BAC Information

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BAC

Clone NameB6Ng01-242E17
Chromosome11 (Build37)
Map Location 9,569,178 - 9,675,273
singlet/doubletdoublet
Overlap geneAbca13, LOC665435
Upstream geneLOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469
Downstream geneLOC382483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242E17.bB6Ng01-242E17.g
ACCGA051978GA051979
length994983
definitionB6Ng01-242E17.b B6Ng01-242E17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,674,691 - 9,675,273)(9,569,178 - 9,569,741)
sequence
gaattctaaatatattaaaaatatttagagcagaagaaaaccacaaatta
aagcataaatgcttataagcttgactttaggcaaggggctaatgttcaga
atttatcaacaacagtagaaattaagtgccaataaaataaatctgtcaat
caacaaaaaggttaataatttgaataggcaattttcatcaaaagaaacat
aaatggccagtaactaattttaaaagggctcaatatcccttgtctttgga
aaatgcaaattaaagctacctggagatgctacctcagggtctctcaggaa
gactaacatcaggaaatctgacgacaactgttgaagaggataaaaagaag
tagaaaacttatatactactgttggagctgaaaattagtacagccattac
gaaaatcaatttagaggtccttggtcatattaatccacaaagaactgttt
actctcctaataatatatacacttccatgttgattacagtcctttcacaa
tgacaagaaaatggaatcaacctagatgttcatcaacagataagttaata
ataaaaatctggtacatgtaaaattagatattatttagcattcagtacta
aagaaaaagagattcacaaaaatgatgaaccaaaaaggaagctcacgtaa
tttaaacaatatctgttattccacattcaaatccttgttcataatgtata
tacaaaatgtaaacaaatatacatatagacataatataaaatgtaggagg
aactcaataagaataacgttaggtggtaaggaagggcttcagacaagtga
aggatgtgtgagctgagaaagaggatatggtgcttttctggctttaactc
tttgtttactttattttttgtaatgggtaactgtataaaaatgtaattga
tagtgcaggtttagaatcctaagtagtgtaccatgtcttcacaacatcaa
tttgaactgtgtagaagttcactgagaggcatagggtttaggac

gaattctgggttaaggagtcagatgaaggcagcagatactgggaaaccca
cagtgagactttgcttttgcttgctgttctagagatcacaccaaagacct
gtatgtactaggcaaatgctttagtgctgcgctatatacccttagcccaa
gttcgactttttaaatttttctcttttacaaaatatttttaaataaaaat
atccttacaggtttttgtttggttttgttttagaattccatacaaagtgt
ttcggtcataatcaccttcccacccccacctcttcccaggtccactccat
gtttcccacttacccaactttctgtctttttcctgttttgatttttaacc
aattaagggtcaatttgtgctgctcagtattcttggatgcatggtctttc
actgaagcatggttggcttacccagggctaattctcgtttgttgcataag
ctttgtgcatgatgttgcaaccactgtggattcctatgtgcagctgtctc
actgtgtccaaaagacactgttttcttgtagccatactctgcatctagtt
cttacactctttataagcttcttatacttccatggtcactgagtcctgtg
gagagtgggtataggatatatgttctattttgagctgagcattctgcagt
ttcttattctctgcatcattcctagtgtgggtctccgtattagtcaccat
cttctgcaaataggagcatctatgatgagtacttagaaatgtattgattt
atagtgtcttaatcagggtttctattcctgcacaaaacatcatgaccaag
atgcaagttagggaggaaagggtttattcagcttatacttccaaactgct
gttcatcaccaaaggagttcaagactggaactcaagaatgtcaagaagca
ggagctgatgcagaggccatggtgggatgcttcttgctggtttgggttcc
tctgtcttgctcagcttgctttcttatagaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_9674691_9675273
seq2: B6Ng01-242E17.b_44_626 (reverse)

seq1  TAATATCTAATTTTACATGTACCAGATTTTTATTATTAACTTATCTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCTAATTTTACATGTACCAGATTTTTATTATTAACTTATCTGTTG  50

seq1  ATGAACATCTAGGTTGATTCCATTTTCTTGTCATTGTGAAAGGACTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATCTAGGTTGATTCCATTTTCTTGTCATTGTGAAAGGACTGTAA  100

seq1  TCAACATGGAAGTGTATATATTATTAGGAGAGTAAACAGTTCTTTGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATGGAAGTGTATATATTATTAGGAGAGTAAACAGTTCTTTGTGGA  150

seq1  TTAATATGACCAAGGACCTCTAAATTGATTTTCGTAATGGCTGTACTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATGACCAAGGACCTCTAAATTGATTTTCGTAATGGCTGTACTAAT  200

seq1  TTTCAGCTCCAACAGTAGTATATAAGTTTTCTACTTCTTTTTATCCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTCCAACAGTAGTATATAAGTTTTCTACTTCTTTTTATCCTCTT  250

seq1  CAACAGTTGTCGTCAGATTTCCTGATGTTAGTCTTCCTGAGAGACCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTTGTCGTCAGATTTCCTGATGTTAGTCTTCCTGAGAGACCCTGA  300

seq1  GGTAGCATCTCCAGGTAGCTTTAATTTGCATTTTCCAAAGACAAGGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCATCTCCAGGTAGCTTTAATTTGCATTTTCCAAAGACAAGGGATA  350

seq1  TTGAGCCCTTTTAAAATTAGTTACTGGCCATTTATGTTTCTTTTGATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCCTTTTAAAATTAGTTACTGGCCATTTATGTTTCTTTTGATGAA  400

seq1  AATTGCCTATTCAAATTATTAACCTTTTTGTTGATTGACAGATTTATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCTATTCAAATTATTAACCTTTTTGTTGATTGACAGATTTATTTT  450

seq1  ATTGGCACTTAATTTCTACTGTTGTTGATAAATTCTGAACATTAGCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCACTTAATTTCTACTGTTGTTGATAAATTCTGAACATTAGCCCCT  500

seq1  TGCCTAAAGTCAAGCTTATAAGCATTTATGCTTTAATTTGTGGTTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAAAGTCAAGCTTATAAGCATTTATGCTTTAATTTGTGGTTTTCTT  550

seq1  CTGCTCTAAATATTTTTAATATATTTAGAATTC  583
      |||||||||||||||||||||||||||||||||
seq2  CTGCTCTAAATATTTTTAATATATTTAGAATTC  583


seq1: chr11_9569178_9569741
seq2: B6Ng01-242E17.g_67_630

seq1  GAATTCTGGGTTAAGGAGTCAGATGAAGGCAGCAGATACTGGGAAACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGTTAAGGAGTCAGATGAAGGCAGCAGATACTGGGAAACCCA  50

seq1  CAGTGAGACTTTGCTTTTGCTTGCTGTTCTAGAGATCACACCAAAGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGACTTTGCTTTTGCTTGCTGTTCTAGAGATCACACCAAAGACCT  100

seq1  GTATGTACTAGGCAAATGCTTTAGTGCTGCGCTATATACCCTTAGCCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTACTAGGCAAATGCTTTAGTGCTGCGCTATATACCCTTAGCCCAA  150

seq1  GTTCGACTTTTTAAATTTTTCTCTTTTACAAAATATTTTTAAATAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGACTTTTTAAATTTTTCTCTTTTACAAAATATTTTTAAATAAAAAT  200

seq1  ATCCTTACAGGTTTTTGTTTGGTTTTGTTTTAGAATTCCATACAAAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTACAGGTTTTTGTTTGGTTTTGTTTTAGAATTCCATACAAAGTGT  250

seq1  TTCGGTCATAATCACCTTCCCACCCCCACCTCTTCCCAGGTCCACTCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTCATAATCACCTTCCCACCCCCACCTCTTCCCAGGTCCACTCCAT  300

seq1  GTTTCCCACTTACCCAACTTTCTGTCTTTTTCCTGTTTTGATTTTTAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCACTTACCCAACTTTCTGTCTTTTTCCTGTTTTGATTTTTAACC  350

seq1  AATTAAGGGTCAATTTGTGCTGCTCAGTATTCTTGGATGCATGGTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGGGTCAATTTGTGCTGCTCAGTATTCTTGGATGCATGGTCTTTC  400

seq1  ACTGAAGCATGGTTGGCTTACCCAGGGCTAATTCTCGTTTGTTGCATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGCATGGTTGGCTTACCCAGGGCTAATTCTCGTTTGTTGCATAAG  450

seq1  CTTTGTGCATGATGTTGCAACCACTGTGGATTCCTATGTGCAGCTGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGCATGATGTTGCAACCACTGTGGATTCCTATGTGCAGCTGTCTC  500

seq1  ACTGTGTCCAAAAGACACTGTTTTCTTGTAGCCATACTCTGCATCTAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCCAAAAGACACTGTTTTCTTGTAGCCATACTCTGCATCTAGTT  550

seq1  CTTACACTCTTTAT  564
      ||||||||||||||
seq2  CTTACACTCTTTAT  564


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