BAC Information

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BAC

Clone NameB6Ng01-242A18
Chromosome11 (Build37)
Map Location 3,949,139 - 4,066,457
singlet/doubletdoublet
Overlap geneSec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4
Downstream geneTbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242A18.bB6Ng01-242A18.g
ACCGA051802GA051803
length9781,058
definitionB6Ng01-242A18.b B6Ng01-242A18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,949,139 - 3,949,851)(4,065,391 - 4,066,457)
sequence
gaattctccttaaaaagggacggggtttcgttttctctctctcttgcttt
tctctctctcttgcttctcgctcgctcttgcttcttacactctggctcct
gaagatgtaagcaataaagccttgccgcagaagattctggtctgtggtgt
tcttcctggccggtcgtgagaacgcgtctaataacaattggtgccgaaac
ccgggagatataaaaacaagggagatataaaaacgagggcgatatataaa
caagggagatataaaaacaagagagatataaaaacaagggagatataaac
aagggagatataaacaagggagatatagagaaagaagaaacaggactgaa
taaacgtgtgcagaaggatcctgtagcagcgtcgttcttcctggcctgtt
gagcgcgcgcaacaagtggtgctgaaacccgggaaaagaaacatcttcag
gcaagagagaagaccccctgctacagggaggattcagaactgcatcacgg
ggaaggagtggttaataaagtgttcctgtgaaacagactgttgagaagga
tctggcgtggattcagaactcttcagctggggaacggtactgatgaagag
aaagaagaaagatgaagactgagtaaactgctgttagaaggactggtggt
cgcgtcgttcttgctggtcgagagtggacgcgacaattggtggcccgtac
ggggaaccgactcccccaccgagttcagaactttcagcagtcagtggttg
ccggcagggtaagttcaaggtgagtgaaacttgggaccccaggagtttgg
gaaggacctcggataaaatagaggtgagcataaagttgccagggaagtag
gcataaagtaacccaggagtttgggaaggacctcggataaaatagaggca
agcataaagttgccaggaagcaggcacaaggtaacaaaaggttcccggct
ttgggacagttaaggttccggtttgggg
gaattcacttgggaggcaaaggcagcaggatttctgagttcaaggccagc
ctggtctacagagtgagttccaggacggccagggctacacagagaaaccc
tgtctcgaaaagccaaaaaaaaaaaaaaaaagaattctacaacctctgtg
accactcagacccaaatctccttctatttcaccatctgtgccaccaccca
ctcaccaagcagtccatgcctaaggataggagagctgccctggagcactg
aggaagctgtttgttttttgagcatcaaggaatcagtcggtgccaccaga
cagtgtgggcctggctgcttccaccacagccgttccttagctcccctgcc
acttctgatacccacaatcagctgagcaactgcttagttcttgtaataaa
acacttattctttggctaagaatgcagcataactgtagagtacgtatcta
aggtcgaaaaggccctggattgggtaccaagctccataaaaacaaaaagg
ataaaaaccttgaacagctagtaagtattaatgtcttgcccaagtactgc
ctaaagtaacttcatttatgactgggaggttcacgaaggaaaaactgctc
tgcaagatttctatcttctgtatatatcctggataaggctacagtgtggt
ggctgagtgcgtaaaggtccttgctgacatgatggacactctgagttctg
gttccagttggtaaaagggtgggcgaactgactctcatcaagttatactc
tgtctgatccatgtgtatgtgtgtgtccatgtcatgcacacatacgggtg
tatacccacactaaagaaatgccgtactccaggataatgaaaatgtttgg
agatcctgatatttagggtctcagtggatataactcaagaaccatagttt
ttttctcttatttgttgagatacagtctcccaagtccaggctaagactgg
ccctgccaggacttgcctacctttacttctaggtgcagttagtgtgccac
caactagctcgagtatcacacttgctaaaggcacataagtctaaaagacc
aaagatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_3949139_3949851
seq2: B6Ng01-242A18.b_46_758

seq1  GAATTCTCCTTAAAAAGGGACGGGGTTTCGTTTTCTCTCTCTCTTGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTAAAAAGGGACGGGGTTTCGTTTTCTCTCTCTCTTGCTTT  50

seq1  TCTCTCTCTCTTGCTTCTCGCTCGCTCTTGCTTCTTACACTCTGGCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTTGCTTCTCGCTCGCTCTTGCTTCTTACACTCTGGCTCCT  100

seq1  GAAGATGTAAGCAATAAAGCCTTGCCGCAGAAGATTCTGGTCTGTGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTAAGCAATAAAGCCTTGCCGCAGAAGATTCTGGTCTGTGGTGT  150

seq1  TCTTCCTGGCCGGTCGTGAGAACGCGTCTAATAACAATTGGTGCCGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGGCCGGTCGTGAGAACGCGTCTAATAACAATTGGTGCCGAAAC  200

seq1  CCGGGAGATATAAAAACAAGGGAGATATAAAAACGAGGGCGATATATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAGATATAAAAACAAGGGAGATATAAAAACGAGGGCGATATATAAA  250

seq1  CAAGGGAGATATAAAAACAAGAGAGATATAAAAACAAGGGAGATATAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAGATATAAAAACAAGAGAGATATAAAAACAAGGGAGATATAAAC  300

seq1  AAGGGAGATATAAACAAGGGAGATATAGAGAAAGAAGAAACAGGACTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGATATAAACAAGGGAGATATAGAGAAAGAAGAAACAGGACTGAA  350

seq1  TAAACGTGTGCAGAAGGATCCTGTAGCAGCGTCGTTCTTCCTGGCCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGTGTGCAGAAGGATCCTGTAGCAGCGTCGTTCTTCCTGGCCTGTT  400

seq1  GAGCGCGCGCAACAAGTGGTGCTGAAACCCGGGAAAAGAAACATCTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCGCGCAACAAGTGGTGCTGAAACCCGGGAAAAGAAACATCTTCAG  450

seq1  GCAAGAGAGAAGACCCCCTGCTACAGGGAGGATTCAGAACTGCATCACGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGAGAAGACCCCCTGCTACAGGGAGGATTCAGAACTGCATCACGG  500

seq1  GGAAGGAGTGGTTAATAAAGTGTTCCTGTGAAACAGACTGTTGAGAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGTGGTTAATAAAGTGTTCCTGTGAAACAGACTGTTGAGAAGGA  550

seq1  TCTGGCGTGGATTCAGAACTCTTCAGCTGGGGAACGGTACTGATGAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCGTGGATTCAGAACTCTTCAGCTGGGGAACGGTACTGATGAAGAG  600

seq1  AAAGAAGAAAGATGAAGACTGAGTAAACTGCTGTTAGAAGGACTGGTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAAGATGAAGACTGAGTAAACTGCTGTTAGAAGGACTGGTGGT  650

seq1  CGCGTCGTTCTTGCTGGTCGAGAGTGGACGCGACAATTGGTGGCCCGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTCGTTCTTGCTGGTCGAGAGTGGACGCGACAATTGGTGGCCCGTAC  700

seq1  GGGGAACCGACTC  713
      |||||||||||||
seq2  GGGGAACCGACTC  713

seq1: chr11_4065391_4066457
seq2: B6Ng01-242A18.g_65_1122 (reverse)

seq1  GTATCTTGTGTCTTTTTAAGACTTATGTGCCTTTTAGCAAGTGTGATACT  50
      |||||||  |||||||  ||||||||||||| ||||||||||||||||||
seq2  GTATCTTTGGTCTTTT--AGACTTATGTGCC-TTTAGCAAGTGTGATACT  47

seq1  CGGAGCTAGGTTTGGTGGCACACTTAACTGCACCTAGAAGTAAAGGTAGG  100
      | |||||||  |||||||||||| ||||||||||||||||||||||||||
seq2  C-GAGCTAG--TTGGTGGCACAC-TAACTGCACCTAGAAGTAAAGGTAGG  93

seq1  CAAGTCCTGGCAGGGCCAGTCCTTAGCCTGGACTTGGGAGACTGTATCTC  150
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAAGTCCTGGCAGGGCCAGT-CTTAGCCTGGACTTGGGAGACTGTATCTC  142

seq1  AACAAATAAGAGAAAAAAACTATGGTTCTTGAGTTATATCCACTGAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAAGAGAAAAAAACTATGGTTCTTGAGTTATATCCACTGAGACC  192

seq1  CTAAATATCAGGATTCTCCAAACATTTTCATTATCCTGGAGTACGGCATT  250
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTAAATATCAGGA-TCTCCAAACATTTTCATTATCCTGGAGTACGGCATT  241

seq1  TCTTTAGTGTGGGTATACACCCGTATGTGTGCATGACATGGACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGTGTGGGTATACACCCGTATGTGTGCATGACATGGACACACACA  291

seq1  TACACATGGATCAGACAGAGTATAACTTGATGAGAGTCAGTTCGCCCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGGATCAGACAGAGTATAACTTGATGAGAGTCAGTTCGCCCACC  341

seq1  CTTTTACCAACTGGAACCAGAACTCAGAGTGTCCATCATGTCAGCAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACCAACTGGAACCAGAACTCAGAGTGTCCATCATGTCAGCAAGGA  391

seq1  CCTTTACGCACTCAGCCACCACACTGTAGCCTTATCCAGGATATATACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACGCACTCAGCCACCACACTGTAGCCTTATCCAGGATATATACAG  441

seq1  AAGATAGAAATCTTGCAGAGCAGTTTTTCCTTCGTGAACCTCCCAGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGAAATCTTGCAGAGCAGTTTTTCCTTCGTGAACCTCCCAGTCAT  491

seq1  AAATGAAGTTACTTTAGGCAGTACTTGGGCAAGACATTAATACTTACTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGTTACTTTAGGCAGTACTTGGGCAAGACATTAATACTTACTAG  541

seq1  CTGTTCAAGGTTTTTATCCTTTTTGTTTTTATGGAGCTTGGTACCCAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAAGGTTTTTATCCTTTTTGTTTTTATGGAGCTTGGTACCCAATC  591

seq1  CAGGGCCTTTTCGACCTTAGATACGTACTCTACAGTTATGCTGCATTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCTTTTCGACCTTAGATACGTACTCTACAGTTATGCTGCATTCTT  641

seq1  AGCCAAAGAATAAGTGTTTTATTACAAGAACTAAGCAGTTGCTCAGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGAATAAGTGTTTTATTACAAGAACTAAGCAGTTGCTCAGCTGA  691

seq1  TTGTGGGTATCAGAAGTGGCAGGGGAGCTAAGGAACGGCTGTGGTGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGTATCAGAAGTGGCAGGGGAGCTAAGGAACGGCTGTGGTGGAAG  741

seq1  CAGCCAGGCCCACACTGTCTGGTGGCACCGACTGATTCCTTGATGCTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGCCCACACTGTCTGGTGGCACCGACTGATTCCTTGATGCTCAA  791

seq1  AAAACAAACAGCTTCCTCAGTGCTCCAGGGCAGCTCTCCTATCCTTAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAGCTTCCTCAGTGCTCCAGGGCAGCTCTCCTATCCTTAGGC  841

seq1  ATGGACTGCTTGGTGAGTGGGTGGTGGCACAGATGGTGAAATAGAAGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTGCTTGGTGAGTGGGTGGTGGCACAGATGGTGAAATAGAAGGAG  891

seq1  ATTTGGGTCTGAGTGGTCACAGAGGTTGTAGAATTCTTTTTTTTTTTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGTCTGAGTGGTCACAGAGGTTGTAGAATTCTTTTTTTTTTTTTT  941

seq1  TTTGGCTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCCGTCCTGGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCCGTCCTGGAA  991

seq1  CTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCTGCTGCCTCT  1050
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCTGCTGCCTTT  1041

seq1  GCCTCCCAAGTGAATTC  1067
      |||||||||||||||||
seq2  GCCTCCCAAGTGAATTC  1058