BAC Information

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BAC

Clone NameB6Ng01-241A03
Chromosome11 (Build37)
Map Location 73,592,429 - 73,593,580
singlet/doubletsinglet
Overlap genenone
Upstream geneCyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389
Downstream geneOlfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241A03.bB6Ng01-241A03.g
ACCGA051031GA051032
length1,1571,151
definitionB6Ng01-241A03.b B6Ng01-241A03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctttaccccatttttttaatggtgttttttgaa
tttctagagtctagcttcttgagctctttgtatatattggatattagtcc
cctatcagatttaggattggtaaaaatccattcccaatctgttagtggcc
tttgtgttctattgacagtatcttttgccttacagaagctttgcaatttt
atgagttcccatttgtcaattcttgatcttacagcacaaaccattgctgt
tatattcaggaatttcccccctgtgcccatatctttgaggctttcccaca
ctttcttctctataagtttcagtgtctctagttttatgtggaggtctttg
atccactgagaattgagctttgtacaaggagataagaatggatcaattcg
tattcttctacatgatagcctccagttgtgccagcaccatttgttgaaaa
tgctgtctttccactggatggttttagctcccttgtcaaagatcaattaa
ccttaggtgtgtggattcacttctgggtcttcaattctatcccattgttc
tacctgtttgtcactgtaccagtaccatgcagttttttttttttttttta
atcacaattgctctttaggtcaggcatggtgattccaccagaggatcttt
tattgttcagaatagtcctaggttttttgttattccagacgaatttgcaa
attgccctttctaactcagtgaacaattgagttggaattttgatggggat
tgcattgaatctgtagattgcattaggcagaatagccattttgactatat
taatccttacaatccatgagcatgggagaaatcttctgagatcttcttca
atttctttcttcagagacttgaagttcttgtcatacagatctttcacttc
cttagttagagtcacaccaaggtaatttatattttttgtgactatttgtg
aaggtgtgtttccctatgtctttttcatcctgttatcttgtgtagagaaa
agccactgatttgtttgagtaaattttatatcagctagtgcacctggatc
ttgttatctgctaagggtctcctgctgaattttagtaactttatatgcat
catacgttgccaaaaagttgacttcgcaattctcctgatccattttgggt
ggaatgc
gaattccaggtgagctgaatgaataataactgctagaactatttctttgg
acagtcttatctgctattcaggtaaaaactgtgagatttacagctgaaga
agtaaagtccattgggtcagcaacagcaactatcacaagtgatctttggt
ttgtagtcttttcacataagcctacataaaccatgggccccactcagtca
cagaatacaaataattctgagacacttggtacacaatttcccttatatta
ctctaagtttctgtttttctattaacttctcacattatgaaaggtaagag
ttacttcactctgatataatgttaataaataaattaaatgttaaaaacac
agtaaaacaccttcatagaaataccttgagctgtaatttgaccaaaatgg
attttaagccctataccagtttctataaaaactgtcatgttaggtatgga
tagttgaatatgaactcaagggagggattaaaattaattgacacttatga
agtgttcattgtatatattttttctccatcattatcagtggaatcatatg
tatagtgaaatcatatgaagcataaaaatattagtcattattagtattat
taaaaagagcattgcattttgtacacccaaatactttccataaatacaca
atcacatcttaaagctaatcacagactatcaaaatttaatgttgaggggg
tacttttggtgacttcatattttgaggagaatgaagaagagtaattattt
ggatttaatataaatttcttccttacattttaggctatgtctcaggctac
agaatagccaggaaatcttcatgaatactgggttatgaacaggcatgacc
ttttcctgcaagaagtttacagtctgtcaacaatagctggtactgaatga
taagctatgaaatgagtacaagatggtatgagaccattgtagcagtctaa
ctatatagggatacaaagaaattataactcagtataactcaataattcaa
tgtcatattgtgaccataaaacgaacaagaataacacatagaggagaaga
tgtgataggttaaggaggattattagttagaatgatagaggtccaccaac
ttccattgactacagaactgctgaaagtaagtgcatttgtggccaatgtg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_73592429_73593580
seq2: B6Ng01-241A03.g_69_1219 (reverse)

seq1  TCACAT--GGCACATATGCACTTTACTCTTCAGCAGTTCTGTAGTCCAAA  48
      ||||||  | |||| |||||| ||||| ||||||||||||||||||  ||
seq2  TCACATTGGCCACAAATGCAC-TTACT-TTCAGCAGTTCTGTAGTC--AA  46

seq1  TTGAAGTTTGTG--ACTCTATCATTTCTAACTTAATATTCTCCTT-ACCT  95
      | |||||| |||   |||||||| |||||||| |  || |||||| ||||
seq2  TGGAAGTTGGTGGACCTCTATCA-TTCTAACTAATAATCCTCCTTAACCT  95

seq1  ATCACATCTTCTCCTCTATG-GTGTATCTTGTTCGTTTTATGGTTCCACA  144
      |||||||||||||||||||| ||   ||||||||||||||||||  ||||
seq2  ATCACATCTTCTCCTCTATGTGTTATTCTTGTTCGTTTTATGGT--CACA  143

seq1  ATATGACATTGAATTATTGAGTTATACTGAGTTATAATTTCTTTGTATCC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACATTGAATTATTGAGTTATACTGAGTTATAATTTCTTTGTATCC  193

seq1  CTATATAGTTAGACCTGCTACAATGGTCTCATACCATCTTGTACTCATTT  244
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTATATAGTTAGA-CTGCTACAATGGTCTCATACCATCTTGTACTCATTT  242

seq1  CATAGCTTATCATTCAGTACCAGCTATTGTTGACAGACTGTAAACTTCTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTTATCATTCAGTACCAGCTATTGTTGACAGACTGTAAACTTCTT  292

seq1  GCAGG-AAAGGTCATGCCTGTTCATAACCCAGTATTCATGAAGATTTCCT  343
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAAAGGTCATGCCTGTTCATAACCCAGTATTCATGAAGATTTCCT  342

seq1  GGCTATTCTGTAGCCTGAGACATAGCCTAAAATGTAAGGAAGAAATTTAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTCTGTAGCCTGAGACATAGCCTAAAATGTAAGGAAGAAATTTAT  392

seq1  ATTAAATCCAAATAATTACTCTTCTTCATTCTCCTCAAAATATGAAGTCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATCCAAATAATTACTCTTCTTCATTCTCCTCAAAATATGAAGTCA  442

seq1  CCAAAAGTACCCCCTCAACATTAAATTTTGATAGTCTGTGATTAGCTTTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGTACCCCCTCAACATTAAATTTTGATAGTCTGTGATTAGCTTTA  492

seq1  AGATGTGATTGTGTATTTATGGAAAGTATTTGGGTGTACAAAATGCAATG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGATTGTGTATTTATGGAAAGTATTTGGGTGTACAAAATGCAATG  542

seq1  CTCTTTTTAATAATACTAATAATGACTAATATTTTTATGCTTCATATGAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTAATAATACTAATAATGACTAATATTTTTATGCTTCATATGAT  592

seq1  TTCACTATACATATGATTCCACTGATAATGATGGAGAAAAAATATATACA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTATACATATGATTCCACTGATAATGATGGAGAAAAAATATATACA  642

seq1  ATGAACACTTCATAAGTGTCAATTAATTTTAATCCCTCCCTTGAGTTCAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACACTTCATAAGTGTCAATTAATTTTAATCCCTCCCTTGAGTTCAT  692

seq1  ATTCAACTATCCATACCTAACATGACAGTTTTTATAGAAACTGGTATAGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACTATCCATACCTAACATGACAGTTTTTATAGAAACTGGTATAGG  742

seq1  GCTTAAAATCCATTTTGGTCAAATTACAGCTCAAGGTATTTCTATGAAGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAATCCATTTTGGTCAAATTACAGCTCAAGGTATTTCTATGAAGG  792

seq1  TGTTTTACTGTGTTTTTAACATTTAATTTATTTATTAACATTATATCAGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACTGTGTTTTTAACATTTAATTTATTTATTAACATTATATCAGA  842

seq1  GTGAAGTAACTCTTACCTTTCATAATGTGAGAAGTTAATAGAAAAACAGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTAACTCTTACCTTTCATAATGTGAGAAGTTAATAGAAAAACAGA  892

seq1  AACTTAGAGTAATATAAGGGAAATTGTGTACCAAGTGTCTCAGAATTATT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGAGTAATATAAGGGAAATTGTGTACCAAGTGTCTCAGAATTATT  942

seq1  TGTATTCTGTGACTGAGTGGGGCCCATGGTTTATGTAGGCTTATGTGAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTGTGACTGAGTGGGGCCCATGGTTTATGTAGGCTTATGTGAAA  992

seq1  AGACTACAAACCAAAGATCACTTGTGATAGTTGCTGTTGCTGACCCAATG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACAAACCAAAGATCACTTGTGATAGTTGCTGTTGCTGACCCAATG  1042

seq1  GACTTTACTTCTTCAGCTGTAAATCTCACAGTTTTTACCTGAATAGCAGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTACTTCTTCAGCTGTAAATCTCACAGTTTTTACCTGAATAGCAGA  1092

seq1  TAAGACTGTCCAAAGAAATAGTTCTAGCAGTTATTATTCATTCAGCTCAC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTGTCCAAAGAAATAGTTCTAGCAGTTATTATTCATTCAGCTCAC  1142

seq1  CTGGAATTC  1152
      |||||||||
seq2  CTGGAATTC  1151