BAC Information

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BAC

Clone NameB6Ng01-242J24
Chromosome11 (Build37)
Map Location 88,480,720 - 88,696,095
singlet/doubletdoublet
Overlap geneLOC100038945, Akap1
Upstream geneRnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2
Downstream geneScpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242J24.bB6Ng01-242J24.g
ACCGA052219GA052220
length4901,027
definitionB6Ng01-242J24.b B6Ng01-242J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,480,720 - 88,481,215)(88,695,070 - 88,696,095)
sequence
ttatggaaaaaaaaattatctttacagatcccatgcaagggtgtcatgga
taaccaggggtcctggaccacaaagcaactcctctggaagattcatgtat
aggacaactctgggctgcaggagcccctaggacctgggtgagctgcttta
acttcttcctctctaaactcagctaaagacccggaaccctacagaaccca
gtgtggatgcccatcattggatgattgcatctgctgctggcaccaatcac
agagctgcccaggcctacagggtaccacacagttggcggaagtgcaggga
cccatgtgcccaggccatgccacagacaaccgcaactgcatccttcaatg
aagctccaggtaaaagcaactgggcgtgagagggatggcaatgtgtgtgc
aaggcttctccctggtgcctttcaggttgggatttagcatcttcgggcag
ctacccacaggtccctttaacaagcctcgggggggggggg
gaattcagggactgtcaaccatgtcaaacccacccctttcttgcctttcc
aggtctgactttgtgaccctgccattccaaggagcagaagtccttctgga
cagtgtggttcctctgtcaggtaacaggcgaacccccaactgccgaggga
agagggtgaggaacactggcgcacggggctctcgcctatagtctgtgttg
tgtagacataattgctgtcactgttagcttctggttgaatagtctagact
gaggcctggggtctcagattcctagcaagtccccaggcaaagccagtgct
gctgtggccttgttcagggtctgctgctgtctgctccttacccagctgcc
agcctgagcggctccattgaggtccttcagagtgtggcccggagaggaca
ggcacgctggtctgagagatcgcctggcggtgtggggactgtgccagccc
gtgtgtctgagaccgagagcattgctagagagggtgctggcctcccttag
ctgtgtcctctggcacgacgggatggcgcctgcacatcagggaggctgtg
agagacacacgtactgatgtaggaagtggtcagatcgcagctctcaagcc
gtagggaagtctgtgtaaccccctgccctctcccaggccggccccttcgg
atcctgctgtgtccagagcagttttaagtgctcaagacttaccacagtgt
aaccaggcttggtgttgcacacttgaaatcctagcatttgggaggacaga
gcagggggcttgccatgagtttgaggccagcatgggcaacagaagctgaa
gtccagctgagtgtctgccagagctccagcaggctctgtctttccctctt
ctcttcctaacctttctctctgttctgtccatctaacaatctgaccagaa
cccaggagaacaggcctggcttggtacagactcgccaccatactttctaa
gcttccgccttccacccactactttctgccttgggacatttcttttctta
gatataacttttataagtcagccacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88480720_88481215
seq2: B6Ng01-242J24.b_50_545

seq1  GAATTCTTATGGAAAAAAAAATTATCTTTACAGATCCCATGCAAGGGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGGAAAAAAAAATTATCTTTACAGATCCCATGCAAGGGTGT  50

seq1  CATGGATAACCAGGGGTCCTGGACCACAAAGCAACTCCTCTGGAAGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATAACCAGGGGTCCTGGACCACAAAGCAACTCCTCTGGAAGATTC  100

seq1  ATGTATAGGACAACTCTGGGCTGCAGGAGCCCCTAGGACCTGGGTGAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAGGACAACTCTGGGCTGCAGGAGCCCCTAGGACCTGGGTGAGCT  150

seq1  GCTTTAACTTCTTCCTCTCTAAACTCAGCTAAAGACCCGGAACCCTACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAACTTCTTCCTCTCTAAACTCAGCTAAAGACCCGGAACCCTACAG  200

seq1  AACCCAGTGTGGATGCCCATCATTGGATGATTGCATCTGCTGCTGGCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGTGTGGATGCCCATCATTGGATGATTGCATCTGCTGCTGGCACC  250

seq1  AATCACAGAGCTGCCCAGGCCTACAGGGTACCACACAGTTGGCGGAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGAGCTGCCCAGGCCTACAGGGTACCACACAGTTGGCGGAAGTG  300

seq1  CAGGGACCCATGTGCCCAGGCCATGCCACAGACAACCGCAACTGCATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACCCATGTGCCCAGGCCATGCCACAGACAACCGCAACTGCATCCT  350

seq1  TCAATGAAGCTCCAGGTAAAAGCAACTGGGCGTGAGAGGGATGGCAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAAGCTCCAGGTAAAAGCAACTGGGCGTGAGAGGGATGGCAATGT  400

seq1  GTGTGCAAGGCTTCTCCCTGGTGCCTTTCAGGTTGGGATTTAGCATCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAAGGCTTCTCCCTGGTGCCTTTCAGGTTGGGATTTAGCATCTTC  450

seq1  GGGCAGCTACCCACAGGTCCCTTTAACAAGCCTCGGGGGGGGGGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCTACCCACAGGTCCCTTTAACAAGCCTCGGGGGGGGGGGG  496

seq1: chr11_88695070_88696095
seq2: B6Ng01-242J24.g_67_1093 (reverse)

seq1  AGGTGGCTGACTTATAAAAGTAATATCTAAGAAAAG-AATGTGCCAAGGC  49
      ||||||||||||||||||||| |||||||||||||| ||||| |||||||
seq2  AGGTGGCTGACTTATAAAAGTTATATCTAAGAAAAGAAATGTCCCAAGGC  50

seq1  AGGAAGTAGTGGGGTGGAAGGC-GAAGCTTAGAAAGTATGGTGGCGAGTC  98
      || ||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  AGAAAGTAGT-GGGTGGAAGGCGGAAGCTTAGAAAGTATGGTGGCGAGTC  99

seq1  TGTGACAAGGCAGGGCCTGTTCTCCTGGG-TCTGGTCAGATTGTTAGATG  147
      |||  |||| || |||||||||||||||| ||||||||||||||||||||
seq2  TGTACCAAGCCA-GGCCTGTTCTCCTGGGTTCTGGTCAGATTGTTAGATG  148

seq1  GACAGAACAGAGAGAAAGGTTAGGAAGAGAAGAGGGAAAGACAGAGCCTG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAACAGAGAGAAAGGTTAGGAAGAGAAGAGGGAAAGACAGAGCCTG  198

seq1  CTGGAGCTCTGGCAGACACTCAGCTGGACTTCAGCTTCTGTTGCCCATGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCTCTGGCAGACACTCAGCTGGACTTCAGCTTCTGTTGCCCATGC  248

seq1  TGGCCTCAAACTCATGGCAAGCCCCCTGCTCTGTCCTCCCAAATGCTAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCAAACTCATGGCAAGCCCCCTGCTCTGTCCTCCCAAATGCTAGG  298

seq1  ATTTCAAGTGTGCAACACCAAGCCTGGTTACACTGTGGTAAGTCTTGAGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGTGTGCAACACCAAGCCTGGTTACACTGTGGTAAGTCTTGAGC  348

seq1  ACTTAAAACTGCTCTGGACACAGCAGGATCCGAAGGGGCCGGCCTGGGAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAACTGCTCTGGACACAGCAGGATCCGAAGGGGCCGGCCTGGGAG  398

seq1  AGGGCAGGGGGTTACACAGACTTCCCTACGGCTTGAGAGCTGCGATCTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGGGGTTACACAGACTTCCCTACGGCTTGAGAGCTGCGATCTGA  448

seq1  CCACTTCCTACATCAGTACGTGTGTCTCTCACAGCCTCCCTGATGTGCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCCTACATCAGTACGTGTGTCTCTCACAGCCTCCCTGATGTGCAG  498

seq1  GCGCCATCCCGTCGTGCCAGAGGACACAGCTAAGGGAGGCCAGCACCCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCATCCCGTCGTGCCAGAGGACACAGCTAAGGGAGGCCAGCACCCTC  548

seq1  TCTAGCAATGCTCTCGGTCTCAGACACACGGGCTGGCACAGTCCCCACAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAATGCTCTCGGTCTCAGACACACGGGCTGGCACAGTCCCCACAC  598

seq1  CGCCAGGCGATCTCTCAGACCAGCGTGCCTGTCCTCTCCGGGCCACACTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGGCGATCTCTCAGACCAGCGTGCCTGTCCTCTCCGGGCCACACTC  648

seq1  TGAAGGACCTCAATGGAGCCGCTCAGGCTGGCAGCTGGGTAAGGAGCAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGACCTCAATGGAGCCGCTCAGGCTGGCAGCTGGGTAAGGAGCAGA  698

seq1  CAGCAGCAGACCCTGAACAAGGCCACAGCAGCACTGGCTTTGCCTGGGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCAGACCCTGAACAAGGCCACAGCAGCACTGGCTTTGCCTGGGGA  748

seq1  CTTGCTAGGAATCTGAGACCCCAGGCCTCAGTCTAGACTATTCAACCAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTAGGAATCTGAGACCCCAGGCCTCAGTCTAGACTATTCAACCAGA  798

seq1  AGCTAACAGTGACAGCAATTATGTCTACACAACACAGACTATAGGCGAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAACAGTGACAGCAATTATGTCTACACAACACAGACTATAGGCGAGA  848

seq1  GCCCCGTGCGCCAGTGTTCCTCACCCTCTTCCCTCGGCAGTTGGGGGTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGTGCGCCAGTGTTCCTCACCCTCTTCCCTCGGCAGTTGGGGGTTC  898

seq1  GCCTGTTACCTGACAGAGGAACCACACTGTCCAGAAGGACTTCTGCTCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTACCTGACAGAGGAACCACACTGTCCAGAAGGACTTCTGCTCCT  948

seq1  TGGAATGGCAGGGTCACAAAGTCAGACCTGGAAAGGCAAGAAAGGGGTGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGGCAGGGTCACAAAGTCAGACCTGGAAAGGCAAGAAAGGGGTGG  998

seq1  GTTTGACATGGTTGACAGTCCCTGAATTC  1026
      |||||||||||||||||||||||||||||
seq2  GTTTGACATGGTTGACAGTCCCTGAATTC  1027