BAC Information

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BAC

Clone NameB6Ng01-239J24
Chromosome11 (Build37)
Map Location 96,627,296 - 96,775,704
singlet/doubletdoublet
Overlap geneSnx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3
Upstream geneEG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1
Downstream geneAtad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239J24.bB6Ng01-239J24.g
ACCGA049999GA050000
length8771,049
definitionB6Ng01-239J24.b B6Ng01-239J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,774,830 - 96,775,704)(96,627,296 - 96,628,324)
sequence
gaattccagagggcaacctggtctacatagtgaattccagaacagccagg
gctatgtagaaagaacctgccttaaataaataaataaataaataaataaa
ccgtcagcaccctccagccttcggggcgcggtaggtgttaggggctttgc
agttgttcgttcatccggtacttggcataaccaccttgtgttttccattg
tggcggttaatcccagccccgaggaaatggaagttgagcagcaccctctg
tcaacacgaaagatataattacacacagaagcaaaatattatggagactt
tagaatggtcaaaagtggcactttcatgttgggaccaatttaaagttttc
ctttatccctgtgttaaggcggttgctctgtaaaactcatacggggataa
agccggggcgccagggactgtttagcccaagcgactctctgcgtctgtct
gtcttttcatctcttcccattcctctctcttagctaatacaaagactttt
gttcaatatccagtatgtggcacttgaaccagtgaattcccagtgggcag
ttagtggtatggcgggctgtggtgaccggctggttctcgtgcagactggc
tggtggacagaagacactgtaacctaaaatggcagagcctggtgctgacc
atccgggaaaaaatcaacactgccatccaggacatgccagagagccagga
gattgcccagctgctctctggatcctgtgagtgatctggaaccccccccc
ccccttcctggagtcaccagggtggcccccagagtgagaatttttttttc
tgaatcgcagatgctggttggcagcagagtacaggggtcagccacctgca
gtagcccaaggggagaggaagggaggt
gaattctaagcaagagttgtggtatacaaacaaactcacaaacactgagc
taatttaatctcctccggtaggagatggagcctctgagcaaagctaccgg
agtcacctaggactcagtagtagggacctaaggccttagcagccagcaaa
ccagggacggtgcgaggttggtttactgctgttcactttcttactatata
gcccaggatgtcctggaagaccctctgtagcccaggctagcctgaaacac
cctctgtagcccaggctagctttaaactcacaacaatcctcttgcctcaa
ccgctccagtgctggaattataggtgtgtaccaccacaccttagtactac
agacctcagaaagtacctcctacaaagatcagacatactgggtataggaa
tgacacagacaccctccaggtcctggtcaagccatttgaaaactgccttt
tacaagccttactcaagccagcttcctcagggagaaatggagtatgacgc
tcgcctaccctgctgactcttatcaaatcaaacaacttctatcaaactat
tctgacaccagaactttccttccttcatcccccccaccccccgcccgcca
tctgaaataatgttcctctcagtcctcaccagtccactactgaccacagt
gcagacgagggagctgagtaggtttgggtcgcagacgtagctgtgactaa
agcaggccccaaacttgcctcagagctcagatcaaaataaagaatacttt
gattcctccacacaactcagtgggccgctccccacggctagtgactcatc
tctcacacagaagctatccagctggagtggctggacttgggcacacactg
ggcagagaaaaatacgaaaggactccagcactgcctggaatgaaaaggaa
ttttcaacgattgcttgctgttttttctggtaacgtgggccccatgccta
ttaggaaacgctctctcccctcgggacattctttctgcagcccaaccacc
ttaactcaagcacaaagactgagatgagaaaggcgccttgggccctcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96774830_96775704
seq2: B6Ng01-239J24.b_47_923 (reverse)

seq1  ACCTCCCTTCCTCTCCCCTT-GGCTACTGCAGGTGGCTGACCCCTGTACT  49
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACCTCCCTTCCTCTCCCCTTGGGCTACTGCAGGTGGCTGACCCCTGTACT  50

seq1  CTGCTGCCAACCAGCATCTGCGATTCAG-AAAAAAAATTCTCACTCTGGG  98
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGCTGCCAACCAGCATCTGCGATTCAGAAAAAAAAATTCTCACTCTGGG  100

seq1  GGCCACCCTGGTGACTCCAGGAAGGGGGGGGGGGGGTTCCAGATCACTCA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCCTGGTGACTCCAGGAAGGGGGGGGGGGGGTTCCAGATCACTCA  150

seq1  CAGGATCCAGAGAGCAGCTGGGCAATCTCCTGGCTCTCTGGCATGTCCTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCCAGAGAGCAGCTGGGCAATCTCCTGGCTCTCTGGCATGTCCTG  200

seq1  GATGGCAGTGTTGATTTTTTCCCGGATGGTCAGCACCAGGCTCTGCCATT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAGTGTTGATTTTTTCCCGGATGGTCAGCACCAGGCTCTGCCATT  250

seq1  TTAGGTTACAGTGTCTTCTGTCCACCAGCCAGTCTGCACGAGAACCAGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTACAGTGTCTTCTGTCCACCAGCCAGTCTGCACGAGAACCAGCC  300

seq1  GGTCACCACAGCCCGCCATACCACTAACTGCCCACTGGGAATTCACTGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCACAGCCCGCCATACCACTAACTGCCCACTGGGAATTCACTGGT  350

seq1  TCAAGTGCCACATACTGGATATTGAACAAAAGTCTTTGTATTAGCTAAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGCCACATACTGGATATTGAACAAAAGTCTTTGTATTAGCTAAGA  400

seq1  GAGAGGAATGGGAAGAGATGAAAAGACAGACAGACGCAGAGAGTCGCTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAATGGGAAGAGATGAAAAGACAGACAGACGCAGAGAGTCGCTTG  450

seq1  GGCTAAACAGTCCCTGGCGCCCCGGCTTTATCCCCGTATGAGTTTTACAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAACAGTCCCTGGCGCCCCGGCTTTATCCCCGTATGAGTTTTACAG  500

seq1  AGCAACCGCCTTAACACAGGGATAAAGGAAAACTTTAAATTGGTCCCAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCGCCTTAACACAGGGATAAAGGAAAACTTTAAATTGGTCCCAAC  550

seq1  ATGAAAGTGCCACTTTTGACCATTCTAAAGTCTCCATAATATTTTGCTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGTGCCACTTTTGACCATTCTAAAGTCTCCATAATATTTTGCTTC  600

seq1  TGTGTGTAATTATATCTTTCGTGTTGACAGAGGGTGCTGCTCAACTTCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTAATTATATCTTTCGTGTTGACAGAGGGTGCTGCTCAACTTCCA  650

seq1  TTTCCTCGGGGCTGGGATTAACCGCCACAATGGAAAACACAAGGTGGTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCGGGGCTGGGATTAACCGCCACAATGGAAAACACAAGGTGGTTA  700

seq1  TGCCAAGTACCGGATGAACGAACAACTGCAAAGCCCCTAACACCTACCGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGTACCGGATGAACGAACAACTGCAAAGCCCCTAACACCTACCGC  750

seq1  GCCCCGAAGGCTGGAGGGTGCTGACGGTTTATTTATTTATTTATTTATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGAAGGCTGGAGGGTGCTGACGGTTTATTTATTTATTTATTTATTT  800

seq1  ATTTAAGGCAGGTTCTTTCTACATAGCCCTGGCTGTTCTGGAATTCACTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGCAGGTTCTTTCTACATAGCCCTGGCTGTTCTGGAATTCACTA  850

seq1  TGTAGACCAGGTTGCCCTCTGGAATTC  875
      |||||||||||||||||||||||||||
seq2  TGTAGACCAGGTTGCCCTCTGGAATTC  877

seq1: chr11_96627296_96628324
seq2: B6Ng01-239J24.g_67_1115

seq1  GAATTCTAAGCAAGAGTTGTGGTATACAAACAAACTCACAAACACTGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGCAAGAGTTGTGGTATACAAACAAACTCACAAACACTGAGC  50

seq1  TAATTTAATCTCCTCCGGTAGGAGATGGAGCCTCTGAGCAAAGCTACCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAATCTCCTCCGGTAGGAGATGGAGCCTCTGAGCAAAGCTACCGG  100

seq1  AGTCACCTAGGACTCAGTAGTAGGGACCTAAGGCCTTAGCAGCCAGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCTAGGACTCAGTAGTAGGGACCTAAGGCCTTAGCAGCCAGCAAA  150

seq1  CCAGGGACGGTGCGAGGTTGGTTTACTGCTGTTCACTTTCTTACTATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGACGGTGCGAGGTTGGTTTACTGCTGTTCACTTTCTTACTATATA  200

seq1  GCCCAGGATGTCCTGGAAGACCCTCTGTAGCCCAGGCTAGCCTGAAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGATGTCCTGGAAGACCCTCTGTAGCCCAGGCTAGCCTGAAACAC  250

seq1  CCTCTGTAGCCCAGGCTAGCTTTAAACTCACAACAATCCTCTTGCCTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTAGCCCAGGCTAGCTTTAAACTCACAACAATCCTCTTGCCTCAA  300

seq1  CCGCTCCAGTGCTGGAATTATAGGTGTGTACCACCACACCTTAGTACTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCCAGTGCTGGAATTATAGGTGTGTACCACCACACCTTAGTACTAC  350

seq1  AGACCTCAGAAAGTACCTCCTACAAAGATCAGACATACTGGGTATAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCAGAAAGTACCTCCTACAAAGATCAGACATACTGGGTATAGGAA  400

seq1  TGACACAGACACCCTCCAGGTCCTGGTCAAGCCATTTGAAAACTGCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAGACACCCTCCAGGTCCTGGTCAAGCCATTTGAAAACTGCCTTT  450

seq1  TACAAGCCTTACTCAAGCCAGCTTCCTCAGGGAGAAATGGAGTATGACGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCCTTACTCAAGCCAGCTTCCTCAGGGAGAAATGGAGTATGACGC  500

seq1  TCGCCTACCCTGCTGACTCTTATCAAATCAAACAACTTCTATCAAACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTACCCTGCTGACTCTTATCAAATCAAACAACTTCTATCAAACTAT  550

seq1  TCTGACACCAGAACTTTCCTTCCTTCATCCCCCCCACCCCCCGCCCGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACACCAGAACTTTCCTTCCTTCATCCCCCCCACCCCCCGCCCGCCA  600

seq1  TCTGAAATAATGTTCCTCTCAGTCCTCACCAGTCCACTACTGACCACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATAATGTTCCTCTCAGTCCTCACCAGTCCACTACTGACCACAGT  650

seq1  GCAGACGAGGGAGCTGAGTAGGTTTGGGTCGCAGACGTAGCTGTGACTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACGAGGGAGCTGAGTAGGTTTGGGTCGCAGACGTAGCTGTGACTAA  700

seq1  AGCAGGCCCCAAACTTGCCTCAGAGCTCAGATCAAAATAAAGAATACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCCCCAAACTTGCCTCAGAGCTCAGATCAAAATAAAGAATACTTT  750

seq1  GATTCCTCCACACAACTCAGTGGGCCGCTCCCCACGGCTAGTGACTCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTCCACACAACTCAGTGGGCCGCTCCCCACGGCTAGTGACTCATC  800

seq1  TCTCACACAGAAGCTATCCAGCTGGAGTGGCTGGACTTGGGCACACACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACACAGAAGCTATCCAGCTGGAGTGGCTGGACTTGGGCACACACTG  850

seq1  GGCAGAGAAAAATACGAAAGGACTCCAGCACTGCCTGG-ATGAAAAGGAA  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGCAGAGAAAAATACGAAAGGACTCCAGCACTGCCTGGAATGAAAAGGAA  900

seq1  TTTTCAACGA-TGCTTGCTG-TTTTTCTGGT-ACGTGGG-CCCATG-CTA  944
      |||||||||| ||||||||| |||||||||| ||||||| |||||| |||
seq2  TTTTCAACGATTGCTTGCTGTTTTTTCTGGTAACGTGGGCCCCATGCCTA  950

seq1  TTAGG-AACGCTCTCT-CCCTC-GGACAT--CTTCTGCAGCC--AACACC  987
      ||||| |||||||||| ||||| ||||||   ||||||||||  | ||||
seq2  TTAGGAAACGCTCTCTCCCCTCGGGACATTCTTTCTGCAGCCCAACCACC  1000

seq1  -TAACTC-AGCAC-AAGACTGAGATGAG-AAGGCGCCT---GGCCTCAC  1029
       |||||| ||||| |||||||||||||| |||||||||   | ||||||
seq2  TTAACTCAAGCACAAAGACTGAGATGAGAAAGGCGCCTTGGGCCCTCAC  1049