BAC Information

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BAC

Clone NameB6Ng01-241O05
Chromosome11 (Build37)
Map Location 59,190,208 - 59,292,999
singlet/doubletdoublet
Overlap gene1110031B06Rik, Jmjd4, BC050078, LOC432565
Upstream gene2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249
Downstream geneZkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241O05.bB6Ng01-241O05.g
ACCGA051689GA051690
length1,103901
definitionB6Ng01-241O05.b B6Ng01-241O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,190,208 - 59,191,324)(59,292,098 - 59,292,999)
sequence
gaattctaaggcttcagcaattaagattatcagtaaggtacagcctagaa
caaaaactaacaggggcagggagagacacgatggaattgtcttcatcaat
tcagatgttaaaacaaaactcagccaggcgtggtggtgcatgcctttaat
cccagcacttgggaggcagaagcgggtggatttctgagttcgaggccagc
ctggtttacaaagtgagttccaggacagccagggctatacagagaaaccc
tgtctcaaaaaaaaaacaaaaaaacaaaaaaacaaaaacaaaaaacaaaa
aacaaaaaaaccctccaagactagagatggtttcgtgattaagagctaat
gctgctcttccaggggacctgggtttaattcccagcacccatgttgtggc
tcacaaccatctgccacaccagtcccaagggacccaacccaataccctct
cccggcctctcctcaagcactgcacacacatgatacacacacatgataca
cacacatgatacacagacatgatacacacacatgatacacacacatgata
cacagacatgatacacagacatgcacacacatgatacacagacatacaca
cacatgatacacagacatacatgcaggcaaaacatctatacatattttaa
aaagaaagaaaagaaaaaaaaatcattaaaaaaatttaatcaggctagat
ggcttgtgaaaacagacagtattctttgcctttgggggctggggttctga
gattagaaggccagcattgcgctgtcaagctcctcgtggcttacagagtg
gaatctgctgctcacgtcctcacagcggcaaggctgcgagaactccgaag
ccccttctgtaaggacacgactgtcattcacatgcatcaccaccatcacc
cccaaggtgtcatcactcttcttggagtcagactccaagcctgaagggaa
ggaggcaacttcagtctattactgaatgaatccagacttagatctttaca
cagagcacacagcactcagagcacacactgtcagtgaaagtctgtgaaca
cagatctgctaggcgagatgtgatctcacccacaccttatacaggagctg
agc
gaattcaaatgtatataagtaaaaagataaatagcctcaaatacattata
tggtaagctctctctctctctctctcttctctctctctctctctctctct
ctctcacacacacacacacacacacacacacacacacacacatacacaca
cacacacaacagggtcttaccatgtagttttggataacctggaacacatt
gtatagaccagagtccacctgcctctgcctccaagtcctgggattaaagg
cacatgccaccatgcccagctgggacttttttttttcccccagagatttc
ctcccaggcaaaaccaggttcacagctttgctgaagaaaggatctcaggg
agaaccagtatgaaacacagttggatttactataaacagaaagagtggct
ggagagatggtgcagaggtgaagagcatttgatgctcttgcaaaggagtg
gggttcagttctcagtattcacactgtgcagttcacaaaatggttgtcac
ttcagttctggagggggtgtgcaggatctcttctggcctccctgagtact
gcatgcatgtggtgcatgttcacacacacatacatagaagggctggggag
gggctcagcagttaaaaagcactggctgttctttccagaggccctgagtt
caattcccagcactcacctggcaactcacaaccaaactgtaatgggatgt
gaaatcatggtatagtgtgtgggatgtatatacagacaaagaatccatat
ctacaaaatacatgagtaataagccttaaaaaatattctgtgttaaaaaa
aaacagatccaaccacaagaagtaacaaagaaaccccaaaatcaaacaaa
caaacaaaaaaaccctaaacttttagaaaaagtcttaaggggctggaaag
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_59190208_59191324
seq2: B6Ng01-241O05.b_46_1148

seq1  GAATTCTAAGGCTTCAGCAATTAAGATTATCAGTAAGGTACAGCCTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGGCTTCAGCAATTAAGATTATCAGTAAGGTACAGCCTAGAA  50

seq1  CAAAAACTAACAGGGGCAGGGAGAGACACGATGGAATTGTCTTCATCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACTAACAGGGGCAGGGAGAGACACGATGGAATTGTCTTCATCAAT  100

seq1  TCAGATGTTAAAACAAAACTCAGCCAGGCGTGGTGGTGCATGCCTTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGTTAAAACAAAACTCAGCCAGGCGTGGTGGTGCATGCCTTTAAT  150

seq1  CCCAGCACTTGGGAGGCAGAAGCGGGTGGATTTCTGAGTTCGAGGCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTTGGGAGGCAGAAGCGGGTGGATTTCTGAGTTCGAGGCCAGC  200

seq1  CTGGTTTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCC  250

seq1  TGTCTCAAAAAAAAAACAAAAAAACAAAAAAACAAAAACAAAAAACAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAAAAAAAAACAAAAAAACAAAAAAACAAAAACAAAAAACAAAA  300

seq1  AACAAAAAAACCCTCCAAGACTAGAGATGGTTTCGTGATTAAGAGCTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAACCCTCCAAGACTAGAGATGGTTTCGTGATTAAGAGCTAAT  350

seq1  GCTGCTCTTCCAGGGGACCTGGGTTTAATTCCCAGCACCCATGTTGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCTTCCAGGGGACCTGGGTTTAATTCCCAGCACCCATGTTGTGGC  400

seq1  TCACAACCATCTGCCACACCAGTCCCAAGGGACCCAACCCAATACCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCATCTGCCACACCAGTCCCAAGGGACCCAACCCAATACCCTCT  450

seq1  CCCGGCCTCTCCTCAAGCACTGCACACACATGATACACACACATGATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCCTCTCCTCAAGCACTGCACACACATGATACACACACATGATACA  500

seq1  CACACATGATACACAGACATGATACACACACATGATACACACACATGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGATACACAGACATGATACACACACATGATACACACACATGATA  550

seq1  CACAGACATGATACACAGACATGCACACACATGATACACAGACATACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACATGATACACAGACATGCACACACATGATACACAGACATACACA  600

seq1  CACATGATACACAGACATACATGCAGGCAAAACATCTATACATATTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGATACACAGACATACATGCAGGCAAAACATCTATACATATTTTAA  650

seq1  AAAGAAAGAAAAGAAAAAAAAATCATTAAAAAAATTTAATCAGGCTAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAAGAAAAAAAAATCATTAAAAAAATTTAATCAGGCTAGAT  700

seq1  GGCTTGTGAAAACAGACAGTATTCTTTGCCTTTGGGGGCTGGGGTTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTGAAAACAGACAGTATTCTTTGCCTTTGGGGGCTGGGGTTCTGA  750

seq1  GATTAGAAGGCCAGCATTGCGCTGTCAAGCTCCTCGTGGCTTACAGAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAAGGCCAGCATTGCGCTGTCAAGCTCCTCGTGGCTTACAGAGTG  800

seq1  GAATCTGCTGCTCACGTCCTCACAGCGGCAAGGCTGCGAGAACTCCGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGCTGCTCACGTCCTCACAGCGGCAAGGCTGCGAGAACTCCGAAG  850

seq1  CCCCTTCTGTAAGGACACGACTGTCATTCACATGCATCACCACCATCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCTGTAAGGACACGACTGTCATTCACATGCATCACCACCATCACC  900

seq1  CCCAAGGTGTCATCACTCTTCTTGGAGTCAAGACTCCAAGCCCTGAAGGG  950
      ||||||||||||||||||||||||||||| |||||||||| |||||| ||
seq2  CCCAAGGTGTCATCACTCTTCTTGGAGTC-AGACTCCAAG-CCTGAA-GG  947

seq1  GAAGGAGGCAAACTTCAGTCTATTACTGAAATGAATCCCAGACTTAGATC  1000
      ||||||||| |||||||||||||||||| ||||||| |||||||||||||
seq2  GAAGGAGGC-AACTTCAGTCTATTACTG-AATGAAT-CCAGACTTAGATC  994

seq1  TTTACACAGAGCACACAGCACTCAAGAGGCACACACTGTCAGTGAAAAGT  1050
      ||||||||||||||||||||||| ||| |||||||||||||||| |||||
seq2  TTTACACAGAGCACACAGCACTC-AGA-GCACACACTGTCAGTG-AAAGT  1041

seq1  CTGTTGGACACAGGATCTGCAGAGGGCGAGAATGTGATCTCACCACACCC  1100
      ||| || ||||| |||||||    |||||| ||||||||||||| ||| |
seq2  CTG-TGAACACA-GATCTGC--TAGGCGAG-ATGTGATCTCACC-CACAC  1085

seq1  TTTATACA-GAGCTGAGC  1117
       ||||||| |||||||||
seq2  CTTATACAGGAGCTGAGC  1103

seq1: chr11_59292098_59292999
seq2: B6Ng01-241O05.g_68_968 (reverse)

seq1  TCTCTCCAGCCCCTTAAGACTTTTTCTAAAGGTTTAGGGTTTTTTTTGTT  50
      ||| |||||||||||||||||||||||||| |||||||| ||||||||||
seq2  TCTTTCCAGCCCCTTAAGACTTTTTCTAAAAGTTTAGGG-TTTTTTTGTT  49

seq1  TTGTTTTGTTTTGTTTTGGGGTTTTCTTTGTTTACTTCTTGTTGTTTGTA  100
      |   |||||||  |||||||| |||||||| |||||||||| || ||| |
seq2  T--GTTTGTTTGATTTTGGGG-TTTCTTTG-TTACTTCTTG-TGGTTGGA  94

seq1  TCTGTTTTTTTTTAACACAGAATA-TTTTTAAGGCTTATTTACTCATGTA  149
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  TCTGTTTTTTTTTAACACAGAATATTTTTTAAGGCTTA-TTACTCATGTA  143

seq1  TTTTGTAGATATGGCTTCTTTGTCTGTATATACAT-CCACACACTATACC  198
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  TTTTGTAGATATGGATTCTTTGTCTGTATATACATCCCACACACTATACC  193

seq1  ATGATTTCACATCCCATTACAG-TTGGTTGTGAGTTGCCAGGTGAGTGCT  247
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGATTTCACATCCCATTACAGTTTGGTTGTGAGTTGCCAGGTGAGTGCT  243

seq1  GGGAATTGAACTCAGGGCCTCTGG-AAGAACAGCCAGTGC-TTTTAACTG  295
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  GGGAATTGAACTCAGGGCCTCTGGAAAGAACAGCCAGTGCTTTTTAACTG  293

seq1  CTGAGCCCCTCCCCAGCCCTTCTATGTATGTGTGTGTGAACATGCACCAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCCCTCCCCAGCCCTTCTATGTATGTGTGTGTGAACATGCACCAC  343

seq1  ATGCATGCAGTACTCAGGGAGGCCAGAAGAGATCCTGCACACCCCCTCCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCAGTACTCAGGGAGGCCAGAAGAGATCCTGCACACCCCCTCCA  393

seq1  GAACTGAAGTGACAACCA-TTTGTGAACTGCACAGTGTGAATACTGAGAA  444
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAACTGAAGTGACAACCATTTTGTGAACTGCACAGTGTGAATACTGAGAA  443

seq1  CTGAACCCCACTCCTTTGCAAGAGCATCAAATGCTCTTCACCTCTGCACC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCCCACTCCTTTGCAAGAGCATCAAATGCTCTTCACCTCTGCACC  493

seq1  ATCTCTCCAGCCACTCTTTCTGTTTATAGTAAATCCAACTGTGTTTCATA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCAGCCACTCTTTCTGTTTATAGTAAATCCAACTGTGTTTCATA  543

seq1  CTGGTTCTCCCTGAGATCCTTTCTTCAGCAAAGCTGTGAACCTGGTTTTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCTCCCTGAGATCCTTTCTTCAGCAAAGCTGTGAACCTGGTTTTG  593

seq1  CCTGGGAGGAAATCTCTGGGGGAAAAAAAAAAGTCCCAGCTGGGCATGGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGGAAATCTCTGGGGGAAAAAAAAAAGTCCCAGCTGGGCATGGT  643

seq1  GGCATGTGCCTTTAATCCCAGGACTTGGAGGCAGAGGCAGGTGGACTCTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTGCCTTTAATCCCAGGACTTGGAGGCAGAGGCAGGTGGACTCTG  693

seq1  GTCTATACAATGTGTTCCAGGTTATCCAAAACTACATGGTAAGACCCTGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATACAATGTGTTCCAGGTTATCCAAAACTACATGGTAAGACCCTGT  743

seq1  TGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  793

seq1  TGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGA  843

seq1  GCTTACCATATAATGTATTTGAGGCTATTTATCTTTTTACTTATATACAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACCATATAATGTATTTGAGGCTATTTATCTTTTTACTTATATACAT  893

seq1  TTGAATTC  902
      ||||||||
seq2  TTGAATTC  901