BAC Information

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BAC

Clone NameB6Ng01-236P07
Chromosome11 (Build37)
Map Location 107,213,467 - 107,351,390
singlet/doubletdoublet
Overlap genePitpnc1, Psmd12
Upstream gene2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692
Downstream geneA830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca, Apoh, LOC100041381, Ccdc46
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236P07.bB6Ng01-236P07.g
ACCGA048046GA048047
length1,142273
definitionB6Ng01-236P07.b B6Ng01-236P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,350,263 - 107,351,390)(107,213,467 - 107,213,739)
sequence
gaattccaggacagccagggttatacagagaaaccctgtctggaaaaacc
aaaacaaacaaacaaaaaaagcagagaatgaagacaatacagggcactag
accctttgaataaagtcatttctttccttccttaaccccagtagaaaagg
aaattgactggaatgtcagagtaacctatttagcccagtgggcagcctct
gatggggtccaggcactgtgaggtcattatcatgacttgacactttgagc
acagaaaatgtactataccctggtgacatccctggcctttctcagaatgc
ttagctgtaaagggaaagcacacacatccattctgtaagtatgtgctttt
agagtgtcctggtgactacagcattaaacccagggttctgtaggcaaggg
aaacaattatcactgagatcttagagtcccatctctggcaatttttcttg
gtcaaaccattttggtctagaaatttacctctaatcaaccattcactaag
aataaagccaataatttaaaagcagcagataatgcatttacttatttgaa
ttctaaacagaggccagccccggtggtgcatgtcttaatctcagtactcg
ggaggcagaggcaggtggatctctatgaattccaggtcagccagggtcac
acagagaaaccttgtctcaaaaaaccaaaaccaaccaaccaaccaaagaa
ctagaaaaaaaaaaaaaaaaaaaaaaaaaaaaccacctcaaaatctaaac
agaacacaaatgttcaaaaaataatttctacaaaaactaaggtcaatctt
ttgatgctagtatttcttcaaactttgtttagcaggttagcttgcaaaat
cagttttcagggctccaagaacacactgtgctgtgtacatgctcactcct
tgttaacggtaccaactacaacgcagtgaagtattcaaaataatcctact
tccacgggaaaaatactaccaacttcagcatatcagttttcatggtcccc
taaaccatttttacctgtaacctcttgaaaggatggaggcagcattcttt
cacatcgccattttggctcttaataatttgcttaaggtttatctactcga
gcccgctccatttcgacctaaactctataaagagaagtgatg
tttagatcagctctggagtcttagttttgttacatagcctcttattgtta
ttagaaccatacgaagccaagtgtggtggcgcacacctttaatctcggga
ggcagaggcaggcggatttctgagtttgaggccagcctggtctacaaagt
gagttgcaggacagccagggctatacagagaaaccctgtctcgagaaaca
gaaagaaaaaaaaaaagtagaagaagaagaagaagaagaagaaggaggag
gaggaggaggaggaggaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_107350263_107351390
seq2: B6Ng01-236P07.b_46_1187 (reverse)

seq1  CATCACTTTCTCTTTATAGA-TTTATGTTGAAATTGAGCGTGCTCGGCTG  49
      |||||| ||||||||||||| |||| || ||||| ||||| |||||  | 
seq2  CATCAC-TTCTCTTTATAGAGTTTAGGTCGAAATGGAGCGGGCTCGAGTA  49

seq1  ACTAAAACCTTAGCAACTATTAAAGAG-CAAAATGGCGATGTGAAAG-AG  97
        |||| | | ||||| |  | ||||| ||||||||||||||||||| | 
seq2  GATAAACCTTAAGCAAATTATTAAGAGCCAAAATGGCGATGTGAAAGAAT  99

seq1  GCTGCCTCCATCC-TTCAAGA-GTTACAGGT-AAAATGATTTA-GGGACC  143
      ||||||||||||| ||||||| ||||||||| |||||| |||| ||||||
seq2  GCTGCCTCCATCCTTTCAAGAGGTTACAGGTAAAAATGGTTTAGGGGACC  149

seq1  ATGGAAACTGATATGCTG-AGTTGGTAGTA-TTTTCCCGTGGAAGTA-GA  190
      ||| |||||||||||||| ||||||||||| |||||||||||||||| ||
seq2  ATGAAAACTGATATGCTGAAGTTGGTAGTATTTTTCCCGTGGAAGTAGGA  199

seq1  TTATTTTG-ATACTTCACTGC-TTGTAGTTGCTA-CGTTAACAA-GAGTG  236
      |||||||| |||||||||||| ||||||||| || ||||||||| |||||
seq2  TTATTTTGAATACTTCACTGCGTTGTAGTTGGTACCGTTAACAAGGAGTG  249

seq1  AGCATGTACACAGCACAGTGTGTTCTTGGAGCCCTGAAAACTGATTTTGC  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTACACAGCACAGTGTGTTCTTGGAGCCCTGAAAACTGATTTTGC  299

seq1  AAGCTAACCTGCTAAACAAAGTTTGAAGAAATACTAGCATCAAAAGATTG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAACCTGCTAAACAAAGTTTGAAGAAATACTAGCATCAAAAGATTG  349

seq1  ACCTTAGTTTTTGTAG-AATTATTTTTTGAACATTTGTGTTCTGTTTAGA  385
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACCTTAGTTTTTGTAGAAATTATTTTTTGAACATTTGTGTTCTGTTTAGA  399

seq1  TTTTGAGGTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAGTTCTTTG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAGTTCTTTG  449

seq1  GTTGGTTGGTTGGTTTTGGTTTTTTGAGACAAGGTTTCTCTGTGTGACCC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTGGTTGGTTTTGGTTTTTTGAGACAAGGTTTCTCTGTGTGACCC  499

seq1  TGGCTGACCTGGAATTCATAGAGATCCACCTGCCTCTGCCTCCCGAGTAC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGACCTGGAATTCATAGAGATCCACCTGCCTCTGCCTCCCGAGTAC  549

seq1  TGAGATTAAGACATGCACCACCGGGGCTGGCCTCTGTTTAGAATTCAAAT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTAAGACATGCACCACCGGGGCTGGCCTCTGTTTAGAATTCAAAT  599

seq1  AAGTAAATGCATTATCTGCTGCTTTTAAATTATTGGCTTTATTCTTAGTG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATGCATTATCTGCTGCTTTTAAATTATTGGCTTTATTCTTAGTG  649

seq1  AATGGTTGATTAGAGGTAAATTTCTAGACCAAAATGGTTTGACCAAGAAA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTGATTAGAGGTAAATTTCTAGACCAAAATGGTTTGACCAAGAAA  699

seq1  AATTGCCAGAGATGGGACTCTAAGATCTCAGTGATAATTGTTTCCCTTGC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCAGAGATGGGACTCTAAGATCTCAGTGATAATTGTTTCCCTTGC  749

seq1  CTACAGAACCCTGGGTTTAATGCTGTAGTCACCAGGACACTCTAAAAGCA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAACCCTGGGTTTAATGCTGTAGTCACCAGGACACTCTAAAAGCA  799

seq1  CATACTTACAGAATGGATGTGTGTGCTTTCCCTTTACAGCTAAGCATTCT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTACAGAATGGATGTGTGTGCTTTCCCTTTACAGCTAAGCATTCT  849

seq1  GAGAAAGGCCAGGGATGTCACCAGGGTATAGTACATTTTCTGTGCTCAAA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGCCAGGGATGTCACCAGGGTATAGTACATTTTCTGTGCTCAAA  899

seq1  GTGTCAAGTCATGATAATGACCTCACAGTGCCTGGACCCCATCAGAGGCT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAAGTCATGATAATGACCTCACAGTGCCTGGACCCCATCAGAGGCT  949

seq1  GCCCACTGGGCTAAATAGGTTACTCTGACATTCCAGTCAATTTCCTTTTC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTGGGCTAAATAGGTTACTCTGACATTCCAGTCAATTTCCTTTTC  999

seq1  TACTGGGGTTAAGGAAGGAAAGAAATGACTTTATTCAAAGGGTCTAGTGC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGGTTAAGGAAGGAAAGAAATGACTTTATTCAAAGGGTCTAGTGC  1049

seq1  CCTGTATTGTCTTCATTCTCTGCTTTTTTTGTTTGTTTGTTTTGGTTTTT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATTGTCTTCATTCTCTGCTTTTTTTGTTTGTTTGTTTTGGTTTTT  1099

seq1  CCAGACAGGGTTTCTCTGTATAACCCTGGCTGTCCTGGAATTC  1128
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAGGGTTTCTCTGTATAACCCTGGCTGTCCTGGAATTC  1142

seq1: chr11_107213467_107213739
seq2: B6Ng01-236P07.g_71_343

seq1  TTTAGATCAGCTCTGGAGTCTTAGTTTTGTTACATAGCCTCTTATTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATCAGCTCTGGAGTCTTAGTTTTGTTACATAGCCTCTTATTGTTA  50

seq1  TTAGAACCATACGAAGCCAAGTGTGGTGGCGCACACCTTTAATCTCGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACCATACGAAGCCAAGTGTGGTGGCGCACACCTTTAATCTCGGGA  100

seq1  GGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGT  150

seq1  GAGTTGCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAGAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAGAAACA  200

seq1  GAAAGAAAAAAAAAAAGTAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAAAAAAAAAGTAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAG  250

seq1  GAGGAGGAGGAGGAGGAGGAGGA  273
      |||||||||||||||||||||||
seq2  GAGGAGGAGGAGGAGGAGGAGGA  273