BAC Information

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BAC

Clone NameB6Ng01-237K20
Chromosome11 (Build37)
Map Location 80,278,261 - 80,406,424
singlet/doubletdoublet
Overlap genePsmd11, Cdk5r1, Myo1d
Upstream geneNf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726
Downstream geneTmem98, Spaca3, Accn1, 1700071K01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237K20.bB6Ng01-237K20.g
ACCGA048570GA048571
length1,142821
definitionB6Ng01-237K20.b B6Ng01-237K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,405,276 - 80,406,424)(80,278,261 - 80,279,072)
sequence
gaattctcttgctgttcccttgttccttcagaagccagacacacctcaga
cctcaggcactttcgtcccagttgctaatgagctgaaacgcaaggacaag
tatatgaacgttctcttttcctgtcacgtccggaaggtacgtagctcttg
aaccagactatcctggagagagaggactgagaggaaactcaggtgtgggc
ctcagtgaaaaccagcagtgccgtgcagctgggagcagcccagggagccc
ccccccccccatctgtgcttggagcctgactggacaatttagagttgtgt
taataaagcctccctgagggaggaggatagtcttggataacttttttttt
tcatttatgtttctgagacagggtcttataaagtcaaggctggcctcaga
atcactgtagccaagggtaggctggagcgccttcctgtctccctgcctct
gcctctccagcgctgtattcagatgtgtgccactttgcccagctcgatcg
gccttccttttgtaaacagctttggtgtgcccttcaggccatgggtctgt
gttttactacatgcatgtccttcacagcaactacaggtcggctctttatt
gagtggttattatacacaagtatcattgctgcttttaaaactagatttgc
agactggagagatgactcagcgggtaagagcactgactgcccttccaaag
gtcctgagttcaaatcccagcaaccacatggtagctcacaaccacctgta
atgagatctgatgccttcttctggtacgtctgaagatagcttcagtgtat
cacatgatggctcataactatctgtacagctacagtgtactcatatacat
aaaaataaataaataaatctttaaaaaaaaagaacaaaaaaaatagattt
gcaggagctggagagatggctcagcagttcaagaaccttctgctcttcca
gagaatcggagtttggttcttagcacctgtgtcaagcagttcgccacctg
tactccagctccaggggcaattgatgcctctggcctccataggacataca
tatgcatatttaaaaataatatttaaaaactacacagagaaaataagaat
ttttattgaaagaagctaattaattaatctccaccataattc
gaattcttatcctggtttatctttctgggaaacttctatttaagtcattt
cacatttcaaagggaaactggttggcatacagtgatattcaatactgctg
gcttttctacccagtccccttaaaaaagtgatggtgaggacaggctgttt
ataacagaaggtgcttatgagaccttgggtatatgtacacatgcagaaca
gattatgttcatgacatttatttatttgtttgtttgtttgttttttaatt
ctcagacagaagcattgaaatgtgtggctcaagctagcaagaacagatca
ctggcagattttgaaaaggtgagcatggtattgaattgacggggaaccgg
tggagaagagggccattgagggacagtttcagcagtggtgtcattctagc
gcttgggaggcagaggcaggcagatccctgagctcgaggccagcctggtc
tacagagtgaattccagggcagccagggctacacagagaaaccctgcctt
aaaaaacaaacaaaaccacttcaaagttagagatgttaatgttgatccca
taggctcttcacccagaaccatcttgaatctaggacgtggtttccttaca
ctgagtgcagtgggacgctgagctgtgcttaactcatctgtgcgcatttt
tatgccaagttgtcattcaagactggagaaatgtttcacaggccaagaga
atgctctgctctttacagaggaccctgagctgcattcccaacactcttta
tccgcaagctcaaagctcctatcactccagcccagggatgggacacacgt
cacacacgcacacacacactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_80405276_80406424
seq2: B6Ng01-237K20.b_45_1186 (reverse)

seq1  GAATTAT-GTTGAGATTATTTAATAAGCTTCTTTTTAAATAAAAATTCTT  49
      ||||||| || ||||||| ||||| ||||||  ||| |||||||||||||
seq2  GAATTATGGTGGAGATTAATTAATTAGCTTC--TTTCAATAAAAATTCTT  48

seq1  ATTTCTTCTGGTTGTAGTTTTTAAATATTTATTTTTAAATTATGCATATG  99
      ||||  ||||  ||||||||||||||| ||||||||||| ||||||||||
seq2  ATTTTCTCTG--TGTAGTTTTTAAATA-TTATTTTTAAA-TATGCATATG  94

seq1  TATGTCCTATTGGAGGCCAGAGGCATCAAATGCCCCTGGAGCTGGAGTAA  149
      ||||||||| ||||||||||||||||||| |||||||||||||||||| |
seq2  TATGTCCTA-TGGAGGCCAGAGGCATCAATTGCCCCTGGAGCTGGAGT-A  142

seq1  CAGGTGGCGAACTGCCTGACACAGGTGCTAAGAACCAAACTCCGATTCTC  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGGTGGCGAACTGCTTGACACAGGTGCTAAGAACCAAACTCCGATTCTC  192

seq1  TGGAAGAGCAGAAGGTTCTTGAACTGCTGAGCCATCTCTCCAGCTCCTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGCAGAAGGTTCTTGAACTGCTGAGCCATCTCTCCAGCTCCTGC  242

seq1  AAATCTATTTTTTTTGTTCTTTTTTTTTAAAGATTTATTTATTTATTTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATTTTTTTTGTTCTTTTTTTTTAAAGATTTATTTATTTATTTTT  292

seq1  ATGTATATGAGTACACTGTAGCTGTACAGATAGTTATGAGCCATCATGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATGAGTACACTGTAGCTGTACAGATAGTTATGAGCCATCATGTG  342

seq1  ATACACTGAAGCTATCTTCAGACGTACCAGAAGAAGGCATCAGATCTCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTGAAGCTATCTTCAGACGTACCAGAAGAAGGCATCAGATCTCAT  392

seq1  TACAGGTGGTTGTGAGCTACCATGTGGTTGCTGGGATTTGAACTCAGGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTGGTTGTGAGCTACCATGTGGTTGCTGGGATTTGAACTCAGGAC  442

seq1  CTTTGGAAGGGCAGTCAGTGCTCTTACCCGCTGAGTCATCTCTCCAGTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAAGGGCAGTCAGTGCTCTTACCCGCTGAGTCATCTCTCCAGTCT  492

seq1  GCAAATCTAGTTTTAAAAGCAGCAATGATACTTGTGTATAATAACCACTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCTAGTTTTAAAAGCAGCAATGATACTTGTGTATAATAACCACTC  542

seq1  AATAAAGAGCCGACCTGTAGTTGCTGTGAAGGACATGCATGTAGTAAAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAGCCGACCTGTAGTTGCTGTGAAGGACATGCATGTAGTAAAAC  592

seq1  ACAGACCCATGGCCTGAAGGGCACACCAAAGCTGTTTACAAAAGGAAGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCCATGGCCTGAAGGGCACACCAAAGCTGTTTACAAAAGGAAGGC  642

seq1  CGATCGAGCTGGGCAAAGTGGCACACATCTGAATACAGCGCTGGAGAGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCGAGCTGGGCAAAGTGGCACACATCTGAATACAGCGCTGGAGAGGC  692

seq1  AGAGGCAGGGAGACAGGAAGGCGCTCCAGCCTACCCTTGGCTACAGTGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGGAGACAGGAAGGCGCTCCAGCCTACCCTTGGCTACAGTGAT  742

seq1  TCTGAGGCCAGCCTTGACTTTATAAGACCCTGTCTCAGAAACATAAATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGCCAGCCTTGACTTTATAAGACCCTGTCTCAGAAACATAAATGA  792

seq1  AAAAAAAAAGTTATCCAAGACTATCCTCCTCCCTCAGGGAGGCTTTATTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGTTATCCAAGACTATCCTCCTCCCTCAGGGAGGCTTTATTA  842

seq1  ACACAACTCTAAATTGTCCAGTCAGGCTCCAAGCACAGATGGGGGGGGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACTCTAAATTGTCCAGTCAGGCTCCAAGCACAGATGGGGGGGGGG  892

seq1  GGGCTCCCTGGGCTGCTCCCAGCTGCACGGCACTGCTGGTTTTCACTGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCCTGGGCTGCTCCCAGCTGCACGGCACTGCTGGTTTTCACTGAG  942

seq1  GCCCACACCTGAGTTTCCTCTCAGTCCTCTCTCTCCAGGATAGTCTGGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACACCTGAGTTTCCTCTCAGTCCTCTCTCTCCAGGATAGTCTGGTT  992

seq1  CAAGAGCTACGTACCTTCCGGACGTGACAGGAAAAGAGAACGTTCATATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCTACGTACCTTCCGGACGTGACAGGAAAAGAGAACGTTCATATA  1042

seq1  CTTGTCCTTGCGTTTCAGCTCATTAGCAACTGGGACGAAAGTGCCTGAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCTTGCGTTTCAGCTCATTAGCAACTGGGACGAAAGTGCCTGAGG  1092

seq1  TCTGAGGTGTGTCTGGCTTCTGAAGGAACAAGGGAACAGCAAGAGAATTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTGTGTCTGGCTTCTGAAGGAACAAGGGAACAGCAAGAGAATTC  1142

seq1: chr11_80278261_80279072
seq2: B6Ng01-237K20.g_68_888

seq1  GAATTCTTATCCTGGTTTATCTTTCTGGGAAACTTCTATTTAAGTCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCCTGGTTTATCTTTCTGGGAAACTTCTATTTAAGTCATTT  50

seq1  CACATTTCAAAGGGAAACTGGTTGGCATACAGTGATATTCAATACTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTCAAAGGGAAACTGGTTGGCATACAGTGATATTCAATACTGCTG  100

seq1  GCTTTTCTACCCAGTCCCCTTAAAAAAGTGATGGTGAGGACAGGCTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTACCCAGTCCCCTTAAAAAAGTGATGGTGAGGACAGGCTGTTT  150

seq1  ATAACAGAAGGTGCTTATGAGACCTTGGGTATATGTACACATGCAGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGAAGGTGCTTATGAGACCTTGGGTATATGTACACATGCAGAACA  200

seq1  GATTATGTTCATGACATTTATTTATTTGTTTGTTTGTTTGTTTTTTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGTTCATGACATTTATTTATTTGTTTGTTTGTTTGTTTTTTAATT  250

seq1  CTCAGACAGAAGCATTGAAATGTGTGGCTCAAGCTAGCAAGAACAGATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACAGAAGCATTGAAATGTGTGGCTCAAGCTAGCAAGAACAGATCA  300

seq1  CTGGCAGATTTTGAAAAGGTGAGCATGGTATTGAATTGACGGGGAACCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGATTTTGAAAAGGTGAGCATGGTATTGAATTGACGGGGAACCGG  350

seq1  TGGAGAAGAGGGCCATTGAGGGACAGTTTCAGCAGTGGTGTCATTCTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGAGGGCCATTGAGGGACAGTTTCAGCAGTGGTGTCATTCTAGC  400

seq1  GCTTGGGAGGCAGAGGCAGGCAGATCCCTGAGCTCGAGGCCAGCCTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGAGGCAGAGGCAGGCAGATCCCTGAGCTCGAGGCCAGCCTGGTC  450

seq1  TACAGAGTGAATTCCAGGGCAGCCAGGGCTACACAGAGAAACCCTGCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTGAATTCCAGGGCAGCCAGGGCTACACAGAGAAACCCTGCCTT  500

seq1  AAAAAACAAACAAAACCACTTCAAAGTTAGAGATGTTAATGTTGATCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAACAAAACCACTTCAAAGTTAGAGATGTTAATGTTGATCCCA  550

seq1  TAGGCTCTTCACCCAGAACCATCTTGAATCTAGGACGTGG-TTCCTTACA  599
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGGCTCTTCACCCAGAACCATCTTGAATCTAGGACGTGGTTTCCTTACA  600

seq1  CTGAGTGCAGTGGGACGCTGAGCTGTGCTTAACTCATCTGTGCGCA-TTT  648
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTGAGTGCAGTGGGACGCTGAGCTGTGCTTAACTCATCTGTGCGCATTTT  650

seq1  TATGCCAAGTTGTCATTCAAGACTGGAGAAATGTTTCACAGGCCAAGAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAAGTTGTCATTCAAGACTGGAGAAATGTTTCACAGGCCAAGAGA  700

seq1  ATGCTCTGCTC-TTACAGAGGA-CCTGAGCTGCATTCCCAACACTC-TTA  745
      ||||||||||| |||||||||| ||||||||||||||||||||||| |||
seq2  ATGCTCTGCTCTTTACAGAGGACCCTGAGCTGCATTCCCAACACTCTTTA  750

seq1  TCCGC-AGCTCAAAGCTCCTATCACTCCAGCCCA-GGAT-GGACACACG-  791
      ||||| |||||||||||||||||||||||||||| |||| ||||||||| 
seq2  TCCGCAAGCTCAAAGCTCCTATCACTCCAGCCCAGGGATGGGACACACGT  800

seq1  CACACACGCACACACACACAC  812
      ||||||||||||||||||| |
seq2  CACACACGCACACACACACTC  821