BAC Information

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BAC

Clone NameB6Ng01-239M18
Chromosome11 (Build37)
Map Location 8,476,962 - 8,478,095
singlet/doubletsinglet
Overlap geneTns3
Upstream geneLOC665380
Downstream geneLOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239M18.bB6Ng01-239M18.g
ACCGA050127GA050128
length1,148860
definitionB6Ng01-239M18.b B6Ng01-239M18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ctgaaatatcagaactctctttgatgtggagacctgtctgtggacaaagc
agtctgcaaaggttggagtgcttaataccgagttgacatgtgatgactgt
tttgaagaaaagcacacacagacacacacacaagcagagacaaagaagac
aaagacagagaggcagaaagaaagacatgccatataacatttcagtccaa
aaactacctgcaagacagtagtctcaccataatagaacttatagcttctt
accacccggaaacgtggcagctgccctaacacagtgactcactgagccac
gcagaacttatagtgaagttagggtcagctgacccctactgcccagccta
tcacatcagcatgtgcacattcaatcatgcacagtccccaataattgatt
taaaaaaaaaaagtaacagccatgagatagatatattcactacactataa
catctgtagagtatattcctacttacttatttttaagattttcaaactaa
ttttctaccacatgtaaattttgactgcatgtatatatgtgcaataggta
tgtacggtgcctaaggaggccaaaagaagatgttggatgccttagagttg
gagttatgggtggttctgagccaccatgtgggtgttgggaatcaatctca
tgtcctctacaagaggagccagtgctcttaaccactgagccatctctcca
ggccccttactcattttttgaacttaactgtaaaacagccttgggcaggt
tttcaggggctctggctgccacaggaggtgagagttcctgcctgccttaa
aaggctttctatggggacaacaggctgaggcagaagatcatggcaatgat
gtcctgacccaggtagcctcagctaatgtgtgtgtttgtgtgttagttgc
taaccaaagaagcttaaaccctttttttttaaattaagcatcatctatgc
cattatgggttggctactccatagcagtttgtgttaaaaccaccacctta
gcagggtaactctcagaatgtgcttctaatcaaaggaaatgcatggttgc
aattcctttcatttggctgcccagctaggtcacgaagcaccaaccattcc
tccactgaaacagaaggagactgaaggctcaatcatgaagacaggatc

gaattcagtatgggtatcacttggtgcagagaactactgcaggggagggt
ccagcttgaccatttctgagtttcctgtgggttatacccggtttaaaaag
gaggttggtatctaattttggctaaaaaccaaaaatatctacggctctgc
ctcccctccccaaaagataccaagagccacaggtgtgggtcgtgacaaca
cccatgggaggaatcgggtcaatgtccacccaaaccaaggttaaaagccc
actcatctacggatgagaaaaacttttgatcacctcagttaagcgttgcc
ttatttaacttaattaataggggggagagaggttggagaccgtactgtct
tcactgcctcccaccccaaaataaaaagccaattggccttgtactacgga
gccggtcataccccttttctctgtttcccgcctgtcatccaaaaatgcaa
aggaatatcaactcagtgttattcttaataaagtgtatttcaaatttgtt
cagtcaaacttagccaggattccaacgccctacttaaaattcaactaggg
ggctggtgagatggctcagtgagtaagactgctcttcctaaggtccagag
tttcaaatcccagcaaccacatggtggctcacaaccatctgtaacaagat
ctgactcccttttctggagtgtctgaagacagcttacagtgtacttacat
ataataataaataaaatgttgaaaaaatattttaaaaaattcaactagga
aagctaccctatttcagtattaattagcataataaagttcggatttctgc
agctccaggctttttcgttagttgttttactaggaatagaaaggacctgt
ctcagttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_8476962_8478095
seq2: B6Ng01-239M18.b_55_1202

seq1  CTGAAATATCAGAACTCTCTTTGATGTGGAGACCTGTCTGTGGACAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATATCAGAACTCTCTTTGATGTGGAGACCTGTCTGTGGACAAAGC  50

seq1  AGTCTGCAAAGGTTGGAGTGCTTAATACCGAGTTGACATGTGATGACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCAAAGGTTGGAGTGCTTAATACCGAGTTGACATGTGATGACTGT  100

seq1  TTTGAAGAAAAGCACACACAGACACACACACAAGCAGAGACAAAGAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGAAAAGCACACACAGACACACACACAAGCAGAGACAAAGAAGAC  150

seq1  AAAGACAGAGAGGCAGAAAGAAAGACATGCCATATAACATTTCAGTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGAGAGGCAGAAAGAAAGACATGCCATATAACATTTCAGTCCAA  200

seq1  AAACTACCTGCAAGACAGTAGTCTCACCATAATAGAACTTATAGCTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACCTGCAAGACAGTAGTCTCACCATAATAGAACTTATAGCTTCTT  250

seq1  ACCACCCGGAAACGTGGCAGCTGCCCTAACACAGTGACTCACTGAGCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCGGAAACGTGGCAGCTGCCCTAACACAGTGACTCACTGAGCCAC  300

seq1  GCAGAACTTATAGTGAAGTTAGGGTCAGCTGACCCCTACTGCCCAGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACTTATAGTGAAGTTAGGGTCAGCTGACCCCTACTGCCCAGCCTA  350

seq1  TCACATCAGCATGTGCACATTCAATCATGCACAGTCCCCAATAATTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCAGCATGTGCACATTCAATCATGCACAGTCCCCAATAATTGATT  400

seq1  TAAAAAAAAAAAGTAACAGCCATGAGATAGATATATTCACTACACTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAGTAACAGCCATGAGATAGATATATTCACTACACTATAA  450

seq1  CATCTGTAGAGTATATTCCTACTTACTTATTTTTAAGATTTTCAAACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTAGAGTATATTCCTACTTACTTATTTTTAAGATTTTCAAACTAA  500

seq1  TTTTCTACCACATGTAAATTTTGACTGCATGTATATATGTGCAATAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACCACATGTAAATTTTGACTGCATGTATATATGTGCAATAGGTA  550

seq1  TGTACGGTGCCTAAGGAGGCCAAAAGAAGATGTTGGATGCCTTAGAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACGGTGCCTAAGGAGGCCAAAAGAAGATGTTGGATGCCTTAGAGTTG  600

seq1  GAGTTATGGGTGGTTCTGAGCCACCATGTGGGTGTTGGGAATCAATCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATGGGTGGTTCTGAGCCACCATGTGGGTGTTGGGAATCAATCTCA  650

seq1  TGTCCTCTACAAGAGGAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTACAAGAGGAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCA  700

seq1  GGCCCCTTACTCATTTTTTGAACTTAACTGTAAAACAGCCTTGGGCAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTTACTCATTTTTTGAACTTAACTGTAAAACAGCCTTGGGCAGGT  750

seq1  TTTCAGGGGCTCTGGCTGCCACAGGAGGTGAGAGTTCCTGCCTGCCTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGGCTCTGGCTGCCACAGGAGGTGAGAGTTCCTGCCTGCCTTAA  800

seq1  AAGGCTTTCTATGGGGACAACAGGCTGAGGCAGAAGATCATGGCAATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTTCTATGGGGACAACAGGCTGAGGCAGAAGATCATGGCAATGAT  850

seq1  GTCCTGACCCAGGTAGCCTCAGCTAATGTGTGTGTTTGTGTGTTAGTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGACCCAGGTAGCCTCAGCTAATGTGTGTGTTTGTGTGTTAGTTGC  900

seq1  TAACCAAAGAAGCTTAAAACCTTTTTTTTTAAATTAAGCATCATCTATGC  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAACCAAAGAAGCTTAAACCCTTTTTTTTTAAATTAAGCATCATCTATGC  950

seq1  CATTAT-GGTTGGCTACTCCATAGCAGTTTGTGTAAACACCACC----TA  995
      |||||| ||||||||||||||||||||||||||| || ||||||    ||
seq2  CATTATGGGTTGGCTACTCCATAGCAGTTTGTGTTAAAACCACCACCTTA  1000

seq1  GCAGGGTAACTCTCAGAATGTGCTTCT-ATCAA--GGAATGCAT-GTTGC  1041
      ||||||||||||||||||||||||||| |||||  | ||||||| |||||
seq2  GCAGGGTAACTCTCAGAATGTGCTTCTAATCAAAGGAAATGCATGGTTGC  1050

seq1  -ATTTCTTTCATTTGGCTG-CCAGCTAGGTCACGGAGCACC-ACCA-TCC  1087
       ||| |||||||||||||| |||||||||||||| |||||| |||| |||
seq2  AATTCCTTTCATTTGGCTGCCCAGCTAGGTCACGAAGCACCAACCATTCC  1100

seq1  T-CACTGAAAACAGAAGGAGACTG-AGGCTC-ATCATGGAGACCAGGATC  1134
      | ||||| |||||||||||||||| |||||| |||||| ||| |||||||
seq2  TCCACTG-AAACAGAAGGAGACTGAAGGCTCAATCATGAAGA-CAGGATC  1148


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