BAC Information

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BAC

Clone NameB6Ng01-238A09
Chromosome11 (Build37)
Map Location 9,882,011 - 9,883,185
singlet/doubletsinglet
Overlap genenone
Upstream geneHus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13, LOC665435
Downstream geneLOC382483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238A09.bB6Ng01-238A09.g
ACCGA048828GA048829
length1,0061,173
definitionB6Ng01-238A09.b B6Ng01-238A09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaatacttttatcatgaatgggagttggattttg
tcaaatgctttctcagcttctaacgagatgatcatgtgctttttgtcttt
gagtttgtttatatagtggattacgttgatggatttcagtatattgaacc
atccctgcatccctgggatgaagcttacttgatcatgatggattatcact
ttgatatgttcttggattcagtatgtggggattttagtgagtatttttgc
attgatatgcataaggaaaattggtctgaagtgttctttctttgttgaat
ctttgtttggtttaggtatcagagaattgtggcttcatggaatgaattgg
gtagaataccttctgtttctattttgtggaatagtttgaggagaattgga
attagttcttctttcaagatctgatagaactctgcactaaacccatctgg
tcctgggccttttttttttttttttttggttggaagactattaatggctg
tttctatttctttataagaaatgggactgtatagatcctgatttaacttt
ggtacctggtatctgtctaggaaattgtccatttcatctaggttttccag
ggatttttgttgttgttgtttgatttttgtttttgttttttattttgttt
tgttttgttttttgaggatagccttttgtagtaggatctgatgatgtttt
ggttttcctcaggatctgttgtgatgactcctttttcgtttctgattttg
ttaattaggatactgtccttgtgctttctccttagtctggctaagggttt
atctatcctgttgattttctctaagaaccagctactgttttggttgattc
tttgaatagttctttttgtttccacttggttgaattcatccctgactttg
attaattcctgttttgtacctcctccttaggtgaatttgcttcctttttg
tctgaagcctttacttgtgcctatcaaagcgtgctagtggatatgcctcc
gtgtct

gaattctttgtttagctctataccccatttttaatggggttatttgattt
tctggagtccatcttcttgaattctttgtatatattggatattagtcccc
tattggatttaggattggtcaagatcctttcccaatcttcacaagcattt
ttaacacaaattaaaacaaaaatttagcaagcttcatggaagtattaggc
aatatcagtgaaagagtagaaagcaaacttttgaatagaaagaagggaga
agcctgtaacagttgttctaattctatcaatgggcatattaaaaaatagg
ccttctttttttcctttctgaattatatcagttttctaaaacaacaactt
taatatttagtattttcaactaaacagatttaattccagatgttttgatt
tccatgtaaataattgtttgttcctttaatattatggaaaataaagttct
gattagacacatatacatgcacacacaattgcacacacatgtgcacatac
atgttcacatatatgttcacacacattcatatacatgtaatttaagaaat
ccttcaggccaaaatggaaataaaagcaattcttggaatcttagaagata
aatttaaagaaataagtggtaaaataattcaccagtcaaatcagagaaga
gaaagcaaattcattgagtccattgcaaggcagcagcaggaagggcagaa
atggaaagagtatctactgaaacatggtagactgtgaaagattttgtttg
ggcattatcctctttttctggtttagcttgccactggacaaatgagacca
gatctgattggtcagtatttcaccctgggacatagttgggttttcagagt
agtgactctgtggttaattttgattgtctatgattattcatactattttc
atagtgcccccagaacttagactaacattatatcactatgcaacctaaaa
ctgctcatagttcatatttatgatattcttacaaatagttctgtccagac
tatggtagtcttatgatcataatttggtcctttaatttctcatgtggtct
gtgtcagtaagtgtggctcttctcccaagcctgagacagacctaagagac
ctgagtgcttggcaccaatggaacttaaggacaaggtgggaccctctcct
tgcctgcactctgcaaatttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_9882011_9883185
seq2: B6Ng01-238A09.g_66_1238

seq1  GAATTCTTTGTTTAGCTCTATACCCCATTTTTAATGGGGTTATTTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTATACCCCATTTTTAATGGGGTTATTTGATTT  50

seq1  TCTGGAGTCCATCTTCTTGAATTCTTTGTATATATTGGATATTAGTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTCCATCTTCTTGAATTCTTTGTATATATTGGATATTAGTCCCC  100

seq1  TATTGGATTTAGGATTGGTCAAGATCCTTTCCCAATCTTCACAAGCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGATTTAGGATTGGTCAAGATCCTTTCCCAATCTTCACAAGCATTT  150

seq1  TTAACACAAATTAAAACAAAAATTTAGCAAGCTTCATGGAAGTATTAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACAAATTAAAACAAAAATTTAGCAAGCTTCATGGAAGTATTAGGC  200

seq1  AATATCAGTGAAAGAGTAGAAAGCAAACTTTTGAATAGAAAGAAGGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAGTGAAAGAGTAGAAAGCAAACTTTTGAATAGAAAGAAGGGAGA  250

seq1  AGCCTGTAACAGTTGTTCTAATTCTATCAATGGGCATATTAAAAAATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTAACAGTTGTTCTAATTCTATCAATGGGCATATTAAAAAATAGG  300

seq1  CCTTCTTTTTTTCCTTTCTGAATTATATCAGTTTTCTAAAACAACAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTTTTTCCTTTCTGAATTATATCAGTTTTCTAAAACAACAACTT  350

seq1  TAATATTTAGTATTTTCAACTAAACAGATTTAATTCCAGATGTTTTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTAGTATTTTCAACTAAACAGATTTAATTCCAGATGTTTTGATT  400

seq1  TCCATGTAAATAATTGTTTGTTCCTTTAATATTATGGAAAATAAAGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTAAATAATTGTTTGTTCCTTTAATATTATGGAAAATAAAGTTCT  450

seq1  GATTAGACACATATACATGCACACACAATTGCACACACATGTGCACATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGACACATATACATGCACACACAATTGCACACACATGTGCACATAC  500

seq1  ATGTTCACATATATGTTCACACACATTCATATACATGTAATTTAAGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCACATATATGTTCACACACATTCATATACATGTAATTTAAGAAAT  550

seq1  CCTTCAGGCCAAAATGGAAATAAAAGCAATTCTTGGAATCTTAGAAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGCCAAAATGGAAATAAAAGCAATTCTTGGAATCTTAGAAGATA  600

seq1  AATTTAAAGAAATAAGTGGTAAAATAATTCACCAGTCAAATCAGAGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAGAAATAAGTGGTAAAATAATTCACCAGTCAAATCAGAGAAGA  650

seq1  GAAAGCAAATTCATTGAGTCCATTGCAAGGCAGCAGCAGGAAGGGCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAATTCATTGAGTCCATTGCAAGGCAGCAGCAGGAAGGGCAGAA  700

seq1  ATGGAAAGAGTATCTACTGAAACATGGTAGACTGTGAAAGATTTTGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGAGTATCTACTGAAACATGGTAGACTGTGAAAGATTTTGTTTG  750

seq1  GGCATTATCCTCTTTTTCTGGTTTAGCTTGCCACTGGACAAATGAGACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTATCCTCTTTTTCTGGTTTAGCTTGCCACTGGACAAATGAGACCA  800

seq1  GATCTGATTGGTCAGTATTTCACCCTGGGACATAGTTGGGTTTTCAGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATTGGTCAGTATTTCACCCTGGGACATAGTTGGGTTTTCAGAGT  850

seq1  AGTGACTCTGTGGTTAATTTTGATTGTCTATGATTATTCATACTATTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTCTGTGGTTAATTTTGATTGTCTATGATTATTCATACTATTTTC  900

seq1  ATAGTGCCCCCAGAACTTAGACTAACATTATATCACTATGCAACCTAAAA  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATAGTGCCCCCAGAACTTAGACTAACATTATATCACTATGCAACCT-AAA  949

seq1  ACTGCTCATAGTTCATATTTATGATATTCTTACAAATAGTTCCTGGTCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  ACTGCTCATAGTTCATATTTATGATATTCTTACAAATAGTTC--TGTCCA  997

seq1  GAACTATGGGTAGTC-TATGATCAATAATTTTGTTCTTTAATTTTCTCAT  1049
      | ||||| ||||||| ||||||| ||||||| || |||||| ||||||||
seq2  G-ACTAT-GGTAGTCTTATGATC-ATAATTTGGTCCTTTAA-TTTCTCAT  1043

seq1  GTGGTCTGTGTTCAGTAAGTGT-GCTCTTCTCCCAGCCTTGAG-CAGACT  1097
      |||||||||| ||||||||||| ||||||||||||  | |||| ||||| 
seq2  GTGGTCTGTG-TCAGTAAGTGTGGCTCTTCTCCCAAGCCTGAGACAGACC  1092

seq1  AAAGAGACCTTGAGTGCTTGCCA-CAATGG-ACTTAAGGACCCAGGTGGA  1145
       |||||||| |||||||||| || |||||| ||||||||| | |||||| 
seq2  TAAGAGACC-TGAGTGCTTGGCACCAATGGAACTTAAGGA-CAAGGTGGG  1140

seq1  GCCCTCTCCTTG-CTGCAC-CTGC-AATTTCCT  1175
       ||||||||||| |||||| |||| ||||||||
seq2  ACCCTCTCCTTGCCTGCACTCTGCAAATTTCCT  1173


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