BAC Information

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BAC

Clone NameB6Ng01-238N05
Chromosome11 (Build37)
Map Location 14,573,873 - 14,721,581
singlet/doubletdoublet
Overlap geneLOC100042542, LOC100041673
Upstream geneLOC432535, 1700046C09Rik, 1700054H16Rik
Downstream geneLOC432537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238N05.bB6Ng01-238N05.g
ACCGA049420GA049421
length1,036978
definitionB6Ng01-238N05.b B6Ng01-238N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,720,545 - 14,721,581)(14,573,873 - 14,574,846)
sequence
gaattcattttgtaagtgtttcattgaggtttctcatttcgttcataagg
gaaattggtctataatctttttcctttgttgagactttatgtttttgaat
gtcaaaataactgtggcccaaaacaccatgtaagaaacatacatgaaccc
atatgtgtgtttccataatgtccgaatttattaaataacaataaattgat
aaggtgttctggtttataaagtatgaatctgccaagtaatcacactttct
ttgatattctggtggaagctaatggaatttcttttatttcaatctcagtt
actaatattaactctcttattaaatgtcacacggtcaagggtaaatatct
ctgtttatatgtatatatgctattcaaataaaaggtaaatagtctaacca
gaattaaagaggtttattatgaggaggttgaaagaaaagaatctaggttg
atctgacaatggacccaaactatttcacggaaggagttgagagtatttat
tgagaatgaagctactgcaaggtaaaggtgtaaaactgtgtatgagcaag
aatggtaggttcaggtccaaacaagtgagtaaatgaataggaagatggct
gccaacaaaattgctttcacagtgggggctgacctgagtttcccccaggg
acagttgacagttctctaataacctatccttgaatcactcgtgaggtaag
acatacagatctgtgataggctatgccagagttactgttatacattttca
tgggtttagtatactccaggactctggggaccaatttcttcgttctaatt
atgatacactcatacataaaatagcgacacactctaaatgtgtataacca
tattgattttgtaaggggaccacttttcgtctcccagaaccaagtcagtg
atatgtctgttcaacaatgggtggagtttgtagttataaatataggcata
ttgcccttccaactccaaaataggttcaaagttgcttgtaaatggaattc
cttcaggtctgaaaactgctgttttaccataatata
gaattctttccagtcctgtttggttctatcttctggttggaccacaaatg
tttcaaagtgtgtttacatgtgtgtgtgtgtgttaaaaataattttcaac
catcactctaaatttatatttgtatcaagatcctgattgtctttctgtga
tcatattgctttatttagttcaatttcttcatgttgtatcttggttgtta
tatttctcaccatgcatagattaatttactttgttatatacattaattta
ctgatttcttcattaaaataacatacatccatgttcttataggagatata
ctgtgatcttttgaaaaagaatatctcttaatagtgcatgaagttaaaat
tgaaattagaaatagtatatgtattagctactgttttttgatgctgtgtc
aaaacactgtgagaaagtatcttaaggatggtaggatgtacttatattct
gcttgaaagaacaggaatgtatagctctattctcctttgtatctatagtc
aagaagcagcaagcaagaaatagttgttctcagtttgtttttgcttttta
ttcagcaaggacttagcaaaaagattgaagctacctccatctaagatggg
tcattcgactttattaggcaatattgaccatggcagtggatgatcatgag
ttagcaaagtgaaatataagaattccagggatgtgaatcttactcatatg
cctctgtatatagcatgtatatgattgtagaagtttgaataggaatggct
acatgtgtttgacttcttggtacttaggatggtactccttgagaggaatt
aggagttattattgacttctgaatttgggagaaaatttttgatgaagctt
tccattcaaagattagggtactcccatggctcatcttccttgctgccttt
ggatacaggaagtctgaaactcttcaactacttactcaagaactcattgg
tttcatgacccttaatgaaaaatgaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_14720545_14721581
seq2: B6Ng01-238N05.b_44_1079 (reverse)

seq1  TATATTAT-GTAAAACAGCAGTTTTCAGACCTGAAGG-ATTCCATTTTTA  48
      |||||||| |||||||||||||||||||||||||||| ||||||  ||||
seq2  TATATTATGGTAAAACAGCAGTTTTCAGACCTGAAGGAATTCCA--TTTA  48

seq1  CAAGCAACTTTTGACCCTATTTT-GAGTTTGAAGGGCAAATATGCCTATA  97
      |||||||| ||||| |||||||| ||||| ||||||| ||||||||||||
seq2  CAAGCAAC-TTTGAACCTATTTTGGAGTTGGAAGGGC-AATATGCCTATA  96

seq1  TTTATAACTACAAACTCCACCATTTGTTGAACAGACATATCACTGACTTG  147
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  TTTATAACTACAAACTCCACCCATTGTTGAACAGACATATCACTGACTTG  146

seq1  TTTCTGGGAGACGAAAAGTGGTCCCC-TACAAATT--AAAAGGGTATACA  194
       ||||||||||||||||||||||||| |||||| |  | | || ||||||
seq2  GTTCTGGGAGACGAAAAGTGGTCCCCTTACAAAATCAATATGGTTATACA  196

seq1  CATCTATAGTGTGTAGCTATTTTATATATGAGTGTATTAAAATTATAATA  244
      ||| || ||||||| |||||||||| ||||||||||| | ||||| ||  
seq2  CATTTAGAGTGTGTCGCTATTTTATGTATGAGTGTATCATAATTAGAACG  246

seq1  GAGAAATTAGTCCCCAGAGTTTATTGAGTATACTAAACAAATGAAAGTGT  294
       ||||||| |||||||||| |  | |||||||||||||  |||||| |||
seq2  AAGAAATTGGTCCCCAGAG-TCCTGGAGTATACTAAACCCATGAAAATGT  295

seq1  ATAACACTTACCCTGGCATAGCCTATCACAGATCTGTATCTCTTACTTCA  344
      |||||| | || ||||||||||||||||||||||||||| |||||| |||
seq2  ATAACAGTAACTCTGGCATAGCCTATCACAGATCTGTATGTCTTACCTCA  345

seq1  TGAGTGATTCAAGGATAGGTTATTAGAGAACTCTCAACTGTCCCTGGGCT  394
       ||||||||||||||||||||||||||||||| |||||||||||||||  
seq2  CGAGTGATTCAAGGATAGGTTATTAGAGAACTGTCAACTGTCCCTGGG-G  394

seq1  TAAACTCAGCTCAGCCCCCACTGTGAAAGCAATTTTGTTGGCAGCCATCT  444
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCAGGTCAGCCCCCACTGTGAAAGCAATTTTGTTGGCAGCCATCT  444

seq1  TCCTATTCATTTACTCACTTGTTTGGACCTGAACCTACCATTCTTGCTCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTCATTTACTCACTTGTTTGGACCTGAACCTACCATTCTTGCTCA  494

seq1  TACACAGTTTTACACCTTTACCTTGCAGTAGCTTCATTCTCAATAAATAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTTTTACACCTTTACCTTGCAGTAGCTTCATTCTCAATAAATAC  544

seq1  TCTCAACTCCTTCCCTGAAATAGTTTGGGTCCATTGTCAGATCAACCTAG  594
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTCAACTCCTTCCGTGAAATAGTTTGGGTCCATTGTCAGATCAACCTAG  594

seq1  ATTCTTTTCTTTCAACCTCCTCATAATAAACCTCTTTAATTCTGGTTAGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTCTTTCAACCTCCTCATAATAAACCTCTTTAATTCTGGTTAGA  644

seq1  CTATTTACCTTTTATTTGAATAGCATATATACATATAAACAGAGATATTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTACCTTTTATTTGAATAGCATATATACATATAAACAGAGATATTT  694

seq1  ACCCTTGACTGTGTGACATTTAATAAGAGAGTTAATATTAGTAACTGAGA  744
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGACCGTGTGACATTTAATAAGAGAGTTAATATTAGTAACTGAGA  744

seq1  TTGAAATAAAAGAAATTCCATTAGCTTCCACCAGAATATCAAAGAAAGTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAAAAGAAATTCCATTAGCTTCCACCAGAATATCAAAGAAAGTG  794

seq1  TGATTACTTGGCAGATTCATACTTTATAAACCAGAACACCTTATCAATTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACTTGGCAGATTCATACTTTATAAACCAGAACACCTTATCAATTT  844

seq1  ATTGTTATTTAATAAATTCTGACATTATGGAAACACACATATGTGTTCAT  894
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  ATTGTTATTTAATAAATTCGGACATTATGGAAACACACATATGGGTTCAT  894

seq1  GTATGTTTCTTACATGGTGTTTTGGGCCACAGTTATTCTGACATTCAAAA  944
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTATGTTTCTTACATGGTGTTTTGGGCCACAGTTATTTTGACATTCAAAA  944

seq1  ACATAAAGTCTCAACAAAGGAAAAAGATTATAGACCAATTTCCCTTATGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAGTCTCAACAAAGGAAAAAGATTATAGACCAATTTCCCTTATGA  994

seq1  ATAGAAATGAGAAACCTCAATGAAACACTTACAAAATGAATTC  1037
      |  ||||||||||||||||||||||||||||||||||||||||
seq2  A-CGAAATGAGAAACCTCAATGAAACACTTACAAAATGAATTC  1036

seq1: chr11_14573873_14574846
seq2: B6Ng01-238N05.g_67_1044

seq1  GAATTCTTTCCAGTCCTGTTTGGTTCTATCTTCTGGTTGGACCACAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCAGTCCTGTTTGGTTCTATCTTCTGGTTGGACCACAAATG  50

seq1  TTTCAAAGTGTGTTTACATGTGTGTGTGTGTGTTAAAAATAATTTTCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGTGTGTTTACATGTGTGTGTGTGTGTTAAAAATAATTTTCAAC  100

seq1  CATCACTCTAAATTTATATTTGTATCAGGATCCTGATTGTCTTTCTGTGA  150
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CATCACTCTAAATTTATATTTGTATCAAGATCCTGATTGTCTTTCTGTGA  150

seq1  TCATATTGCTTTATTTAGTTCAATTTCTTCATGTTGTATCTTGGTTGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTGCTTTATTTAGTTCAATTTCTTCATGTTGTATCTTGGTTGTTA  200

seq1  TATTTCTCAGCATGCATAGATTAATTTACTTTGTTATATACATTAATTTA  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCACCATGCATAGATTAATTTACTTTGTTATATACATTAATTTA  250

seq1  CTGATTTCTTCATTAAAATAACATACATCCATGTTCTTATAGGAGATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCTTCATTAAAATAACATACATCCATGTTCTTATAGGAGATATA  300

seq1  CTGTGATCTTTTGAAAAAGAATATCTCTTAATAGTGCATGAAGTTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCTTTTGAAAAAGAATATCTCTTAATAGTGCATGAAGTTAAAAT  350

seq1  TGAAATTAGAAATAGTATATGTATTAGCTACTGTTTTTTGATGCTGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTAGAAATAGTATATGTATTAGCTACTGTTTTTTGATGCTGTGTC  400

seq1  AAAACACTGTGAGAAAGTATCTTAAGGATGGTAGGATGTACTTATATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTGTGAGAAAGTATCTTAAGGATGGTAGGATGTACTTATATTCT  450

seq1  GCTTGAAAGAACAGGAATGTATAGCTCTATTCTCCTTTGTATCTATAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAAGAACAGGAATGTATAGCTCTATTCTCCTTTGTATCTATAGTC  500

seq1  AAGAAGCAGCAAGCAAGAAATAGTTGTTCTCAGTTTGTTTTTGCTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCAGCAAGCAAGAAATAGTTGTTCTCAGTTTGTTTTTGCTTTTTA  550

seq1  TTCAGCAAGGACTTAGCAAAAAGATTGAAGCTACCTCCATCTAAGATGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAAGGACTTAGCAAAAAGATTGAAGCTACCTCCATCTAAGATGGG  600

seq1  TCATTCGACTTTATTAGGCAATATTGACCATGGCAGTGGATGATCATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCGACTTTATTAGGCAATATTGACCATGGCAGTGGATGATCATGAG  650

seq1  TTAGCAAATTGAAATATAAGAATTCCAGGGATGTGAATCTTACTCATATG  700
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAAGTGAAATATAAGAATTCCAGGGATGTGAATCTTACTCATATG  700

seq1  CCTCTGTATAATAGCATGTATATGATTGTAGAGGTTTGAATAGGAATGGC  750
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  CCTCTGTAT-ATAGCATGTATATGATTGTAGAAGTTTGAATAGGAATGGC  749

seq1  TACATGTGTTTGAATACTTGGTACTTAGGGATGGTACTACTTGAGAGGAA  800
      ||||||||||||| | ||||||||||| |||||||||| |||||||||||
seq2  TACATGTGTTTGACTTCTTGGTACTTA-GGATGGTACTCCTTGAGAGGAA  798

seq1  TTAGGAGTTATTATTGACTTGTTGAATTTGGGAGAAAATTTTTGATGAGG  850
      ||||||||||||||||||||  |||||||||||||||||||||||||| |
seq2  TTAGGAGTTATTATTGACTT-CTGAATTTGGGAGAAAATTTTTGATGAAG  847

seq1  CTTTCCAGTTTCAAAAGTATTAGGG-AGTCCCAATGTCTCTCTTTTCTTG  899
      |||||||  ||||||   ||||||| | |||| ||| |||   || ||||
seq2  CTTTCCA--TTCAAA--GATTAGGGTACTCCC-ATGGCTCATCTTCCTTG  892

seq1  CTGCCTTTGGATACA-GAAG--TAGAACTC-TCAACTACTT-CTCAAGAA  944
      ||||||||||||||| ||||  |  ||||| |||||||||| ||||||||
seq2  CTGCCTTTGGATACAGGAAGTCTGAAACTCTTCAACTACTTACTCAAGAA  942

seq1  C-CATTG--TTC-TGA-CCTTAATG-AAAATGAACT  974
      | |||||  ||| ||| |||||||| ||||||||||
seq2  CTCATTGGTTTCATGACCCTTAATGAAAAATGAACT  978