BAC Information

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BAC

Clone NameB6Ng01-242F16
Chromosome11 (Build37)
Map Location 102,311,001 - 102,420,933
singlet/doubletdoublet
Overlap geneItga2b, Mdk-ps1
Upstream geneIfi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575
Downstream geneLOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242F16.bB6Ng01-242F16.g
ACCGA052022GA052023
length815942
definitionB6Ng01-242F16.b B6Ng01-242F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,311,001 - 102,311,815)(102,419,992 - 102,420,933)
sequence
gaattcagtgttcaaggcgtgtctgctcagccaccacccctgcctcccta
acaaacaagtaccccagggccctccccacccggctccagcctcagcaact
ccctctttgccagaacttgcccccttgttactggcagaaatttttttttt
ctgaacactttgctccatgcagggaacggctctttcattgcctcagatca
accgtcagagccctgtccttgactacctggcttccctttgaagacttcgg
gaagtggcgcctccaccagcacccactgatatctcctcaccactcccctc
cttccatgcctccttccgcctcacctcacctctcctcttcttcttctcct
tctttttttcctaagatttatttatttattttatgtattatgagtacaat
tatagctgtcttcagaagagggtgtcagctctctgacagatttttgtgtc
attacagatggttgtgagccaccatgtggctgctgggaattgaacttggg
acctctggaagagcagtcagtgctcttaaccattgagccatctctccagc
ctccctcctctcctctcttctctcctgtcctcccctaccccctttcctcc
cctcccctttcctctccacatcccccttctcctctccacatcaccctcct
ctgtctttctccccaccctcagtactgaagattgaactcagggtcttgga
catagtaaacgactgctcccctactgaaagttgtctcagctttctttttc
cttactttctaaaaatgtgatagaaataggaccgttattaaggaggaatg
ggagtagggtggtat
gaattcaaggatattcttgtctacatagtgactttgacatcaatctaggg
tacaggagaccctatttcagaacaaaatattagcaccaggagaggtaacc
aaagtgaatggaataaaatattttaatttccaagagttctgtctttcttt
ctctctcttttttaaaagattcatttattttatgttctgtcatgactgct
tacttgtgtgtgtctctatgtactaagatatagcagtttcctctgaaaac
cttcagccctgcagggaagctccgtcagctcaggttgtaaacaacccaaa
ggcttccggaagttcctgaaatggatgggattcacctctcctgctacaag
catagagaagcagtaagaactgctgagcaacatgctaagactggaccaga
tacctagaagagtctcagacaaggtaaccacataaaagaggctgggtggg
actgctgttatgcagtgtgctccaggtacccagcttttgtgacctgtcag
ccttgctgacaggctttcagctttgcagctgtgtatagttactcttcccc
catactccagtaagtaactgcaataaaactcatgtgttcaccaagttgga
cttgggaagtttctgtactttggtctgttcttggctccttatctgggata
agtagatgcttattcatctctcctgaggaaaagtgtcacacagtatgtac
aacatgcctgcagacatgatgccctctagactgcctatagaggccaggaa
agggcatcatatttcctggaatgagaagtacaggttatgagccgggcgtg
gtggtacacgcctttaatcccaacacttgggaggcagaggcgggcagatt
tctgagttcgaggccagcctggtctacaaagtgagttccaggacagccag
ggctatatagagaaactctgtctcgggggggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_102311001_102311815
seq2: B6Ng01-242F16.b_50_864

seq1  GAATTCAGTGTTCAAGGCGTGTCTGCTCAGCCACCACCCCTGCCTCCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTTCAAGGCGTGTCTGCTCAGCCACCACCCCTGCCTCCCTA  50

seq1  ACAAACAAGTACCCCAGGGCCCTCCCCACCCGGCTCCAGCCTCAGCAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAGTACCCCAGGGCCCTCCCCACCCGGCTCCAGCCTCAGCAACT  100

seq1  CCCTCTTTGCCAGAACTTGCCCCCTTGTTACTGGCAGAAATTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTGCCAGAACTTGCCCCCTTGTTACTGGCAGAAATTTTTTTTTT  150

seq1  CTGAACACTTTGCTCCATGCAGGGAACGGCTCTTTCATTGCCTCAGATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACACTTTGCTCCATGCAGGGAACGGCTCTTTCATTGCCTCAGATCA  200

seq1  ACCGTCAGAGCCCTGTCCTTGACTACCTGGCTTCCCTTTGAAGACTTCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCAGAGCCCTGTCCTTGACTACCTGGCTTCCCTTTGAAGACTTCGG  250

seq1  GAAGTGGCGCCTCCACCAGCACCCACTGATATCTCCTCACCACTCCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGCGCCTCCACCAGCACCCACTGATATCTCCTCACCACTCCCCTC  300

seq1  CTTCCATGCCTCCTTCCGCCTCACCTCACCTCTCCTCTTCTTCTTCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATGCCTCCTTCCGCCTCACCTCACCTCTCCTCTTCTTCTTCTCCT  350

seq1  TCTTTTTTTCCTAAGATTTATTTATTTATTTTATGTATTATGAGTACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTCCTAAGATTTATTTATTTATTTTATGTATTATGAGTACAAT  400

seq1  TATAGCTGTCTTCAGAAGAGGGTGTCAGCTCTCTGACAGATTTTTGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTGTCTTCAGAAGAGGGTGTCAGCTCTCTGACAGATTTTTGTGTC  450

seq1  ATTACAGATGGTTGTGAGCCACCATGTGGCTGCTGGGAATTGAACTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGATGGTTGTGAGCCACCATGTGGCTGCTGGGAATTGAACTTGGG  500

seq1  ACCTCTGGAAGAGCAGTCAGTGCTCTTAACCATTGAGCCATCTCTCCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGGAAGAGCAGTCAGTGCTCTTAACCATTGAGCCATCTCTCCAGC  550

seq1  CTCCCTCCTCTCCTCTCTTCTCTCCTGTCCTCCCCTACCCCCTTTCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCTCTCCTCTCTTCTCTCCTGTCCTCCCCTACCCCCTTTCCTCC  600

seq1  CCTCCCCTTTCCTCTCCACATCCCCCTTCTCCTCTCCACATCACCCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTTTCCTCTCCACATCCCCCTTCTCCTCTCCACATCACCCTCCT  650

seq1  CTGTCTTTCTCCCCACCCTCAGTACTGAAGATTGAACTCAGGGTCTTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTCTCCCCACCCTCAGTACTGAAGATTGAACTCAGGGTCTTGGA  700

seq1  CATAGTAAACGACTGCTCCCCTACTGAAAGTTGTCTCAGCTTTCTTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTAAACGACTGCTCCCCTACTGAAAGTTGTCTCAGCTTTCTTTTTC  750

seq1  CTTACTTTCTAAAAATGTGATAGAAATAGGACCGTTATTAAGGAGGAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTTCTAAAAATGTGATAGAAATAGGACCGTTATTAAGGAGGAATG  800

seq1  GGAGTAGGGTGGTAT  815
      |||||||||||||||
seq2  GGAGTAGGGTGGTAT  815

seq1: chr11_102419992_102420933
seq2: B6Ng01-242F16.g_67_1008 (reverse)

seq1  CCCCCCCCCCCCCCCCCCGAGACAGAGTTTCTCTATATAGCCCTGGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCCCCCCGAGACAGAGTTTCTCTATATAGCCCTGGCTGT  50

seq1  CCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCC  100

seq1  CGCCTCTGCCTCCCAAGTGTTGGGATTAAAGGCGTGTACCACCACGCCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCTGCCTCCCAAGTGTTGGGATTAAAGGCGTGTACCACCACGCCCG  150

seq1  GCTCATAACCTGTACTTCTCATTCCAGGAAATATGATGCCCTTTCCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAACCTGTACTTCTCATTCCAGGAAATATGATGCCCTTTCCTGGC  200

seq1  CTCTATAGGCAGTCTAGAGGGCATCATGTCTGCAGGCATGTTGTACATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAGGCAGTCTAGAGGGCATCATGTCTGCAGGCATGTTGTACATAC  250

seq1  TGTGTGACACTTTTCCTCAGGAGAGATGAATAAGCATCTACTTATCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACACTTTTCCTCAGGAGAGATGAATAAGCATCTACTTATCCCAG  300

seq1  ATAAGGAGCCAAGAACAGACCAAAGTACAGAAACTTCCCAAGTCCAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAGCCAAGAACAGACCAAAGTACAGAAACTTCCCAAGTCCAACTT  350

seq1  GGTGAACACATGAGTTTTATTGCAGTTACTTACTGGAGTATGGGGGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAACACATGAGTTTTATTGCAGTTACTTACTGGAGTATGGGGGAAGA  400

seq1  GTAACTATACACAGCTGCAAAGCTGAAAGCCTGTCAGCAAGGCTGACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTATACACAGCTGCAAAGCTGAAAGCCTGTCAGCAAGGCTGACAGG  450

seq1  TCACAAAAGCTGGGTACCTGGAGCACACTGCATAACAGCAGTCCCACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAAGCTGGGTACCTGGAGCACACTGCATAACAGCAGTCCCACCCA  500

seq1  GCCTCTTTTATGTGGTTACCTTGTCTGAGACTCTTCTAGGTATCTGGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTTTATGTGGTTACCTTGTCTGAGACTCTTCTAGGTATCTGGTCC  550

seq1  AGTCTTAGCATGTTGCTCAGCAGTTCTTACTGCTTCTCTATGCTTGTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTAGCATGTTGCTCAGCAGTTCTTACTGCTTCTCTATGCTTGTAGC  600

seq1  AGGAGAGGTGAATCCCATCCATTTCAGGAACTTCCGGAAGCCTTTGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGTGAATCCCATCCATTTCAGGAACTTCCGGAAGCCTTTGGGTT  650

seq1  GTTTACAACCTGAGCTGACGGAGCTTCCCTGCAGGGCTGAAGGTTTTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAACCTGAGCTGACGGAGCTTCCCTGCAGGGCTGAAGGTTTTCAG  700

seq1  AGGAAACTGCTATATCTTAGTACATAGAGACACACACAAGTAAGCAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACTGCTATATCTTAGTACATAGAGACACACACAAGTAAGCAGTCA  750

seq1  TGACAGAACATAAAATAAATGAATCTTTTAAAAAAGAGAGAGAAAGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAACATAAAATAAATGAATCTTTTAAAAAAGAGAGAGAAAGAAAG  800

seq1  ACAGAACTCTTGGAAATTAAAATATTTTATTCCATTCACTTTGGTTACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTCTTGGAAATTAAAATATTTTATTCCATTCACTTTGGTTACCT  850

seq1  CTCCTGGTGCTAATATTTTGTTCTGAAATAGGGTCTCCTGTACCCTAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGTGCTAATATTTTGTTCTGAAATAGGGTCTCCTGTACCCTAGAT  900

seq1  TGATGTCAAAGTCACTATGTAGACAAGAATATCCTTGAATTC  942
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCAAAGTCACTATGTAGACAAGAATATCCTTGAATTC  942