BAC Information

Click to search

BAC

Clone NameB6Ng01-240D10
Chromosome11 (Build37)
Map Location 105,967,161 - 106,076,685
singlet/doubletdoublet
Overlap geneMap3k3, Limd2, 2610019A05Rik, 2610204L23Rik
Upstream gene4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44
Downstream geneDdx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240D10.bB6Ng01-240D10.g
ACCGA050440GA050441
length1,161151
definitionB6Ng01-240D10.b B6Ng01-240D10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,075,523 - 106,076,685)(105,967,161 - 105,967,311)
sequence
gaattccattagaaacacttctgtgttgtgaacactcctggtatagactg
aaatggccagactgtcaaattgacagggatatgtagttacttctgcttgg
acagggagccactaaagcagacgctctttgttctttgaggcagtgcctct
tactcttgcaggctggcctaatatcactatgtaggacaaggcagggcagg
ccactggaactactatacctgccaccacccccacccccttaagtataggg
tctcgctatgtagtcctggctagccttgaatttggacatgtgcctgcatt
tgactcctgagtactgggatacctcacccaccctaccggccccttggagc
ttttgagacaggggtctcctgaagcctggactcactatgtagaagaagat
ggccttggactctcggcctcagtctcccaagtgctgggattacaggagta
aaccgccacacccaatcttatatggtcctgctatcaatttagacagtctc
aacagcttgagttacatccccagcctccctttgtaacattttaaaaatta
cattaatttatttatttgggtcaggcatatataaagggggaggtattata
tcgctgtgcatggagaggtcagaagacaacttctagtttaatcatcagtc
gtaatacacataccctatcagtaataaaactcttacacgcatctatcctt
taggctgaatttcaatgcttaaaaacagatgtttattgtttttgttttgt
tttttagataattaaagatataggactggtgtttagattagggagcagaa
ttgaaaatgtagcataaatgcttttgttggttggaaatatttttgcattg
tactctgtgatttcatacaaaatcagtaccttcagtctgagcccgtggag
taacgtggtagttggactgatgcatcttcttttctgtacttaagtgttca
cacttgcggtgatctgagcaagtgtgtgtttcaaggagaacgtgtctgca
aggccaaacacagatctacagttgggtctgtagtaaatggctgtcttctt
ttagtactgatggtgagcccaccttattgtatgttcacagattgacagag
ttacacctggcttctttcagcctgcgtgctttagttatggatattggaac
tattacatatc
actatgtagatcagtctagccttgaactcatagagatccctctgcctctg
cctctgcctcctgcctcctcctgcctcctgggttctgagactaaaagtgg
ctacttcttctaatggacagggcacatggaggagaggggaggggaggggg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106075523_106076685
seq2: B6Ng01-240D10.b_44_1204 (reverse)

seq1  GATATGTAAATAGTTACAAAATAATCCATAAATAAAAACCACGCAGACTG  50
      ||||||| ||||||| |||    |||||||| |  ||| ||||||| || 
seq2  GATATGT-AATAGTTCCAA---TATCCATAACT--AAAGCACGCAGGCT-  43

seq1  GAAAGAAGCCA-GTGTAACTCTTGTCATTCTTGTG-ACATAC-ATAAGGT  97
      ||||||||||| ||||||||| ||||| || |||| |||||| |||||||
seq2  GAAAGAAGCCAGGTGTAACTC-TGTCAATC-TGTGAACATACAATAAGGT  91

seq1  TGGCTTCACCATCAGTACTAAAAG-AGACAGCCATTTACCTACAGA-CCA  145
       ||| ||||||||||||||||||| ||||||||||||| ||||||| |||
seq2  GGGC-TCACCATCAGTACTAAAAGAAGACAGCCATTTA-CTACAGACCCA  139

seq1  ACTGTAGATCTGTGTTTGGCC-TGCAGACACGTTCTCCT--GAACACACA  192
      ||||||||||||||||||||| |||||||||||||||||   ||||||||
seq2  ACTGTAGATCTGTGTTTGGCCTTGCAGACACGTTCTCCTTGAAACACACA  189

seq1  CTTGCTCAGATCACCGCAAGTGTGAACACTTAAGTACAG-AAAGAAGATG  241
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTGCTCAGATCACCGCAAGTGTGAACACTTAAGTACAGAAAAGAAGATG  239

seq1  CATCAGTCCAACTACCACGTTACTCCACGGGCTCAGACTGAAGGTACTGA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCCAACTACCACGTTACTCCACGGGCTCAGACTGAAGGTACTGA  289

seq1  TTTTGTATGAAATCACAGAGTACAATGCAAAAATATTTCCAACCAACAAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATGAAATCACAGAGTACAATGCAAAAATATTTCCAACCAACAAA  339

seq1  AGCATTTATGCTACATTTTCAATTCTGCTCCCTAATCTAAACACCAGTCC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTATGCTACATTTTCAATTCTGCTCCCTAATCTAAACACCAGTCC  389

seq1  TATATCTTTAATTATCTAAAAAACAAAACAAAAACAATAAACATCTGTTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTTAATTATCTAAAAAACAAAACAAAAACAATAAACATCTGTTT  439

seq1  TTAAGCATTGAAATTCAGCCTAAAGGATAGATGCGTGTAAGAGTTTTATT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCATTGAAATTCAGCCTAAAGGATAGATGCGTGTAAGAGTTTTATT  489

seq1  ACTGATAGGGTATGTGTATTACGACTGATGATTAAACTAGAAGTTGTCTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATAGGGTATGTGTATTACGACTGATGATTAAACTAGAAGTTGTCTT  539

seq1  CTGACCTCTCCATGCACAGCGATATAATACCTCCCCCTTTATATATGCCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCTCCATGCACAGCGATATAATACCTCCCCCTTTATATATGCCT  589

seq1  GACCCAAATAAATAAATTAATGTAATTTTTAAAATGTTACAAAGGGAGGC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAAATAAATAAATTAATGTAATTTTTAAAATGTTACAAAGGGAGGC  639

seq1  TGGGGATGTAACTCAAGCTGTTGAGACTGTCTAAATTGATAGCAGGACCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATGTAACTCAAGCTGTTGAGACTGTCTAAATTGATAGCAGGACCA  689

seq1  TATAAGATTGGGTGTGGCGGTTTACTCCTGTAATCCCAGCACTTGGGAGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGATTGGGTGTGGCGGTTTACTCCTGTAATCCCAGCACTTGGGAGA  739

seq1  CTGAGGCCGAGAGTCCAAGGCCATCTTCTTCTACATAGTGAGTCCAGGCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCCGAGAGTCCAAGGCCATCTTCTTCTACATAGTGAGTCCAGGCT  789

seq1  TCAGGAGACCCCTGTCTCAAAAGCTCCAAGGGGCCGGTAGGGTGGGTGAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGACCCCTGTCTCAAAAGCTCCAAGGGGCCGGTAGGGTGGGTGAG  839

seq1  GTATCCCAGTACTCAGGAGTCAAATGCAGGCACATGTCCAAATTCAAGGC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCCAGTACTCAGGAGTCAAATGCAGGCACATGTCCAAATTCAAGGC  889

seq1  TAGCCAGGACTACATAGCGAGACCCTATACTTAAGGGGGTGGGGGTGGTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGGACTACATAGCGAGACCCTATACTTAAGGGGGTGGGGGTGGTG  939

seq1  GCAGGTATAGTAGTTCCAGTGGCCTGCCCTGCCTTGTCCTACATAGTGAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTATAGTAGTTCCAGTGGCCTGCCCTGCCTTGTCCTACATAGTGAT  989

seq1  ATTAGGCCAGCCTGCAAGAGTAAGAGGCACTGCCTCAAAGAACAAAGAGC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCCAGCCTGCAAGAGTAAGAGGCACTGCCTCAAAGAACAAAGAGC  1039

seq1  GTCTGCTTTAGTGGCTCCCTGTCCAAGCAGAAGTAACTACATATCCCTGT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTTTAGTGGCTCCCTGTCCAAGCAGAAGTAACTACATATCCCTGT  1089

seq1  CAATTTGACAGTCTGGCCATTTCAGTCTATACCAGGAGTGTTCACAACAC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGACAGTCTGGCCATTTCAGTCTATACCAGGAGTGTTCACAACAC  1139

seq1  AGAAGTGTTTCTAATGGAATTC  1163
      ||||||||||||||||||||||
seq2  AGAAGTGTTTCTAATGGAATTC  1161

seq1: chr11_105967161_105967311
seq2: B6Ng01-240D10.g_71_221

seq1  ACTATGTAGATCAGTCTAGCCTTGAACTCATAGAGATCCCTCTGCCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTAGATCAGTCTAGCCTTGAACTCATAGAGATCCCTCTGCCTCTG  50

seq1  CCTCTGCCTCCTGCCTCCTCCTGCCTCCTGGGTTCTGAGACTAAAAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCCTGCCTCCTCCTGCCTCCTGGGTTCTGAGACTAAAAGTGG  100

seq1  CTACTTCTTCTAATGGACAGGGCACATGGAGGAGAGGGGAGGGGAGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCTTCTAATGGACAGGGCACATGGAGGAGAGGGGAGGGGAGGGGG  150

seq1  A  151
      |
seq2  A  151