BAC Information

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BAC

Clone NameB6Ng01-240H12
Chromosome11 (Build37)
Map Location 63,726,179 - 63,840,771
singlet/doubletdoublet
Overlap geneHs3st3b1, Cox10
Upstream geneCdrt4, Tekt3, Pmp22, LOC433423, LOC100042799, LOC100041690, LOC654442, LOC668297
Downstream gene2810001G20Rik, EG544785, Hs3st3a1, LOC626959, Elac2, AU040829
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240H12.bB6Ng01-240H12.g
ACCGA050632GA050633
length1,213982
definitionB6Ng01-240H12.b B6Ng01-240H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,726,179 - 63,727,395)(63,839,812 - 63,840,771)
sequence
gaattctattagagaagtaaaaaagtaaaaattaaaaacaaaaatttctc
actgaaactgactcgggtaaggctaagcagacctgtcccaggatggctac
aaagattcaaaatgcaaatgaattgaagtggatgaaaacagatggcaaat
ctcattcagaatgtctgtctgtgaggaacaacctctttcagaatgtctga
ctgtgaggaacaacctctttcagaatgtctgtctgtgaggaacaacctct
ttcagaatgtctatgaggaaaaacctcattcagaatgtctgtctgtgagg
aacaacctcattcagaatgtctgtctgtgaggaacaacctcattcagaat
gtctgtctgtgaggaacaactctttcagaatgtctgtctgtgaggaacaa
cctcattcagaatgtctgtctgtgaggaacaacctctttcagaatgtctg
tctgtgaggaacaacctcattcagaatgtctgtctgtgaggaataactct
ttcagaatgtctgtttgtgaagaacaacctctttcagaatgtctgtttgt
gaggaacaacctcatttagaatgtctgtctgtgaggaacggggctgtgga
aattgcactatgaaagtatattcttgatatggaacagggcatattgctct
gtcctatgccaggttacaaatgaaggaaacaggctctttatatgatgaca
agggataggggcagagatggacaacactgtcttccatgcccagtacagct
gagaggggctacccagcgggagggactctttgccatagtagcaccatatc
tggactctgtttgcggtccacatcaacactggcggcatgtttacaggctg
ccaaactcctataaaaagccgggctggtggcagaggcccttattccagcg
ctgtgattcgaaccagggcctgagtgaagacctgtatgcccaaactccat
tgctgaagagagggtcttgggagaatgctatgtagaagtgagggtcgtgc
tctgtgcatcacacttgtccagaaaataaacaaagtgctccagaaaaatg
aagtcttatcttttttttatcacagtgctcgctcaataaaatacggcctt
gttgatcagtgagggagggctaaatacaatataagagtgcattattccac
tggaaccttgtgaacacacgcctctatccaagtactcagctgtccgaagg
actcccaaggtag

gaattcctttaaaatttatttatttatttatttacttacttacttagagt
ggagggcatgtggcatgtcatgtagggagtgtggggtgtgtcaagaggac
tgccacctggagttggttctagagtcaggctagcaggccggtgggtaagg
cctcccgcccccgccccccccccctccagctgtctcaccagccccaagtg
tccctttccctccctcccctcctagttctgttttcaaaaaggaagttctg
agcttttcactcaagtccttacttgtatgttatctgccagcttttgctaa
atagaattttcaagaatgctaaagtttatgctttttacactaaagcagat
ttgcttggtaatgatggtttcttatccattcctactctagcttgaagttg
tagtgtggttgtggaagtatggtcatgtctgatgctgacgaaggtcagtg
ggccaagggagtggggagcaaacccaactgactgctaggaccgctgggca
ttcccactgggtacaggaggagtggtgagatggtaagcagtgtgtctctt
cccagaggaagtctgtgctgttgtgggtacataagagcagttctgattgg
tgtaatttttttttttctcattagacatactaattttctgatagtgggaa
aaataatttccagttagatgcactattagcagagtaacacgtggctggag
tttacctgatagaggctgctgaccttttctcagtctacactggtttctct
tcagtaaggggagtttccatattctgccctgcctcttgtgtagtgcgccc
atgctatctctttatggattcaacacctataggccaaagggtcacctggt
cccgtttcaccctgttggttaaattttcttgtgccttccagttcttgcac
aggggaggtaaatttttctaatttcttactgtgtccagtttgcaagtgac
aacctaccccccaccctccgggttgtggcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_63726179_63727395
seq2: B6Ng01-240H12.b_41_1252

seq1  GAATTCTATTAGAGAAGTAAAAAAGTAAAAATTAAAAACAAAAATTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTAGAGAAGTAAAAAAGTAAAAATTAAAAACAAAAATTTCTC  50

seq1  ACTGAAACTGACTCGGGTAAGGCTAAGCAGACCTGTCCCAGGATGGCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACTGACTCGGGTAAGGCTAAGCAGACCTGTCCCAGGATGGCTAC  100

seq1  AAAGATTCAAAATGCAAATGAATTGAAGTGGATGAAAACAGATGGCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCAAAATGCAAATGAATTGAAGTGGATGAAAACAGATGGCAAAT  150

seq1  CTCATTCAGAATGTCTGTCTGTGAGGAACAACCTCTTTCAGAATGTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCAGAATGTCTGTCTGTGAGGAACAACCTCTTTCAGAATGTCTGA  200

seq1  CTGTGAGGAACAACCTCTTTCAGAATGTCTGTCTGTGAGGAACAACCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGGAACAACCTCTTTCAGAATGTCTGTCTGTGAGGAACAACCTCT  250

seq1  TTCAGAATGTCTATGAGGAAAAACCTCATTCAGAATGTCTGTCTGTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATGTCTATGAGGAAAAACCTCATTCAGAATGTCTGTCTGTGAGG  300

seq1  AACAACCTCATTCAGAATGTCTGTCTGTGAGGAACAACCTCATTCAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCTCATTCAGAATGTCTGTCTGTGAGGAACAACCTCATTCAGAAT  350

seq1  GTCTGTCTGTGAGGAACAACTCTTTCAGAATGTCTGTCTGTGAGGAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTGTGAGGAACAACTCTTTCAGAATGTCTGTCTGTGAGGAACAA  400

seq1  CCTCATTCAGAATGTCTGTCTGTGAGGAACAACCTCTTTCAGAATGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTCAGAATGTCTGTCTGTGAGGAACAACCTCTTTCAGAATGTCTG  450

seq1  TCTGTGAGGAACAACCTCATTCAGAATGTCTGTCTGTGAGGAATAACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAGGAACAACCTCATTCAGAATGTCTGTCTGTGAGGAATAACTCT  500

seq1  TTCAGAATGTCTGTTTGTGAAGAACAACCTCTTTCAGAATGTCTGTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATGTCTGTTTGTGAAGAACAACCTCTTTCAGAATGTCTGTTTGT  550

seq1  GAGGAACAACCTCATTTAGAATGTCTGTCTGTGAGGAACGGGGCTGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACAACCTCATTTAGAATGTCTGTCTGTGAGGAACGGGGCTGTGGA  600

seq1  AATTGCACTATGAAAGTATATTCTTGATATGGAACAGGGCATATTGCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCACTATGAAAGTATATTCTTGATATGGAACAGGGCATATTGCTCT  650

seq1  GTCCTATGCCAGGTTACAAATGAAGGAAACAGGCTCTTTATATGATGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATGCCAGGTTACAAATGAAGGAAACAGGCTCTTTATATGATGACA  700

seq1  AGGGATAGGGGCAGAGATGGACAACACTGTCTTCCATGCCCAGTACAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATAGGGGCAGAGATGGACAACACTGTCTTCCATGCCCAGTACAGCT  750

seq1  GAGAGGGGCTACCCAGCGGGAGGGACTCTTTGCCATAGTAGCACCATATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGCTACCCAGCGGGAGGGACTCTTTGCCATAGTAGCACCATATC  800

seq1  TGGACTCTGTTTGCGGTCCACATCAACACTGGCGGCATGTTTACAGGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCTGTTTGCGGTCCACATCAACACTGGCGGCATGTTTACAGGCTG  850

seq1  CCAAACTCCTATAAAAAGCCGGGCTGGTGGCAGAGGCCCTTATTCCAGCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTCCTATAAAAAGCCGGGCTGGTGGCAGAGGCCCTTATTCCAGCG  900

seq1  CTGTGATTCGAACCAGGGCCTGAGTGAAGACCTGTATGCCCAAACTCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATTCGAACCAGGGCCTGAGTGAAGACCTGTATGCCCAAACTCCAT  950

seq1  TGCTGAAGAGAGGGTCTTGGGAGAATGCTATGTAGAAGTGAGGGTCCGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGCTGAAGAGAGGGTCTTGGGAGAATGCTATGTAGAAGTGAGGGT-CGTG  999

seq1  CTCTGTGCATCACACTTGTTCCAGAAAATAAACAAAGTGCTCCAG-AAAA  1049
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  CTCTGTGCATCACACTTG-TCCAGAAAATAAACAAAGTGCTCCAGAAAAA  1048

seq1  TGAAGTCTTATC-TTTTTTTATCACAAGTGCTCGCTCAAT-AAATACGCC  1097
      |||||||||||| |||||||||||| |||||||||||||| ||||||| |
seq2  TGAAGTCTTATCTTTTTTTTATCAC-AGTGCTCGCTCAATAAAATACGGC  1097

seq1  CTTGTCTGATCAGTTGAGGGAGGGGCTTAAATACAATTTATAAGAGTGCA  1147
      ||||| ||||||| ||||||||||   |||||||||  ||||||||||||
seq2  CTTGT-TGATCAG-TGAGGGAGGG--CTAAATACAA--TATAAGAGTGCA  1141

seq1  TTATT-CACT-GAACCTGGTG-ACACACGCCTCTAATCCAAATTACTCAG  1194
      ||||| |||| |||||| ||| |||||||||||| |||| || |||||||
seq2  TTATTCCACTGGAACCTTGTGAACACACGCCTCT-ATCC-AAGTACTCAG  1189

seq1  CTGCCAGAAGGACCCCCAAGGTA  1217
      ||| | ||||||| |||||||||
seq2  CTGTCCGAAGGACTCCCAAGGTA  1212


seq1: chr11_63839812_63840771
seq2: B6Ng01-240H12.g_62_1043 (reverse)

seq1  AAGG-CACAGCCCGG-GGGT-GGGGGTAGGTTGCTCCTTGCAAACTGGAC  47
      |||| |||| ||||| |||| ||||||||||||   ||||||||||||||
seq2  AAGGCCACAACCCGGAGGGTGGGGGGTAGGTTGTCACTTGCAAACTGGAC  50

seq1  AAAGTAAGAAATTAG--AAATTTAACT-CACTGTGCAAGAACTAGGAGGC  94
      | |||||||||||||  ||||||| || | ||||||||||||| | ||||
seq2  ACAGTAAGAAATTAGAAAAATTTACCTCCCCTGTGCAAGAACTGGAAGGC  100

seq1  ACAAGAAA--TTAACC-ACAGGGTGAAACGGGACCA-GTGACCCTTT-GC  139
      ||||||||  |||||| ||||||||||||||||||| |||||||||| ||
seq2  ACAAGAAAATTTAACCAACAGGGTGAAACGGGACCAGGTGACCCTTTGGC  150

seq1  CTATA-GTGTTG-ATCC--TAAGAG-TAGCATGGGCGCACTACACAAGAG  184
      ||||| |||||| ||||   ||||| ||||||||||||||||||||||||
seq2  CTATAGGTGTTGAATCCATAAAGAGATAGCATGGGCGCACTACACAAGAG  200

seq1  GCA-GGCAGAATATGGGAACTCCCCTTACTGAAGAG-AACCAGTGTAGAC  232
      ||| |||||||||||| ||||||||||||||||||| |||||||||||||
seq2  GCAGGGCAGAATATGGAAACTCCCCTTACTGAAGAGAAACCAGTGTAGAC  250

seq1  TGAG-AAAGGTCAGCAGCCTCTATCAGGTAAACTCCAGCCACGTGTTACT  281
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAGGTCAGCAGCCTCTATCAGGTAAACTCCAGCCACGTGTTACT  300

seq1  CTGCTAATAGTGCATCTAACTGGAAATTA-TTTTCCCACTATCAGAAAAC  330
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  CTGCTAATAGTGCATCTAACTGGAAATTATTTTTCCCACTATCAGAAAAT  350

seq1  TAGTATGTCTAATGAG--AAAAAAAAATTACACCAATCAGAACTGCTCTT  378
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  TAGTATGTCTAATGAGAAAAAAAAAAATTACACCAATCAGAACTGCTCTT  400

seq1  ATGTACCCACAACAGCACAGACTTCCTCTGGGAAGAGACACACTGCTTAC  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCCACAACAGCACAGACTTCCTCTGGGAAGAGACACACTGCTTAC  450

seq1  CATCTCACCACTCCTCCTGTACCCAGTGGGAATGCCCAGCGGTCCTAGCA  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCACCACTCCTCCTGTACCCAGTGGGAATGCCCAGCGGTCCTAGCA  500

seq1  GTCAGTTGGGTTTGCTCCCCACTCCCTTGGCCCACTGACCTTCGTCAGCA  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTGGGTTTGCTCCCCACTCCCTTGGCCCACTGACCTTCGTCAGCA  550

seq1  TCAGACATGACCATACTTCCACAACCACACTACAACTTCAAGCTAGAGTA  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACATGACCATACTTCCACAACCACACTACAACTTCAAGCTAGAGTA  600

seq1  GGAATGGATAAGAAACCATCATTACCAAGCAAATCTGCTTTAGTGTAAAA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGATAAGAAACCATCATTACCAAGCAAATCTGCTTTAGTGTAAAA  650

seq1  AGCATAAACTTTAGCATTCTTGAAAATTCTATTTAGCAAAAGCTGGCAGA  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAACTTTAGCATTCTTGAAAATTCTATTTAGCAAAAGCTGGCAGA  700

seq1  TAACATACAAGTAAGGACTTGAGTGAAAAGCTCAGAACTTCCTTTTTGAA  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATACAAGTAAGGACTTGAGTGAAAAGCTCAGAACTTCCTTTTTGAA  750

seq1  AACAGAACTAGGAGGGGAGGGAGGGAAAGGGACACTTGGGGCTGGTGAGA  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACTAGGAGGGGAGGGAGGGAAAGGGACACTTGGGGCTGGTGAGA  800

seq1  CAGCTGGAGGGGGGGGGGGCGGGGGCGGGAGGCCTTACCCACCGGCCTGC  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGAGGGGGGGGGGGCGGGGGCGGGAGGCCTTACCCACCGGCCTGC  850

seq1  TAGCCTGACTCTAGAACCAACTCCAGGTGGCAGTCCTCTTGACACACCCC  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGACTCTAGAACCAACTCCAGGTGGCAGTCCTCTTGACACACCCC  900

seq1  ACACTCCCTACATGACATGCCACATGCCCTCCACTCTAAGTAAGTAAGTA  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCCTACATGACATGCCACATGCCCTCCACTCTAAGTAAGTAAGTA  950

seq1  AATAAATAAATAAATAAATTTTAAAGGAATTC  960
      ||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATAAATTTTAAAGGAATTC  982


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