BAC Information

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BAC

Clone NameB6Ng01-242A07
Chromosome11 (Build37)
Map Location 115,957,764 - 116,081,439
singlet/doubletdoublet
Overlap geneTrim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3
Upstream geneCd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2
Downstream geneEvpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242A07.bB6Ng01-242A07.g
ACCGA051782GA051783
length955519
definitionB6Ng01-242A07.b B6Ng01-242A07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,957,764 - 115,958,717)(116,080,915 - 116,081,439)
sequence
gaattcagggcctctggaagagcagacagtgcgcttaaccactgagccat
ctctccagcccctggaactaatgttttctattttacctcttttttttttt
tttttttaaataaaagaaaagaaaagggaagttttacaagaacaagcatc
ctggctggctcagtcagagagactgagcgcactcttaacttcctgtggca
ggattactgtccgagctgttaggattcatttcatactttgttcagcagga
gaccaaaaggcctgtgatttcagcatttgggaagctgaggcaggaggacc
aagagacacacatgtttgggctacagagcatgggaaaataagtcacaagg
cttttcttcccatgggactttctcatcatggggctggagagacagctttc
tggttaagagcactttgtgctcttccagaagccctgaatttgctcccagc
ccttacaactatctgtaactacagttccaggcaatctggcaccctcttct
ggcagccgtgggtactgcacacatgtggtacacagacttgtagacactca
tgcacataaaataaaatggaaaagaagacagtgtcacaggcctgtgaccc
agctactctggaagctcaggagacaggaggattgaaggccagggctacaa
gcctgggtaacttagtgggaccctgccctaaagtacaaattataaaatag
gatgctattatagcttagttacaagtgctaacctgccgagcgtggtggcg
cacgcctttaatcccagcactctggaggcagaggcaggcggattcctgag
ttccaggccagcctggttctacaaaggtgagttccaggacagccagggct
acatagaaacccctgtctcaaacaaacatacaaacaacaaactaagagtg
ctaaccgaccaagggtgagggctcagagtcaaattctaatacaaccatta
ataat
aactctcccaacagcctaaaccaaaagaccagcagagggcaccctctctc
aggggccatgctctgcagctgtgcagtgaaggcgaagggctagggtctct
tatctaacctgacacctactgtctggtcattcagaggagttctgtgccct
gcccccaattgggcagggagcacctgcatgcctttcgaaagtgctccatt
aaatccaacaaacaatacaggaacttgccaacctgtagacgacatgaacc
caagcccctcagggtctgttcttccccagaaaggcagaaagggagggagg
cagctggcgagggtgtgaggtggtgggccccacatacgtgttctcagcgg
gaggaacgccctgctgtacattgttggggtgctagggagtgtccaggaga
gaagtagggatgggccagggcagtcttggctgagatccgctggctggggt
catactgcaggagtcgctgggggaggaaggacaagagactgttgggtgaa
atcagggtagagagggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115957764_115958717
seq2: B6Ng01-242A07.b_44_998

seq1  GAATTCAGGGCCTCTGGAAGAGCAGACAGTGCGCTTAACCACTGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGCCTCTGGAAGAGCAGACAGTGCGCTTAACCACTGAGCCAT  50

seq1  CTCTCCAGCCCCTGGAACTAATGTTTTCTATTTTACCTCTTTTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCCCCTGGAACTAATGTTTTCTATTTTACCTCTTTTTTTTTTT  100

seq1  TTTTTTTAAATAAAAGAAAAGAAAAGGGAAGTTTTACAAGAACAAGCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAATAAAAGAAAAGAAAAGGGAAGTTTTACAAGAACAAGCATC  150

seq1  CTGGCTGGCTCAGTCAGAGAGACTGAGCGCACTCTTAACTTCCTGTGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGCTCAGTCAGAGAGACTGAGCGCACTCTTAACTTCCTGTGGCA  200

seq1  GGATTACTGTCCGAGCTGTTAGGATTCATTTCATACTTTGTTCAGCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTACTGTCCGAGCTGTTAGGATTCATTTCATACTTTGTTCAGCAGGA  250

seq1  GACCAAAAGGCCTGTGATTTCAGCATTTGGGAAGCTGAGGCAGGAGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAAGGCCTGTGATTTCAGCATTTGGGAAGCTGAGGCAGGAGGACC  300

seq1  AAGAGACACACATGTTTGGGCTACAGAGCATGGGAAAATAAGTCACAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACACACATGTTTGGGCTACAGAGCATGGGAAAATAAGTCACAAGG  350

seq1  CTTTTCTTCCCATGGGACTTTCTCATCATGGGGCTGGAGAGACAGCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTCCCATGGGACTTTCTCATCATGGGGCTGGAGAGACAGCTTTC  400

seq1  TGGTTAAGAGCACTTTGTGCTCTTCCAGAAGCCCTGAATTTGCTCCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAGAGCACTTTGTGCTCTTCCAGAAGCCCTGAATTTGCTCCCAGC  450

seq1  CCTTACAACTATCTGTAACTACAGTTCCAGGCAATCTGGCACCCTCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAACTATCTGTAACTACAGTTCCAGGCAATCTGGCACCCTCTTCT  500

seq1  GGCAGCCGTGGGTACTGCACACATGTGGTACACAGACTTGTAGACACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCGTGGGTACTGCACACATGTGGTACACAGACTTGTAGACACTCA  550

seq1  TGCACATAAAATAAAATGGAAAAGAAGACAGTGTCACAGGCCTGTGACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATAAAATAAAATGGAAAAGAAGACAGTGTCACAGGCCTGTGACCC  600

seq1  AGCTACTCTGGAAGCTCAGGAGACAGGAGGATTGAAGGCCAGGGCTACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTCTGGAAGCTCAGGAGACAGGAGGATTGAAGGCCAGGGCTACAA  650

seq1  GCCTGGGTAACTTAGTGGGACCCTGCCCTAAAGTACAAATTATAAAATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGTAACTTAGTGGGACCCTGCCCTAAAGTACAAATTATAAAATAG  700

seq1  GATGCTATTATAGCTTAGTTACAAGTGCTAACCTGCCGAGCGTGGTGGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTATTATAGCTTAGTTACAAGTGCTAACCTGCCGAGCGTGGTGGCG  750

seq1  CACGCCTTTAATCCCAGCACTCTGGAGGCAGAGGCAGGCGGATTTCTGAG  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CACGCCTTTAATCCCAGCACTCTGGAGGCAGAGGCAGGCGGATTCCTGAG  800

seq1  TTCCAGGCCAGCCTGG-TCTAC-AAGGTGAGTTCCAGGACAGCCAGGGCT  848
      |||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  TTCCAGGCCAGCCTGGTTCTACAAAGGTGAGTTCCAGGACAGCCAGGGCT  850

seq1  ACATAGAAA-CCCTGTCTCAAACAAACAAACAAACAAACAAACAAAGAGT  897
      ||||||||| |||||||||||||||||| |||||| ||||||| ||||||
seq2  ACATAGAAACCCCTGTCTCAAACAAACATACAAAC-AACAAACTAAGAGT  899

seq1  GCTAACCTACCAAGTGTGA-GGCTCAGAGTTCAAATCTCTAATACAACCA  946
      ||||||| |||||| |||| ||||||||| |||||| |||||||||||||
seq2  GCTAACCGACCAAGGGTGAGGGCTCAGAG-TCAAAT-TCTAATACAACCA  947

seq1  ATAATAAT  954
       |||||||
seq2  TTAATAAT  955

seq1: chr11_116080915_116081439
seq2: B6Ng01-242A07.g_67_591 (reverse)

seq1  ACTCCCTCTCTACCCTGATTTCACCCAACAGTCTCTTGTCCTTCCTCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTCTCTACCCTGATTTCACCCAACAGTCTCTTGTCCTTCCTCCCC  50

seq1  CAGCGACTCCTGCAGTATGACCCCAGCCAGCGGATCTCAGCCAAGACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGACTCCTGCAGTATGACCCCAGCCAGCGGATCTCAGCCAAGACTGC  100

seq1  CCTGGCCCATCCCTACTTCTCTCCTGGACACTCCCTAGCACCCCAACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCCATCCCTACTTCTCTCCTGGACACTCCCTAGCACCCCAACAAT  150

seq1  GTACAGCAGGGCGTTCCTCCCGCTGAGAACACGTATGTGGGGCCCACCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCAGGGCGTTCCTCCCGCTGAGAACACGTATGTGGGGCCCACCAC  200

seq1  CTCACACCCTCGCCAGCTGCCTCCCTCCCTTTCTGCCTTTCTGGGGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACCCTCGCCAGCTGCCTCCCTCCCTTTCTGCCTTTCTGGGGAAGA  250

seq1  ACAGACCCTGAGGGGCTTGGGTTCATGTCGTCTACAGGTTGGCAAGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCCTGAGGGGCTTGGGTTCATGTCGTCTACAGGTTGGCAAGTTCC  300

seq1  TGTATTGTTTGTTGGATTTAATGGAGCACTTTCGAAAGGCATGCAGGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGTTTGTTGGATTTAATGGAGCACTTTCGAAAGGCATGCAGGTGC  350

seq1  TCCCTGCCCAATTGGGGGCAGGGCACAGAACTCCTCTGAATGACCAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCCCAATTGGGGGCAGGGCACAGAACTCCTCTGAATGACCAGACA  400

seq1  GTAGGTGTCAGGTTAGATAAGAGACCCTAGCCCTTCGCCTTCACTGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGTCAGGTTAGATAAGAGACCCTAGCCCTTCGCCTTCACTGCACA  450

seq1  GCTGCAGAGCATGGCCCCTGAGAGAGGGTGCCCTCTGCTGGTCTTTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGAGCATGGCCCCTGAGAGAGGGTGCCCTCTGCTGGTCTTTTGGT  500

seq1  TTAGGCTGTTGGGAGAGTTGAATTC  525
      |||||||||||||||||||||||||
seq2  TTAGGCTGTTGGGAGAGTTGAATTC  525