BAC Information

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BAC

Clone NameB6Ng01-236I16
Chromosome11 (Build37)
Map Location 26,958,265 - 26,959,464
singlet/doubletsinglet
Overlap genenone
Upstream gene5730522E02Rik, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
Downstream geneLOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236I16.bB6Ng01-236I16.g
ACCGA047734GA047735
length1,2051,019
definitionB6Ng01-236I16.b B6Ng01-236I16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcagctgctgagaagtccctgtcccaactcagcccccaacact
gagtatctctctcacagttttgatcccagactcccagaataatgagaggg
gcctgagaggccatactctctttaatgccatcagtaaagttttctacacc
ctgaaaagataaaaacaaaaacagggcctgatacatgtaattagaaaggt
aaagtaattagaaaggtaaagtaattagaaagggcctcactctatagtcc
tggctaacttcaaaggtaatctccctgcctcagcctcatgagtgctgata
ttatacctctcaggagatatatttaatttttaaatgttgtttcttttttc
tctgtatataaaataaattttttcatacaatatattctgatgatgatttt
ccctcacagaacccgttccagatccttcttacctcctctaaacataattt
ttgataagaaaaatatttaaaatatggttttaaaattgtgtttgttcaat
aaccatgaattagtagcattcagttgtgtaagatactttcaaatggacaa
caccaaatgcatcaagtgacataaacattcactaaaggcttaagtgtata
aaataagaagtcttccagaaataactactcaccttgtctttgttagggtt
tctttgctgtgaagagacatcatgaccaaggcaactgttataaaggacaa
catttagctgggactggcgtacacattcagaggttcagtccattatcatc
atcgaggaaagcatggaagcatacaggcagacatggggcttaaggagcta
agagttctgcatcttgatttgactggaagctagaaacaaactgttttcag
gcagctaagaggaaggtcttaactcccatccccacagtgacacacttcct
ctaataagaccattcctacttcaacaaggcttcaactcctaatagtgcca
atccctgggccaaacatattcatactactcttctccaaccctttttagaa
tcttattcaaaatgaagttcatttattttctttttagctttgaaaacttg
tagttgatgattgctaaatttagtaactaaagccttatgccaatgttttt
tctgaaagcaagatacaagtcttcaaacctgttatttctttgccaagtct
cacacaaagacactgcatagcctcatgataatgtgttatttggacaattc
aattg

gaattctacttagaaagtctttacctgtgttagtaacttgaaagatactc
tgtacttttaacttgagaaattttgagataatggattttaggttgatgtc
cttgacattgtgtccacttgagttttttagagggtcaaagataagaaaat
aatttaattttttatacaagttgaaattcaagtttcctggcaccatttat
atatatatatatatatatatatatatattatatatatatattatatatat
atttagtccatgagcctttctatcttctagcatctgcctcaatttcttga
agtttttattacaaaagtctttcatttccttggctaagtttgttcctagg
tattttattttcatatggatgaggctgttgtcagagtgattgttttcctg
atttatttgttattgtcattcctgcataggaaagctctgattcttatgtg
atattttcatacctgcaatattaatcctctttgggggtttgatagtgtca
ttagagcttcatatttgctttctttttcctatgacctgtgacttcaacta
tgatattaagcaatagtgtagaaacttgccttgttgctgattttagtgaa
aaaagtttaatttttgtgttacatattcaacatttattttggctacaggc
ttattttctacagctttttattacagtggggtattatcttatctctccag
ccaaagcctttttcagaaagagatgttagagttttgtcaaaggcctttta
tacatctaatgtgattttttatgatttctttatatgtaaatgatggaaaa
catttatttgatttgattgtgttgtaattattctgcatctctagaatgaa
accacttggtccattttgaaggatctttgttatatggtcttgaatccact
ttacccagtatttcatgtgaaattcttgtatcttggtccaggagagagat
gagtccgggaattctttcttgttattgtggcttttggccagaattcttgt
tacatttattgatcatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26958265_26959464
seq2: B6Ng01-236I16.b_47_1251 (reverse)

seq1  CAATTG-ATTCT-CAAATAACATTTAATCAATGAGGCTATGCGGTTGCTC  48
      |||||| ||| | |||||||||  | ||| |||||||||||| ||  || 
seq2  CAATTGAATTGTCCAAATAACACATTATC-ATGAGGCTATGCAGTGTCT-  48

seq1  TTGTGTTGAGACTTTGC-AAGAAAT-ACA-GTTTGAAGAC-TGTATCCTG  94
      ||||| |||||||| || ||||||| ||| |||||||||| |||||| ||
seq2  TTGTG-TGAGACTTGGCAAAGAAATAACAGGTTTGAAGACTTGTATCTTG  97

seq1  CCTTTTCAG-AAAAACATT-GCATA--GCTTTAGTTAACTAAATTTAGCA  140
      |  |||||| ||||||||| |||||  ||||||||| |||||||||||||
seq2  C--TTTCAGAAAAAACATTGGCATAAGGCTTTAGTT-ACTAAATTTAGCA  144

seq1  ATCATTAACTAC-AGTTTTCAAAGCTAAAAAG-AAATAAATGAACTTCAT  188
      ||||| |||||| ||||||||||||||||||| |||||||||||||||||
seq2  ATCATCAACTACAAGTTTTCAAAGCTAAAAAGAAAATAAATGAACTTCAT  194

seq1  TTTGAATAAAGATTCTAAAAAGGGTTGGAGAAGAGTAGTATGAATATGTT  238
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAT-AAGATTCTAAAAAGGGTTGGAGAAGAGTAGTATGAATATGTT  243

seq1  TGGCCCAGGGATTGGCACTATTAGGAGTTGAAGCCTTGTTGAAGTAGGAA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAGGGATTGGCACTATTAGGAGTTGAAGCCTTGTTGAAGTAGGAA  293

seq1  TGGTCTTATTAGAGGAAGTGTGTCACTGTGGGGATGGGAGTTAAGACCTT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTATTAGAGGAAGTGTGTCACTGTGGGGATGGGAGTTAAGACCTT  343

seq1  CCTCTTAGCTGCCTGAAAACAGTTTGTTTCTAGCTTCCAGTCAAATCAAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAGCTGCCTGAAAACAGTTTGTTTCTAGCTTCCAGTCAAATCAAG  393

seq1  ATGCAGAACTCTTAGCTCCTTAAGCCCCATGTCTGCCTGTATGCTTCCAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAACTCTTAGCTCCTTAAGCCCCATGTCTGCCTGTATGCTTCCAT  443

seq1  GCTTTCCTCGATGATGATAATGGACTGAACCTCTGAATGTGTACGCCAGT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCTCGATGATGATAATGGACTGAACCTCTGAATGTGTACGCCAGT  493

seq1  CCCAGCTAAATGTTGTCCTTTATAACAGTTGCCTTGGTCATGATGTCTCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTAAATGTTGTCCTTTATAACAGTTGCCTTGGTCATGATGTCTCT  543

seq1  TCACAGCAAAGAAACCCTAACAAAGACAAGGTGAGTAGTTATTTCTGGAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCAAAGAAACCCTAACAAAGACAAGGTGAGTAGTTATTTCTGGAA  593

seq1  GACTTCTTATTTTATACACTTAAGCCTTTAGTGAATGTTTATGTCACTTG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTTATTTTATACACTTAAGCCTTTAGTGAATGTTTATGTCACTTG  643

seq1  ATGCATTTGGTGTTGTCCATTTGAAAGTATCTTACACAACTGAATGCTAC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTGGTGTTGTCCATTTGAAAGTATCTTACACAACTGAATGCTAC  693

seq1  TAATTCATGGTTATTGAACAAACACAATTTTAAAACCATATTTTAAATAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATGGTTATTGAACAAACACAATTTTAAAACCATATTTTAAATAT  743

seq1  TTTTCTTATCAAAAATTATGTTTAGAGGAGGTAAGAAGGATCTGGAACGG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTATCAAAAATTATGTTTAGAGGAGGTAAGAAGGATCTGGAACGG  793

seq1  GTTCTGTGAGGGAAAATCATCATCAGAATATATTGTATGAAAAAATTTAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTGAGGGAAAATCATCATCAGAATATATTGTATGAAAAAATTTAT  843

seq1  TTTATATACAGAGAAAAAAGAAACAACATTTAAAAATTAAATATATCTCC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATACAGAGAAAAAAGAAACAACATTTAAAAATTAAATATATCTCC  893

seq1  TGAGAGGTATAATATCAGCACTCATGAGGCTGAGGCAGGGAGATTACCTT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGTATAATATCAGCACTCATGAGGCTGAGGCAGGGAGATTACCTT  943

seq1  TGAAGTTAGCCAGGACTATAGAGTGAGGCCCTTTCTAATTACTTTACCTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTAGCCAGGACTATAGAGTGAGGCCCTTTCTAATTACTTTACCTT  993

seq1  TCTAATTACTTTACCTTTCTAATTACATGTATCAGGCCCTGTTTTTGTTT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTACTTTACCTTTCTAATTACATGTATCAGGCCCTGTTTTTGTTT  1043

seq1  TTATCTTTTCAGGGTGTAGAAAACTTTACTGATGGCATTAAAGAGAGTAT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTTCAGGGTGTAGAAAACTTTACTGATGGCATTAAAGAGAGTAT  1093

seq1  GGCCTCTCAGGCCCCTCTCATTATTCTGGGAGTCTGGGATCAAAACTGTG  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTCAGGCCCCTCTCATTATTCTGGGAGTCTGGGATCAAAACTGTG  1143

seq1  AGAGAGATACTCAGTGTTGGGGGCTGAGTTGGGACAGGGACTTCTCAGCA  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGATACTCAGTGTTGGGGGCTGAGTTGGGACAGGGACTTCTCAGCA  1193

seq1  GCTGAGGAATTC  1200
      ||||||||||||
seq2  GCTGAGGAATTC  1205


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