BAC Information

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BAC

Clone NameB6Ng01-234I24
Chromosome11 (Build37)
Map Location 106,095,974 - 106,212,812
singlet/doubletdoublet
Overlap geneDdx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a
Upstream geneTlk2, Mrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik
Downstream gene2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234I24.bB6Ng01-234I24.g
ACCGA046293GA046294
length2901,099
definitionB6Ng01-234I24.b B6Ng01-234I24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,212,523 - 106,212,812)(106,095,974 - 106,097,059)
sequence
agatgaggctagtttcctcgagggctggactagacccagactgtggtgtt
gggctattgtggtccctctgggctccagtgtgggacagagggcagcacca
gaatcagggtattgctgccaagatggcttcaggctgggtgggtccctctg
aggtcatctggcaggccagcattgcctatatgataagatgcgagctcttg
tatagggtcagggtaaagtatatatgacagactgagtgtctctgtgaggg
gctgcagctcagacctgtgtgtgtatgtgtgtgtgtgtgt
gaattcttaccatggtttcctttgcatgaggccatcgtgttcagggtttg
accctttttggtgtttttgcttacacacctgcttttcactctttattcta
gctaaagtgcttggtctgagtgtgcactgttgaactgtaaatgctgttta
agtgaaagtaccggtcttcctgggaattgtctttgtctctaggtctctgg
tgctgcacctcccagaccaggaagtagctttgctcattttgggtttgatg
aacaacttatgcaccagattaggaaatctgagtacacacagccgacccca
atacagtgtcaggtgcgtacagcatggtgggtggggatggaaagctctgg
aacttctaaagatgggagcgaaaggagacctttggaaaaggttttttgta
cctgctgaatccattgaaaatgtgttgtgaaggagatactttcttttcta
aacctcacagaaaagatttgtccatggatatactttgtgctttcaatgac
tagaatccctttgtaaatgacatgaaagtttttcatttattgctgtgacg
gatagcttctgtttgccattcaaatgtggaatttatgtattcctttacaa
aaacagaaagagaaattcctacatataaatgaagtggcctatttattttc
caggagagaacattagaagccctgtacaaaatttttaataactcccttta
tacatcaagtctttattttgatatatcaatacaaatgggagtcatgattt
tttttttataaatgatgccttcatgaaggtaatatttcctttaaatcagg
ctcatgggaatgtcaggattcagctaatgttcatggcccagaatattttt
gttccattggaaatgaatgtcatttgtagtaattttccccaagacgttag
ttcaatctttagaatgaagtgaatataccttttcctttcttcttctctag
gtgtacctgtagcactaagtggggagagacatgattggtattgctaaaac
cagccagtgggaaaactgccagccctttattttgggcccatggtgattcc
atataatggaatccagaagggattggaacaaggtgaattggactaattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106212523_106212812
seq2: B6Ng01-234I24.b_53_342 (reverse)

seq1  ACACACACACACACATACACACACAGGTCTGAGCTGCAGCCCCTCACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACATACACACACAGGTCTGAGCTGCAGCCCCTCACAGA  50

seq1  GACACTCAGTCTGTCATATATACTTTACCCTGACCCTATACAAGAGCTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCAGTCTGTCATATATACTTTACCCTGACCCTATACAAGAGCTCG  100

seq1  CATCTTATCATATAGGCAATGCTGGCCTGCCAGATGACCTCAGAGGGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATCATATAGGCAATGCTGGCCTGCCAGATGACCTCAGAGGGACC  150

seq1  CACCCAGCCTGAAGCCATCTTGGCAGCAATACCCTGATTCTGGTGCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGCCTGAAGCCATCTTGGCAGCAATACCCTGATTCTGGTGCTGCC  200

seq1  CTCTGTCCCACACTGGAGCCCAGAGGGACCACAATAGCCCAACACCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCCCACACTGGAGCCCAGAGGGACCACAATAGCCCAACACCACAG  250

seq1  TCTGGGTCTAGTCCAGCCCTCGAGGAAACTAGCCTCATCT  290
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCTAGTCCAGCCCTCGAGGAAACTAGCCTCATCT  290

seq1: chr11_106095974_106097059
seq2: B6Ng01-234I24.g_67_1165

seq1  GAATTCTTACCATGGTTTCCTTTGCATGAGGCCATCGTGTTCAGGGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACCATGGTTTCCTTTGCATGAGGCCATCGTGTTCAGGGTTTG  50

seq1  ACCCTTTTTGGTGTTTTTGCTTACACACCTGCTTTTCACTCTTTATTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTTTGGTGTTTTTGCTTACACACCTGCTTTTCACTCTTTATTCTA  100

seq1  GCTAAAGTGCTTGGTCTGAGTGTGCACTGTTGAACTGTAAATGCTGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGTGCTTGGTCTGAGTGTGCACTGTTGAACTGTAAATGCTGTTTA  150

seq1  AGTGAAAGTACCGGTCTTCCTGGGAATTGTCTTTGTCTCTAGGTCTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAGTACCGGTCTTCCTGGGAATTGTCTTTGTCTCTAGGTCTCTGG  200

seq1  TGCTGCACCTCCCAGACCAGGAAGTAGCTTTGCTCATTTTGGGTTTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCACCTCCCAGACCAGGAAGTAGCTTTGCTCATTTTGGGTTTGATG  250

seq1  AACAACTTATGCACCAGATTAGGAAATCTGAGTACACACAGCCGACCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTATGCACCAGATTAGGAAATCTGAGTACACACAGCCGACCCCA  300

seq1  ATACAGTGTCAGGTGCGTACAGCATGGTGGGTGGGGATGGAAAGCTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTGTCAGGTGCGTACAGCATGGTGGGTGGGGATGGAAAGCTCTGG  350

seq1  AACTTCTAAAGATGGGAGCGAAAGGAGACCTTTGGAAAAGGTTTTTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTAAAGATGGGAGCGAAAGGAGACCTTTGGAAAAGGTTTTTTGTA  400

seq1  CCTGCTGAATCCATTGAAAATGTGTTGTGAAGGAGATACTTTCTTTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGAATCCATTGAAAATGTGTTGTGAAGGAGATACTTTCTTTTCTA  450

seq1  AACCTCACAGAAAAGATTTGTCCATGGATATACTTTGTGCTTTCAATGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCACAGAAAAGATTTGTCCATGGATATACTTTGTGCTTTCAATGAC  500

seq1  TAGAATCCCTTTGTAAATGACATGAAAGTTTTTCATTTATTGCTGTGACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCCCTTTGTAAATGACATGAAAGTTTTTCATTTATTGCTGTGACG  550

seq1  GATAGCTTCTGTTTGCCATTCAAATGTGGAATTTATGTATTCCTTTACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTTCTGTTTGCCATTCAAATGTGGAATTTATGTATTCCTTTACAA  600

seq1  AAACAGAAAGAGAAATTCCTACATATAAATGAAGTGGCCTATTTATTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAAGAGAAATTCCTACATATAAATGAAGTGGCCTATTTATTTTC  650

seq1  CAGGAGAGAACATTAGAAGCCCTGTACAAAATTTTTAATAACTCCCTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGAACATTAGAAGCCCTGTACAAAATTTTTAATAACTCCCTTTA  700

seq1  TACATCAAGTCTTTATTTTGATATATCAATACAAATGGGAGTCATGA-TT  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TACATCAAGTCTTTATTTTGATATATCAATACAAATGGGAGTCATGATTT  750

seq1  TTTTTTTATAAATGATGCCTTCATGAAGGTAATATTTCCTTTAAATCAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATAAATGATGCCTTCATGAAGGTAATATTTCCTTTAAATCAGG  800

seq1  CTCATGGGAATGTCAGGATTCAGCTAATGTTCATGGCCCAGAATATTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGGAATGTCAGGATTCAGCTAATGTTCATGGCCCAGAATATTTTT  850

seq1  GTTCCATTGGAAATGAATGTCATTTGTAGTAATTTTCCCCAAGACGTTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATTGGAAATGAATGTCATTTGTAGTAATTTTCCCCAAGACGTTAG  900

seq1  TTC-ATCTTTAGAATTGAGTGAATATACC-TTTCCTTTCTTCTTCTCTAG  947
      ||| |||||||||||  |||||||||||| ||||||||||||||||||| 
seq2  TTCAATCTTTAGAATGAAGTGAATATACCTTTTCCTTTCTTCTTCTCTA-  949

seq1  GGTGTACCTGTAGCACTAAGT-GGGAGAGACATGATTGGTATTGCTAAAA  996
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGTGTACCTGTAGCACTAAGTGGGGAGAGACATGATTGGTATTGCTAAAA  999

seq1  -CAGGCAGTGGGAAAACTG-CAG-CCTTTATTT--GGCCCATGTTGATT-  1040
       ||| |||||||||||||| ||| |||||||||  |||||||| ||||| 
seq2  CCAGCCAGTGGGAAAACTGCCAGCCCTTTATTTTGGGCCCATGGTGATTC  1049

seq1  CATATAATGGA--TCAGAAGGAATTGGAACCAGGTGA--TGGACCAATTG  1086
      |||||||||||   ||||||| |||||||| ||||||  ||||| |||||
seq2  CATATAATGGAATCCAGAAGGGATTGGAACAAGGTGAATTGGACTAATTG  1099