BAC Information

Click to search

BAC

Clone NameB6Ng01-235O20
Chromosome11 (Build37)
Map Location 34,914,821 - 34,915,664
singlet/doubletsinglet
Overlap genenone
Upstream geneLcp2, Foxi1, Dock2, EG574403, Dock2, Ccdc99, LOC100038976
Downstream geneSlit3, LOC100039006, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532, Odz2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235O20.bB6Ng01-235O20.g
ACCGA047280GA047281
length975848
definitionB6Ng01-235O20.b B6Ng01-235O20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgagaaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaatgaccatgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcatgtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctag
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgttccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttatagtagccagaaactggaaagaacccagat
gtccctcaacagaggaattgatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaataaatttatgaaattcctaggcaa
atggatggacctggaaggcatcatcctgagtgaggtaacccaatcacaaa
aaactcatatgatatgtactcactgataagtggatattagcccagaaact
tagaatacacaagatacaagatacaatgtgcaaaacacatgaaactcaag
aagaatgaagactcttgtgaggctatgccagggcctaccaaacacagaag
tggatgctcacagtcagctattggatggatcacaggacccccaatggagg
agctagagaaagtacccaaggagctaaaggggtctgcaaccctataggtg
gaacaacaatatgaactaaccagtatccccccagagctcatgtctctatc
tgcatatgtatcagaagatggcctagtcggccatcatttggaaagagagg
cccattggacacgcaaacttttatatgcctcagcataggggaacgccagg
gtcaagaaagtggggagttggtggg
gaattctcaaaaatgtccctggttgtttctccaggcctcggtggtatcaa
ggttttgacacccagggttgtgaattgtaaaattgtgtttgtagttgaca
caattatgctctaagtaactgagtctgtgtggctatatgttccatgctct
tgcatctgaagggggactcattccctcacctgtgcttagagcctatcccc
attcaagcaggagttctcatgggctagtgtcttagaccctcagaaatatc
attgccccaaatggcccagtatctcatcatctctgcctgtccaagttagg
gttctcattgctgtagtgaagcaccatggccaaaacaacttggggaggaa
agggtttagttggcgtacgtagtccaagtcactggaaataagtcaaggca
ggaactcaacctgtgtggcaacctagaggcagaagcccatgcagaggcca
tggaggatgctgcttactggcttgcttctcatggcttgctcagcctgctt
tcttatagaacccaggccaaccagctcaggggtggcaccacccacagtgg
gctgtgccgtgcagcttcttgcctgtagcctcatcttatggaggcattct
ctcaaatgagttcccctcctctctgatggatctagcttgtgttaagttga
cagaaaactagccaggatacttttcaaatctccaagtatttaagtttgag
ataaattttctaaacatacctcaatcaagattatctaagcccatatctaa
tgcataaggaaccacagtggctattactttcatattttaataggaataat
gataaggttccaccattaacccttgctctggtaggacaatactatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_34914821_34915664
seq2: B6Ng01-235O20.g_69_916 (reverse)

seq1  CATATAGTATTGTCCTACCAGAGCA--GGGTAATGGTTGGAACCTTATCA  48
      |||||||||||||||||||||||||  || |||||| |||||||||||||
seq2  CATATAGTATTGTCCTACCAGAGCAAGGGTTAATGG-TGGAACCTTATCA  49

seq1  TTATTCCTATTAAAATCTG-AAGTAATAGCCACTGTGGTTCCTTCTGCAT  97
      |||||||||||||||| || |||||||||||||||||||||||| |||||
seq2  TTATTCCTATTAAAATATGAAAGTAATAGCCACTGTGGTTCCTTATGCAT  99

seq1  TAGATAT-GGCTTAGATAATCTTGATTGAGGTATGTTTAGAAAATTTATC  146
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATGGGCTTAGATAATCTTGATTGAGGTATGTTTAGAAAATTTATC  149

seq1  TCAAACTTAAATACTTGGAGATTTGAAAAGTATCCTGGCTAGTTTTCTGT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTAAATACTTGGAGATTTGAAAAGTATCCTGGCTAGTTTTCTGT  199

seq1  CAACTTAACACAAGCTAGATCCATCAGAGAGGA-GGGAACTCATTTGAGA  245
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAACTTAACACAAGCTAGATCCATCAGAGAGGAGGGGAACTCATTTGAGA  249

seq1  GAATGCCTCCATAAGATGAGGCTACAGGCAAGAAGCTGCACGGCACAGCC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCTCCATAAGATGAGGCTACAGGCAAGAAGCTGCACGGCACAGCC  299

seq1  CACTGTGGGTGGTGCCACCCCTGAGCTGGTTGGCCTGGGTTCTATAAGAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGGTGGTGCCACCCCTGAGCTGGTTGGCCTGGGTTCTATAAGAA  349

seq1  AGCAGGCTGAGCAAGCCATGAGAAGCAAGCCAGTAAGCAGCATCCTCCAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTGAGCAAGCCATGAGAAGCAAGCCAGTAAGCAGCATCCTCCAT  399

seq1  GGCCTCTGCATGGGCTTCTGCCTCTAGGTTGCCACACAGGTTGAGTTCCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGCATGGGCTTCTGCCTCTAGGTTGCCACACAGGTTGAGTTCCT  449

seq1  GCCTTGACTTATTTCCAGTGACTTGGACTACGTACGCCAACTAAACCCTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGACTTATTTCCAGTGACTTGGACTACGTACGCCAACTAAACCCTT  499

seq1  TCCTCCCCAAGTTGTTTTGGCCATGGTGCTTCACTACAGCAATGAGAACC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCAAGTTGTTTTGGCCATGGTGCTTCACTACAGCAATGAGAACC  549

seq1  CTAACTTGGACAGGCAGAGATGATGAGATACTGGGCCATTTGGGGCAATG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTGGACAGGCAGAGATGATGAGATACTGGGCCATTTGGGGCAATG  599

seq1  ATATTTCTGAGGGTCTAAGACACTAGCCCATGAGAACTCCTGCTTGAATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTGAGGGTCTAAGACACTAGCCCATGAGAACTCCTGCTTGAATG  649

seq1  GGGATAGGCTCTAAGCACAGGTGAGGGAATGAGTCCCCCTTCAGATGCAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGGCTCTAAGCACAGGTGAGGGAATGAGTCCCCCTTCAGATGCAA  699

seq1  GAGCATGGAACATATAGCCACACAGACTCAGTTACTTAGAGCATAATTGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGGAACATATAGCCACACAGACTCAGTTACTTAGAGCATAATTGT  749

seq1  GTCAACTACAAACACAATTTTACAATTCACAACCCTGGGTGTCAAAACCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTACAAACACAATTTTACAATTCACAACCCTGGGTGTCAAAACCT  799

seq1  TGATACCACCGAGGCCTGGAGAAACAACCAGGGACATTTTTGAGAATTC  844
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCACCGAGGCCTGGAGAAACAACCAGGGACATTTTTGAGAATTC  848