BAC Information

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BAC

Clone NameB6Ng01-236B19
Chromosome11 (Build37)
Map Location 110,982,238 - 111,109,985
singlet/doubletdoublet
Overlap genenone
Upstream geneAbca9, Abca6, Abca5, Map2k6, LOC100041523, Kcnj16, Kcnj2
Downstream geneLOC667003, LOC100041539, LOC100041559, EG629966, LOC629967, LOC100041589, LOC100043020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236B19.bB6Ng01-236B19.g
ACCGA047410GA047411
length1,1141,069
definitionB6Ng01-236B19.b B6Ng01-236B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,108,874 - 111,109,985)(110,982,238 - 110,983,296)
sequence
gaattcagctttcatttccaagtgcatgctcttctgttgtaacccacatg
catgttttttagggataggtggttgattttcggctcacggatcatttggt
tcaccatataacaggtattatattacagtagttacaatagtgagatagag
gtatatgtggcctgtatgcatgaatgatgaaataatcaggagatatgaat
gagtgcaatgtaagcaagggtgatatcatctgtaccataaatggcaagtc
atagcagaggttcagaagtcatttccaaggcctggagcggggccccacag
agtcaagaaaatggcatggcagttaatagcaacagaatggatcagagtac
caagagaatgcagtgtgggagtgtgtgcagtagaggttgaggttgagaaa
tgacaggagctggaccaaagagatggtagctgagagtctggtttgctgct
agtgcttctatcttgttctgataacagtgtcagtgaaggcatggagcagc
atcagccgactcacaactgggccaattctatatctgcagtgaggaccttg
caagggctccgcaggaagttgtcatcacatagtgggagttggtgggagag
cggaagtggggtcttagcgaccttaagtaaatggggctctacctttgtgc
ggactctcagcactctctctaactttttggtttgtgataggagcagctct
ctctgctactcatttctgctcatttgttttctggcatcctaaaataaggg
gattattcaatcatggattggaaacatccattcatgatttacaataaact
tctcttaataaattaacccaccatgatttttttgttacaatgacagaagt
gtatcattgtgtatcactctgcctggaataggagatagactagaaaacat
tgcagctatctgtaaaaatgccacaggttggtactacttgtagttaatgg
gcaagatggtagaaattaagcgttgcggttgaaagctgtctcatataccg
ttttagcagactgcccttaagggagaaaggatgtatgaaaaaaaatgttt
ttgagggaaccaggtttctggctagtcattgccattagaacattgaacca
ggaggtgtttcgta

gaattcacaccaaactttagtaatatgaacacgtaatgcatcaatagaca
caccatcatttatttatggcaacaggccgtgagcagttgtacttggtgac
atagagaattatcctgatcttctttacaatcaacagtgcagagcgcatcc
atctcgtccttcctgccagccctggagaatacttatccaccatccagttt
tcaatcacttgttataagcactagttttgagcactaatagtgatatcaat
ctccttaaagcaatagaatattttagagggacagaggcaaaaaaaaaaaa
aattagccacagactgtaacttgaaactacccccagcaacaggagtagct
cttggctcaaatggaccggattctaaatcttctgcaacctctgccctcag
ctacaagtagtttaccagaaactaatagactttaaatgtcatgacattta
atttttaagtggaaggttgcttatttcctcccaagaattttaaaagagca
aaagtaaaacaaaccaaatcaaaataaaaacaaacctctctctattgtaa
atataaacatcattttatcttgctcatcaaagaccttgctcttctcatcc
acacaaaagaaaaaaaaaaagaaagtcaaaagctcaattcataggacaaa
gaagcaatgagaatacttaccacatgctggccccggtaggggtcgtgaga
gcagaacagcatattttacatagtcaaatgaacatcttaaacatttgcaa
agatgtggccattccttttcctgggagtaagaccttctgagagggctgca
caggaggaacacttatatttctgattctctgccaggagaaagcctgctgg
gccagtttatggagcctgagcttgaataggttatttctgctgcaaaccag
agtacccacttctgatgcagtaactttcccatttggcaagtacagcgcgc
tgcgcgttgatttaccgagttgatattaacagaacgcgttagacaggaga
acgacaaagtattgaatagatgtgtctaaaggagttcttctgaatagaag
tgttcacattgagaagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_111108874_111109985
seq2: B6Ng01-236B19.b_44_1157 (reverse)

seq1  TACGAAACACCTCCTGG-TCAATGTTCT-ATGCAAATGAACTAAGCCAGA  48
      ||||||||||||||||| |||||||||| |||  |||| ||| |||||||
seq2  TACGAAACACCTCCTGGTTCAATGTTCTAATGGCAATG-ACT-AGCCAGA  48

seq1  AACCT-GTTCCCTCAAAAACATTTTTTTTCATACCATCCTTTCTCCCTTT  97
      ||||| ||||||||||||||||||||||||||| ||||||||||||||| 
seq2  AACCTGGTTCCCTCAAAAACATTTTTTTTCATA-CATCCTTTCTCCCTTA  97

seq1  AGGGCAGTTCTGCTAAAACGGTATATGAGACAGCTTTCAAACGCAACGCT  147
      ||||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  AGGGCAG-TCTGCTAAAACGGTATATGAGACAGCTTTCAACCGCAACGCT  146

seq1  TAATTTCTACCATCTTG-CCATTAACTACAAGTAGTACCAACCTGTGGCA  196
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAATTTCTACCATCTTGCCCATTAACTACAAGTAGTACCAACCTGTGGCA  196

seq1  TTTTTACAGATAGCTGCAATGTTTTCTAGTCTATCTCCTATTCCAGGCAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACAGATAGCTGCAATGTTTTCTAGTCTATCTCCTATTCCAGGCAG  246

seq1  AGTGATACACAATGATACACTTCTGTCATTGTAACAAAAAAATCATGGT-  295
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTGATACACAATGATACACTTCTGTCATTGTAACAAAAAAATCATGGTG  296

seq1  GGTTAATTTATTAAGAGAAGTTTATTGTAAATCATGAATGGATG-TTCCA  344
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGTTAATTTATTAAGAGAAGTTTATTGTAAATCATGAATGGATGTTTCCA  346

seq1  ATCCATGATTGAATAATCCCCTTATTTTAGGATGCCAGAAAACAAATGAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGATTGAATAATCCCCTTATTTTAGGATGCCAGAAAACAAATGAG  396

seq1  CAGAAATGAGTAGCAGAGAGAGCTGCTCCTATCACAAACCAAAAAGTTAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGAGTAGCAGAGAGAGCTGCTCCTATCACAAACCAAAAAGTTAG  446

seq1  AGAGAGTGCTGAGAGTCCGCACAAAGGTAGAGCCCCATTTACTTAAGGTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTGCTGAGAGTCCGCACAAAGGTAGAGCCCCATTTACTTAAGGTC  496

seq1  GCTAAGACCCCACTTCCGCTCTCCCACCAACTCCCACTATGTGATGACAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGACCCCACTTCCGCTCTCCCACCAACTCCCACTATGTGATGACAA  546

seq1  CTTCCTGCGGAGCCCTTGCAAGGTCCTCACTGCAGATATAGAATTGGCCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGCGGAGCCCTTGCAAGGTCCTCACTGCAGATATAGAATTGGCCC  596

seq1  AGTTGTGAGTCGGCTGATGCTGCTCCATGCCTTCACTGACACTGTTATCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGAGTCGGCTGATGCTGCTCCATGCCTTCACTGACACTGTTATCA  646

seq1  GAACAAGATAGAAGCACTAGCAGCAAACCAGACTCTCAGCTACCATCTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGATAGAAGCACTAGCAGCAAACCAGACTCTCAGCTACCATCTCT  696

seq1  TTGGTCCAGCTCCTGTCATTTCTCAACCTCAACCTCTACTGCACACACTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCAGCTCCTGTCATTTCTCAACCTCAACCTCTACTGCACACACTC  746

seq1  CCACACTGCATTCTCTTGGTACTCTGATCCATTCTGTTGCTATTAACTGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTGCATTCTCTTGGTACTCTGATCCATTCTGTTGCTATTAACTGC  796

seq1  CATGCCATTTTCTTGACTCTGTGGGGCCCCGCTCCAGGCCTTGGAAATGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCATTTTCTTGACTCTGTGGGGCCCCGCTCCAGGCCTTGGAAATGA  846

seq1  CTTCTGAACCTCTGCTATGACTTGCCATTTATGGTACAGATGATATCACC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAACCTCTGCTATGACTTGCCATTTATGGTACAGATGATATCACC  896

seq1  CTTGCTTACATTGCACTCATTCATATCTCCTGATTATTTCATCATTCATG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTACATTGCACTCATTCATATCTCCTGATTATTTCATCATTCATG  946

seq1  CATACAGGCCACATATACCTCTATCTCACTATTGTAACTACTGTAATATA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGGCCACATATACCTCTATCTCACTATTGTAACTACTGTAATATA  996

seq1  ATACCTGTTATATGGTGAACCAAATGATCCGTGAGCCGAAAATCAACCAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGTTATATGGTGAACCAAATGATCCGTGAGCCGAAAATCAACCAC  1046

seq1  CTATCCCTAAAAAACATGCATGTGGGTTACAACAGAAGAGCATGCACTTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCTAAAAAACATGCATGTGGGTTACAACAGAAGAGCATGCACTTG  1096

seq1  GAAATGAAAGCTGAATTC  1112
      ||||||||||||||||||
seq2  GAAATGAAAGCTGAATTC  1114


seq1: chr11_110982238_110983296
seq2: B6Ng01-236B19.g_65_1133

seq1  GAATTCACACCAAACTTTAGTAATATGAACACGTAATGCATCAATAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACCAAACTTTAGTAATATGAACACGTAATGCATCAATAGACA  50

seq1  CACCATCATTTATTTATGGCAACAGGCCGTGAGCAGTTGTACTTGGTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCATTTATTTATGGCAACAGGCCGTGAGCAGTTGTACTTGGTGAC  100

seq1  ATAGAGAATTATCCTGATCTTCTTTACAATCAACAGTGCAGAGCGCATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAATTATCCTGATCTTCTTTACAATCAACAGTGCAGAGCGCATCC  150

seq1  ATCTCGTCCTTCCTGCCAGCCCTGGAGAATACTTATCCACCATCCAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCGTCCTTCCTGCCAGCCCTGGAGAATACTTATCCACCATCCAGTTT  200

seq1  TCAATCACTTGTTATAAGCACTAGTTTTGAGCACTAATAGTGATATCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCACTTGTTATAAGCACTAGTTTTGAGCACTAATAGTGATATCAAT  250

seq1  CTCCTTAAAGCAATAGAATATTTTAGAGGGACAGAGGCAAAAAAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAAAGCAATAGAATATTTTAGAGGGACAGAGGCAAAAAAAAAAAA  300

seq1  AATTAGCCACAGACTGTAACTTGAAACTACCCCCAGCAACAGGAGTAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCCACAGACTGTAACTTGAAACTACCCCCAGCAACAGGAGTAGCT  350

seq1  CTTGGCTCAAATGGACCGGATTCTAAATCTTCTGCAACCTCTGCCCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCAAATGGACCGGATTCTAAATCTTCTGCAACCTCTGCCCTCAG  400

seq1  CTACAAGTAGTTTACCAGAAACTAATAGACTTTAAATGTCATGACATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGTAGTTTACCAGAAACTAATAGACTTTAAATGTCATGACATTTA  450

seq1  ATTTTTAAGTGGAAGGTTGCTTATTTCCTCCCAAGAATTTTAAAAGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAGTGGAAGGTTGCTTATTTCCTCCCAAGAATTTTAAAAGAGCA  500

seq1  AAAGTAAAACAAACCAAATCAAAATAAAAACAAACCTCTCTCTATTGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAACAAACCAAATCAAAATAAAAACAAACCTCTCTCTATTGTAA  550

seq1  ATATAAACATCATTTTATCTTGCTCATCAAAGACCTTGCTCTTCTCATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAACATCATTTTATCTTGCTCATCAAAGACCTTGCTCTTCTCATCC  600

seq1  ACACAAAAGAAAAAAAAAAAGAAAGTCAAAAGCTCAATTCATAGGACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAAGAAAAAAAAAAAGAAAGTCAAAAGCTCAATTCATAGGACAAA  650

seq1  GAAGCAATGAGAATACTTACCACATGCTGGCCCCGGTAGGGGTCGTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAATGAGAATACTTACCACATGCTGGCCCCGGTAGGGGTCGTGAGA  700

seq1  GCAGAACAGCATATTTTACATAGTCAAATGAACATCTTAAACATTTGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACAGCATATTTTACATAGTCAAATGAACATCTTAAACATTTGCAA  750

seq1  AGATGTGGCCATTCC-TTTCCTGGGAGTAAGACCTTCTGAGAGGGCTGCA  799
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGATGTGGCCATTCCTTTTCCTGGGAGTAAGACCTTCTGAGAGGGCTGCA  800

seq1  CAGGAGGAACACTTATATTTCTGATTCTCTGCCAGGAGAAAGCCTGCTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGAACACTTATATTTCTGATTCTCTGCCAGGAGAAAGCCTGCTGG  850

seq1  GCCAGTTTATGGAGCCTGAGCTTGAATAGGTTA-TTCTGCTGCAAACCAG  898
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCCAGTTTATGGAGCCTGAGCTTGAATAGGTTATTTCTGCTGCAAACCAG  900

seq1  AGTACCCACTTCTGATGCAGTAAC-TTCCCATTTGGCAAGTACAGCGCGC  947
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTACCCACTTCTGATGCAGTAACTTTCCCATTTGGCAAGTACAGCGCGC  950

seq1  TGCGCGTTGATTTACCGAGTTGATATTAACAG-ACGCG-TAGACAGGAGA  995
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  TGCGCGTTGATTTACCGAGTTGATATTAACAGAACGCGTTAGACAGGAGA  1000

seq1  ACGAACAAAGTATTG-ATAGATGTGTCT-AAGGAG-TCTCCTG-ATAG-A  1040
      ||| ||||||||||| |||||||||||| |||||| ||| ||| |||| |
seq2  ACG-ACAAAGTATTGAATAGATGTGTCTAAAGGAGTTCTTCTGAATAGAA  1049

seq1  GTGTTCACATTGAGAGGGG-  1059
      ||||||||||||||| ||| 
seq2  GTGTTCACATTGAGAAGGGG  1069


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