BAC Information

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BAC

Clone NameB6Ng01-240J17
Chromosome11 (Build37)
Map Location 66,328,284 - 66,329,477
singlet/doubletsinglet
Overlap geneGm879
Upstream geneMap2k4, Zkscan6, Dnahc9
Downstream geneLOC668323, A530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240J17.bB6Ng01-240J17.g
ACCGA050734GA050735
length1,1901,174
definitionB6Ng01-240J17.b B6Ng01-240J17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaacagcgtttgaagagagttgagcaacactcattccatagcaa
tttgggaaggtgatacgggagagaattggcagacacatacagggtagaac
tgtgtgtgtgtgcacacagctgggcacaatactgaagattctacctagga
cagtgcgtgggaagcaagtacttcattacaggccatctttgactttttta
gtttgagatagggtctcaaactaaattgctcaagtccaggtaggccttga
acttgtggtcttctggtttctgcttccagagtagacgaaaatgggcctaa
ggcgggaaataacatgtttactgttccttgagccattgtgctgttttaaa
tgagattttaaaataataaaataaaactgatctttagaagctactttatt
gagtagagatgaacaattggtccttagcatgccaattgtctacctggctg
gctcagacaatctgtccttctctgtagcgtatgtgccctgcacagagttt
gcagtcttgtctgagcgattaatcggctcatcgtagttttctatcaaaca
gagaaaggaaaaaacaactttgtccaggtccaatttggataaattttgaa
ttagtggcatctgaatcaatgctatttaatgaagtcacagctgaatggat
tcaagaagaagagctggaggaggttagagttagaaagacaagagagaagt
gaccaggaatcaagagaaggagaaatgggaaagcagtggtggcagaggag
acatggaaaatcacaaaaagatacattttaatgatgtgacttgaaagaca
agaaagaaacatgatggattctttgcttaaatgctccaggttacagagaa
gagatactcactgcatggacatgtgtcctggctgtgagtcatctaagcac
aaatgacctgtactggctcctgaagcctatgggctgttaatcccaggaca
cttcagcagctttcttgccatgggaataagtcagagacaggcgactagga
gcatagcaggagagcagtgctccgtggtctcttcggttctgaagcaacat
tgggcatctgggactagcagctgccaatcatcgtggaatggcttgtgtga
acctcattcatctccaagaacagtcagtgtgaagtccactctcttccctg
gctgacatctgaaccttgactccgaactgggaaccaacaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaagagctaagggatcttcaaccctat
aggtggacaacattatgactaaccagtacccttgagctctgactctagct
gcatttgtatcaaagatgctagtcgtcatcactggaagaaagtccatgaa
cccgcagacttgggtgccgtacaggcatgcagtctaacggggggaagctt
ggtcgtggactcagcgcacactcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_66328284_66329477
seq2: B6Ng01-240J17.b_42_1231

seq1  GAATTCCAACAGCGTTTGAAGAGAGTTGAGCAACACTCATTCCATAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACAGCGTTTGAAGAGAGTTGAGCAACACTCATTCCATAGCAA  50

seq1  TTTGGGAAGGTGATACGGGAGAGAATTGGCAGACACATACAGGGTAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAAGGTGATACGGGAGAGAATTGGCAGACACATACAGGGTAGAAC  100

seq1  TGTGTGTGTGTGCACACAGCTGGGCACAATACTGAAGATTCTACCTAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGCACACAGCTGGGCACAATACTGAAGATTCTACCTAGGA  150

seq1  CAGTGCGTGGGAAGCAAGTACTTCATTACAGGCCATCTTTGACTTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCGTGGGAAGCAAGTACTTCATTACAGGCCATCTTTGACTTTTTTA  200

seq1  GTTTGAGATAGGGTCTCAAACTAAATTGCTCAAGTCCAGGTAGGCCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGATAGGGTCTCAAACTAAATTGCTCAAGTCCAGGTAGGCCTTGA  250

seq1  ACTTGTGGTCTTCTGGTTTCTGCTTCCAGAGTAGACGAAAATGGGCCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGGTCTTCTGGTTTCTGCTTCCAGAGTAGACGAAAATGGGCCTAA  300

seq1  GGCGGGAAATAACATGTTTACTGTTCCTTGAGCCATTGTGCTGTTTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGAAATAACATGTTTACTGTTCCTTGAGCCATTGTGCTGTTTTAAA  350

seq1  TGAGATTTTAAAATAATAAAATAAAACTGATCTTTAGAAGCTACTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTTAAAATAATAAAATAAAACTGATCTTTAGAAGCTACTTTATT  400

seq1  GAGTAGAGATGAACAATTGGTCCTTAGCATGCCAATTGTCTACCTGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAGATGAACAATTGGTCCTTAGCATGCCAATTGTCTACCTGGCTG  450

seq1  GCTCAGACAATCTGTCCTTCTCTGTAGCGTATGTGCCCTGCACAGAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGACAATCTGTCCTTCTCTGTAGCGTATGTGCCCTGCACAGAGTTT  500

seq1  GCAGTCTTGTCTGAGCGATTAATCGGCTCATCGTAGTTTTCTATCAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTTGTCTGAGCGATTAATCGGCTCATCGTAGTTTTCTATCAAACA  550

seq1  GAGAAAGGAAAAAACAACTTTGTCCAGGTCCAATTTGGATAAATTTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGAAAAAACAACTTTGTCCAGGTCCAATTTGGATAAATTTTGAA  600

seq1  TTAGTGGCATCTGAATCAATGCTATTTAATGAAGTCACAGCTGAATGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGCATCTGAATCAATGCTATTTAATGAAGTCACAGCTGAATGGAT  650

seq1  TCAAGAAGAAGAGCTGGAGGAGGTTAGAGTTAGAAAGACAAGAGAGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGAAGAGCTGGAGGAGGTTAGAGTTAGAAAGACAAGAGAGAAGT  700

seq1  GACCAGGAATCAAGAGAAGGAGAAATGGGAAAGCAGTGGTGGCAGAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGAATCAAGAGAAGGAGAAATGGGAAAGCAGTGGTGGCAGAGGAG  750

seq1  ACATGGAAAATCACAAAAAGATACATTTTAATGATGTGACTTGAAAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAAAATCACAAAAAGATACATTTTAATGATGTGACTTGAAAGACA  800

seq1  AGAAAGAAACATGATGGATTCTTTGCTTAAATGCTCCAGGTTACAGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAACATGATGGATTCTTTGCTTAAATGCTCCAGGTTACAGAGAA  850

seq1  GAGATACTCACTGCATGGACATGTGTCCTGGCTGTGAGTCATCTAAGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACTCACTGCATGGACATGTGTCCTGGCTGTGAGTCATCTAAGCAC  900

seq1  AAATGACCTGTACTGGCTCCTGAAGCCTATGGGCTGTTAATCCCAGGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCTGTACTGGCTCCTGAAGCCTATGGGCTGTTAATCCCAGGACA  950

seq1  CTTCAGGCAGCTTTCTTGCCATGGGAATAAGTCAGAGACAGGCGACTAGG  1000
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCA-GCAGCTTTCTTGCCATGGGAATAAGTCAGAGACAGGCGACTAGG  999

seq1  AGCATAGCAGGAGAGCAGTGCTCCGTGGTCCTCCTCCGGTTCTGAAGCAA  1050
      ||||||||||||||||||||||||||||||   || ||||||||||||||
seq2  AGCATAGCAGGAGAGCAGTGCTCCGTGGTC--TCTTCGGTTCTGAAGCAA  1047

seq1  CATT-GGCATCT-GGACTAGCAGCCTGCCAATCATTCCGTGG-ATGGCTT  1097
      |||| ||||||| |||||||||| |||||||||||  ||||| |||||||
seq2  CATTGGGCATCTGGGACTAGCAG-CTGCCAATCAT--CGTGGAATGGCTT  1094

seq1  GGTGTGAACCTCATTCATCCTCCAAAAGAACAGTCAGTGTGAAGTCACAA  1147
       ||||||||||||||||| ||||  ||||||||||||||||||||  | |
seq2  -GTGTGAACCTCATTCAT-CTCC--AAGAACAGTCAGTGTGAAGT--CCA  1138

seq1  CTCTCT--CCT-GCTGACATCTG-ACCCTGACTCCAGAACTGGGAA--AA  1191
      ||||||  ||| ||||||||||| ||| ||||||| ||||||||||  ||
seq2  CTCTCTTCCCTGGCTGACATCTGAACCTTGACTCC-GAACTGGGAACCAA  1187

seq1  CAA  1194
      |||
seq2  CAA  1190