGTCTTC  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCATGTAGGACCTGGGGATTGAACTCAGGTAGATATCCTAGTCTTC  350

seq1  TGAGCAATCTCACCAGCCTGAGCCTTATCATCCAAGCTCTAGCTGAGAGA  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAATCTCACCAGCCTGAGCCTTATCATCCAAGCTCTAGCTGAGAGA  400

seq1  TGACTGGAACGTCTCTGAGATGTCTGTGAAGTCTCAAATTATAAGAAATG  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGAACGTCTCTGAGATGTCTGTGAAGTCTCAAATTATAAGAAATG  450

seq1  CCTGCTTTCTCCTCCCAGGTAAAGAGGTCTAGGAAAGATAATGAGGTATC  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTCTCCTCCCAGGTAAAGAGGTCTAGGAAAGATAATGAGGTATC  500

seq1  AATAATAATATTTCAATACCAAAAGACTAAGAAATATATGAGAGAGCTGT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATATTTCAATACCAAAAGACTAAGAAATATATGAGAGAGCTGT  550

seq1  ACTGCCATCCTAGGACAATGATCAAGACCATTATTAATTATTGCTCACAG  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCATCCTAGGACAATGATCAAGACCATTATTAATTATTGCTCACAG  600

seq1  CACCAGTGACCCTACTGCATGCAGGTCCTCAAGCCACCCAGAGTTCCACA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTGACCCTACTGCATGCAGGTCCTCAAGCCACCCAGAGTTCCACA  650

seq1  TGGGCTCCTGGACGTGTAGAACTGAATGTGGAGACAGGGAAGTGCACAGC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCCTGGACGTGTAGAACTGAATGTGGAGACAGGGAAGTGCACAGC  700

seq1  ATAGATTAAGCAAGGCTCTTGCAAAGTAAAGAATTTGATGTGTTCTACCT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTAAGCAAGGCTCTTGCAAAGTAAAGAATTTGATGTGTTCTACCT  750

seq1  ATATGTGGAGTTAGTGTTCAATTCTTTTTTTTTATTAGATATTTTCTTCA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGGAGTTAGTGTTCAATTCTTTTTTTTTATTAGATATTTTCTTCA  800

seq1  TTTATATTTGAAATGCAATCCCCTTTCCAAGTTTCCTCTCTGACAGTCCC  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTGAAATGCAATCCCCTTTCCAAGTTTCCTCTCTGACAGTCCC  850

seq1  CTGTACCCTCCCCCAAACCTGTTCCCCAACCTACCTACTCCTGCTTCTTA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCCTCCCCCAAACCTGTTCCCCAACCTACCTACTCCTGCTTCTTA  900

seq1  GCCCTGGGGCATATAATCTTCACAAGATCAAGGGCCTCTTCTCCGATTGA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGGGCATATAATCTTCACAAGATCAAGGGCCTCTTCTCCGATTGA  950

seq1  TGGCCAACTAGGCCATCCTCTGCTACATATGCAGCTAGAGACACAAAAAA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAACTAGGCCATCCTCTGCTACATATGCAGCTAGAGACACAAAAAA  1000

seq1  TGGGATACAGAGCTAAACAAAGAATTC  1007
      |||||||||||||||||||||||||||
seq2  TGGGATACAGAGCTAAACAAAGAATTC  1027


seq1: chr11_37619347_37620531
seq2: B6Ng01-234I16.g_63_1234

seq1  GAATTCATTGATCATGACTGGTTTGTCTGTTTTTAATATTTTTTAGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGATCATGACTGGTTTGTCTGTTTTTAATATTTTTTAGCAAA  50

seq1  GCATATTTTAGCAAAAATATATTTGGCAATTACACAGTCACAAGATCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTTAGCAAAAATATATTTGGCAATTACACAGTCACAAGATCATG  100

seq1  TAAATGGCTTCACAGCTGTCAACACAAAATGCCTTGAGAGCTTTGAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGCTTCACAGCTGTCAACACAAAATGCCTTGAGAGCTTTGAGGGT  150

seq1  AACAAACAAACACAAAGAGAATATCCTTGACAATATGAGGCAGAGCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACACAAAGAGAATATCCTTGACAATATGAGGCAGAGCACTG  200

seq1  TGATTGGCTTTTTAAGGACACTTGCTACAAAGCCACTACATTCTAAGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGCTTTTTAAGGACACTTGCTACAAAGCCACTACATTCTAAGGTC  250

seq1  CATCCCTAGGAACCATACTATATGAGAAAATTCGTTTTTCCAGGCTATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTAGGAACCATACTATATGAGAAAATTCGTTTTTCCAGGCTATCC  300

seq1  TCTGAGCCTAACATGCCACTCAAAGTAAATAAATTAAGACACAAATATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCCTAACATGCCACTCAAAGTAAATAAATTAAGACACAAATATTA  350

seq1  AATAAATAGATAAATATGTAAAATGTCAAAATTAAAAGATAAGTCCCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAGATAAATATGTAAAATGTCAAAATTAAAAGATAAGTCCCTTA  400

seq1  CATATATGAACAATTTTTAAAAATATATAATGAAGTTGGCACATCTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGAACAATTTTTAAAAATATATAATGAAGTTGGCACATCTTTAT  450

seq1  CTTTTGTCTATTACACTACTATTCACTAATGTTATTAACCACTGCTATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCTATTACACTACTATTCACTAATGTTATTAACCACTGCTATCC  500

seq1  AAACTCAATGGGGAAGCATATACAGAATGGTAGTAGGGCAGTTAGATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAATGGGGAAGCATATACAGAATGGTAGTAGGGCAGTTAGATCAT  550

seq1  ACATGCATGAGAAGAAACTTGGTATGAGCAAGGTTGCTGTCACTTTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATGAGAAGAAACTTGGTATGAGCAAGGTTGCTGTCACTTTTTAA  600

seq1  GTGAGAATAATAAGCAGAGATATTTGCCATGTGAGTGAATTTATAATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAATAATAAGCAGAGATATTTGCCATGTGAGTGAATTTATAATTCT  650

seq1  TATGCTACCATAATGAGCAACTTTAATTTTAAAGGTGTTTTTTTCTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTACCATAATGAGCAACTTTAATTTTAAAGGTGTTTTTTTCTTCTT  700

seq1  TGTAATGAAATACTGACTGAATTCTTGAAATTTTGCAGAAGTTGGCCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGAAATACTGACTGAATTCTTGAAATTTTGCAGAAGTTGGCCACC  750

seq1  GTCTTCTTCATTGCAAATGTACAACTGTCAGGTTGGACCTGTTTTTAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTCATTGCAAATGTACAACTGTCAGGTTGGACCTGTTTTTAACC  800

seq1  TTGTTTTTATTAATACATTCCCTGTATAAAGTTGAAAAGGTGCTTACTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTATTAATACATTCCCTGTATAAAGTTGAAAAGGTGCTTACTCT  850

seq1  TTCATTAAATGTGAATTTCTTATCAGCCATGTGTGCCCTAGCAGCACTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAAATGTGAATTTCTTATCAGCCATGTGTGCCCTAGCAGCACTTC  900

seq1  ATGGTGAGCAAAATAACTAAA-GTTGGTTTGGCTTAAACATCATATTGGA  949
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGGTGAGCAAAATAACTAAAGGTTGGTTTGGCTTAAACATCATATTGGA  950

seq1  TAGCTGCATAGAGAACACAAACCAAATGAATGAACAGAACCGTTACGAAG  999
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAGCTGCATAGAGAACACAAACC-AATGAATGAACAGAACCGTTACGAAG  999

seq1  GAATGTATAAACAATTTCTCTCAAGAGTTCTGTCGTCTTGTTCTATTAGT  1049
      ||||||||||   ||||||||| ||||||||||||||||| |||| ||||
seq2  GAATGTATAA--CATTTCTCTC-AGAGTTCTGTCGTCTTG-TCTA-TAGT  1044

seq1  ACTGCACAGTTTTACTTGGTTACGGTTGGGTTTCA-GCCAATCAGCATTT  1098
      ||||||||| |||||||||||||| |  || |||| || |||||||||| 
seq2  ACTGCACAG-TTTACTTGGTTACGAT--GGATTCAGGCAAATCAGCATT-  1090

seq1  CCCTGTTTGGAATTCCAATCAGCTACAATTCAGCCAGGATTATGACAGTT  1148
       ||||||    | |||||||||||   |||||||||||| |||||  |  
seq2  -CCTGTT---GACTCCAATCAGCT--CATTCAGCCAGGA-TATGAACG--  1131

seq1  TCCAATCTAGTTTTATTGCTT-AATATGC---TAGTGTTTC  1185
      || | |||||||| ||||||| |||||||    ||||||||
seq2  TCAATTCTAGTTTAATTGCTTAAATATGCCTAGAGTGTTTC  1172


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