MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-242K15
Chromosome	11 (Build37)
Map Location	20,915,975 - 21,056,940
singlet/doublet	doublet
Overlap gene	Peli1
Upstream gene	Spred2, Actr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035
Downstream gene	Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1, Ehbp1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Spred2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:114716 MGI:2150019
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Actr2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66713 MGI:1913963
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rab1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19324 MGI:97842
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cep68 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216543 MGI:2667663
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC216544 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:216544
definition	note : 60S ribosomal protein L12 pseudogene pseudo : _no_value

name	Slc1a4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:55963 MGI:2135601
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042746 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042746
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 132 mRNAs, 4325 ESTs, 24 Proteins

name	LOC382492 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:382492
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 697 ESTs, 9 Proteins

name	Sertad2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58172 MGI:1931026
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC665953 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665953
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 1 Protein pseudo : _no_value

name	Aftph (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216549 MGI:1923012
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1110067D22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216551 MGI:1916114
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042035 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042035
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 3 Proteins

name	Peli1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67245 MGI:1914495
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vps54 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245944 MGI:2178798
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ugp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216558 MGI:2183447
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042081 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042081
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	4932414J04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237694 MGI:3605619
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mdh1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17449 MGI:97051
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AV249152 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216560 MGI:2144467
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pgam1-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:83437 MGI:1933119
definition	note : phosphoglycerate mutase 1, pseudogene 1 pseudo : _no_value

name	LOC382494 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:382494
definition	note : ribosomal protein L15 pseudogene pseudo : _no_value

name	LOC666047 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666047
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins pseudo : _no_value

name	Otx1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18423 MGI:97450
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ehbp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216565 MGI:2667252
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Spred2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142349024 GeneID:114716 MGI:2150019
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sprouty-related, EVH1 domain containing 2 transcript_id : NM_033523.3

name	Actr2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122824 GeneID:66713 MGI:1913963
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ARP2 actin-related protein 2 homolog (yeast) transcript_id : NM_146243.1

name	Rab1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133891747 GeneID:19324 MGI:97842
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAB1, member RAS oncogene family transcript_id : NM_008996.3

name	Cep68 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142378303 GeneID:216543 MGI:2667663
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : centrosomal protein 68 transcript_id : NM_172260.3

name	Slc1a4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31980934 GeneID:55963 MGI:2135601
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 transcript_id : NM_018861.2

name	LOC100042746 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261674 GeneID:100042746
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 132 mRNAs, 4324 ESTs, 24 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), transcript variant 1 transcript_id : XM_001479322.1

name	LOC100042746 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261676 GeneID:100042746
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 100 mRNAs, 2222 ESTs, 1 Protein product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), transcript variant 2 transcript_id : XM_001479331.1

name	LOC382492 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261625 GeneID:382492
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 697 ESTs, 9 Proteins product : similar to ribosomal protein S17 transcript_id : XM_980426.2

name	Sertad2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84490404 GeneID:58172 MGI:1931026
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SERTA domain containing 2 transcript_id : NM_021372.2

name	Sertad2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84490402 GeneID:58172 MGI:1931026
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SERTA domain containing 2 transcript_id : NM_001038625.1

name	Aftph (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31340973 GeneID:216549 MGI:1923012
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aftiphilin transcript_id : NM_181411.2

name	1110067D22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385345 GeneID:216551 MGI:1916114
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1110067D22 gene transcript_id : NM_173752.2

name	LOC100042035 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261630 GeneID:100042035
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 3 Proteins product : similar to ribosomal protein L12 transcript_id : XM_001477441.1

name	Peli1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114158716 GeneID:67245 MGI:1914495
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pellino 1 transcript_id : NM_023324.2

name	Vps54 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142375345 GeneID:245944 MGI:2178798
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vacuolar protein sorting 54 (yeast) transcript_id : NM_139061.3

name	Ugp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365513 GeneID:216558 MGI:2183447
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-glucose pyrophosphorylase 2 transcript_id : NM_139297.3

name	4932414J04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261594 GeneID:237694 MGI:3605619
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4932414J04 gene transcript_id : XM_001471843.1

name	Mdh1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982177 GeneID:17449 MGI:97051
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : malate dehydrogenase 1, NAD (soluble) transcript_id : NM_008618.2

name	AV249152 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385577 GeneID:216560 MGI:2144467
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AV249152 transcript_id : NM_145425.3

name	Otx1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76563937 GeneID:18423 MGI:97450
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : orthodenticle homolog 1 (Drosophila) transcript_id : NM_011023.3

name	Ehbp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23346488 GeneID:216565 MGI:2667252
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EH domain binding protein 1 transcript_id : NM_153078.1

name	Spred2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:15743556 CCDS:CCDS24454.1 GeneID:114716 MGI:2150019
definition	GO_component : GO:0031410 - cytoplasmic vesicle [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0005173 - stem cell factor receptor binding [Evidence IPI] GO_process : GO:0007275 - development [Evidence IEA]; GO:0000188 - inactivation of MAPK activity [Evidence IMP]; GO:0009966 - regulation of signal transduction [Evidence IEA] codon_start : 1 note : sprouty protein with EVH-1 domain 2, related sequence product : sprouty-related protein with EVH-1 domain 2 protein_id : NP_277058.1

name	Actr2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122825 CCDS:CCDS24455.1 GeneID:66713 MGI:1913963
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 product : actin-related protein 2 protein_id : NP_666355.1

name	Rab1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679587 GeneID:19324 MGI:97842
definition	GO_component : GO:0000178 - exosome (RNase complex) [Evidence IEA]; GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence ISS] [Evidence IEA]; GO:0006886 - intracellular protein transport [Evidence TAS]; GO:0007046 - ribosome biogenesis [Evidence IEA]; GO:0006364 - rRNA processing [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : ras-related YPT1 protein product : RAB1, member RAS oncogene family protein_id : NP_033022.1

name	Cep68 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625968 CCDS:CCDS24456.1 GeneID:216543 MGI:2667663
definition	codon_start : 1 product : centrosomal protein 68 protein_id : NP_758464.2

name	Slc1a4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980935 CCDS:CCDS24457.1 GeneID:55963 MGI:2135601
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015175 - neutral amino acid transporter activity [Evidence IDA]; GO:0017153 - sodium:dicarboxylate symporter activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006835 - dicarboxylic acid transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : neutral amino acid transporter product : solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 protein_id : NP_061349.2

name	LOC100042746 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261677 GeneID:100042746
definition	codon_start : 1 product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) isoform 2 protein_id : XP_001479381.1

name	LOC100042746 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261675 GeneID:100042746
definition	codon_start : 1 product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) isoform 1 protein_id : XP_001479372.1

name	LOC382492 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261626 GeneID:382492
definition	codon_start : 1 product : similar to ribosomal protein S17 protein_id : XP_985520.2

name	Sertad2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84490403 CCDS:CCDS24458.1 GeneID:58172 MGI:1931026
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0003713 - transcription coactivator activity [Evidence IDA]; GO:0016563 - transcriptional activator activity [Evidence IDA] GO_process : GO:0051301 - cell division [Evidence IEA]; GO:0030308 - negative regulation of cell growth [Evidence ISS]; GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : PHD zinc finger- and bromodomain-interacting protein 2 product : transcriptional regulator interacting with the PHD-bromodomain 2 protein_id : NP_001033714.1

name	Sertad2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84490405 CCDS:CCDS24458.1 GeneID:58172 MGI:1931026
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0003713 - transcription coactivator activity [Evidence IDA]; GO:0016563 - transcriptional activator activity [Evidence IDA] GO_process : GO:0051301 - cell division [Evidence IEA]; GO:0030308 - negative regulation of cell growth [Evidence ISS]; GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : PHD zinc finger- and bromodomain-interacting protein 2 product : transcriptional regulator interacting with the PHD-bromodomain 2 protein_id : NP_067347.2

name	Aftph (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31088896 CCDS:CCDS24459.1 GeneID:216549 MGI:1923012
definition	GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : aftiphilin protein protein_id : NP_852076.1

name	1110067D22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29611654 CCDS:CCDS24461.1 GeneID:216551 MGI:1916114
definition	codon_start : 1 product : hypothetical protein LOC216551 protein_id : NP_776113.1

name	LOC100042035 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261631 GeneID:100042035
definition	codon_start : 1 product : similar to ribosomal protein L12 protein_id : XP_001477491.1

name	Peli1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114158717 CCDS:CCDS24462.1 GeneID:67245 MGI:1914495
definition	codon_start : 1 product : pellino 1 protein_id : NP_075813.2

name	Vps54 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45237183 CCDS:CCDS24463.1 GeneID:245944 MGI:2178798
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0015031 - protein transport [Evidence IEA]; GO:0042147 - retrograde transport, endosome to Golgi [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : VPS54-like; wobbler product : vacuolar protein sorting 54 protein_id : NP_620692.2

name	Ugp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21314832 CCDS:CCDS24464.1 GeneID:216558 MGI:2183447
definition	GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0003983 - UTP:glucose-1-phosphate uridylyltransferase activity [Evidence IEA] codon_start : 1 note : uridindiphosphoglucosepyrophosphorylase 2 product : UDP-glucose pyrophosphorylase 2 protein_id : NP_647458.1

name	4932414J04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149261595 GeneID:237694 MGI:3605619
definition	codon_start : 1 product : hypothetical protein LOC237694 protein_id : XP_001471893.1

name	Mdh1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982178 CCDS:CCDS24466.1 GeneID:17449 MGI:97051
definition	GO_component : GO:0005829 - cytosol [Evidence ISS] GO_function : GO:0004459 - L-lactate dehydrogenase activity [Evidence IEA]; GO:0030060 - L-malate dehydrogenase activity [Evidence IEA]; GO:0016615 - malate dehydrogenase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006096 - glycolysis [Evidence IEA]; GO:0006108 - malate metabolism [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]; GO:0006100 - tricarboxylic acid cycle intermediate metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation note : malate dehydrogenase, soluble product : malate dehydrogenase 1, NAD (soluble) protein_id : NP_032644.2

name	AV249152 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981772 CCDS:CCDS24467.1 GeneID:216560 MGI:2144467
definition	codon_start : 1 note : homoloc-13 product : hypothetical protein LOC216560 protein_id : NP_663400.2

name	Otx1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:25168269 CCDS:CCDS24468.1 GeneID:18423 MGI:97450
definition	GO_component : GO:0005634 - nucleus [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IDA] GO_process : GO:0009952 - anterior/posterior pattern formation [Evidence IGI]; GO:0007275 - development [Evidence IEA]; GO:0030900 - forebrain development [Evidence IGI]; GO:0030901 - midbrain development [Evidence IGI]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : orthodenticle 1 protein_id : NP_035153.1

name	Ehbp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23346489 CCDS:CCDS24469.1 GeneID:216565 MGI:2667252
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] codon_start : 1 exception : mismatches in translation note : KIAA0903-like; DNA sequence AF424697 product : EH domain binding protein 1 protein_id : NP_694718.1

name	LOC100042081 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042081
definition	number : 1 pseudo : _no_value

name	LOC666047 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666047
definition	number : 1 pseudo : _no_value

name	LOC666047 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666047
definition	number : 2 pseudo : _no_value

name	LOC666047 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666047
definition	number : 3 pseudo : _no_value

name	LOC665953 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261627 GeneID:665953
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 1 Protein product : similar to ribosomal protein L15 pseudo : _no_value transcript_id : XR_033194.1

clone name	MSMg01-479B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341E22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-187F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-208D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475M16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-353I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131K12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-066H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098H10
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-177O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319M02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037B06
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-242K15.b	B6Ng01-242K15.g
ACC	GA052249	GA052250
length	1,179	928
definition	B6Ng01-242K15.b	B6Ng01-242K15.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(21,055,767 - 21,056,940)	(20,915,975 - 20,916,902)
sequence	gaattccttgtggctgtggaatcccacccagatattttcaatgtcctttt gtatttaaagaggtattaaaatacttcataaatatatatggccatatctg aagtcaggagcaatcacaaaaccataaaagcatcttcagacacactcttg attgtgaaatctagagaaaccctgaagccctcagctctttgatgtcatac tacaaaaggctacatcttagagtactatccgacttccattagacaagtcc cctgtcaccattttatcacatcactcctgcaaacagacactaaatttgca cagcacacttgacttagtgaccagtttagttctttgagcagaatcaagaa aaagatataatcaacacttgcattcacaaagaataatccgaaatgacaat gaaacttgtcaaatttacacactcaaacgaatacattctttttagctaga cattttaagaagcaacccttaccctaaagttgggagcaattatctggtac acgcacaaatgtgggtcctgtgtatcaacaaccaccacagagaattgctc ctcaggagccctctgagcccaatttagctttgtagttttctggctgtgga tatctgacaaactttctctcatccctgcatattcctctaattcaattccc gtatctccatttcaagatttgttcactgtgaattaagaatctaagatgaa ataatgaccattgaaccatggctactaaagatgtgggttactttcctggt aaaatccaggtaatgagtttcaagtcagagagctttgggtatgactgcat aggtccctgaatggcttatcttggtattttctaactcccttcacgatttc aagtttacttagtgaacagcaatccattagttggtacctacactgtatca gcacctggcattcagatgaccaagtcataactttttaacgagaactcaat aaagaatccaagtaaagttgagagtctccgaaattcactgcagccctgca gaagtggaaatttgcaaacctaactgctctaactccctgagtgaataaaa caaaaccctgccctagggtgcacactccatttgcctggaacaacttatga ctaccaaaagagccctaacttgaacagtgaattgcctctctccacttcca gctaggttggcttgaggaagttcacacta	gaattccatagaatgaactaaaaggtataagataaatagatgaacccctg ttgtttcctttctcctgtctattatcccattgctacatttcttctgatat atatataaaatcaagaatgactgttgaagaattttgactcctttagttca gtccttcagcctctccatacacacacacttaaaatatggtatggatgtga tgatttagatttcacaatccattcaggaggggaaaggatacagggccagt catccagtcaggatttcatgttatcaagtggcctttgcacacacagttcc ctgctcttatcagggaaaagaaccagctcaaagccctacagcaggtaaca gccgggacctgttggcctcagttcagaaccatagcctgcttgtaatggag ttcccaggacagcttggcaaacgtgcaagtctgcatgaccagataactgt gattttcagagaggagagagagagacaagagcccaccagactcttgcaaa ctgatagcagtcctcagttgtgtgacaagacatagagcatctgcctctgg gcacagagatgcactgtgggcacaggtaggcaagtgcaattccctcctac acgtgtcagtgagacttggagctatcaagggcttcttgttatttttcata agaactgctgccaaagcatctcaaagctctgctgcctccttgtctcttaa aagaataaagctccacgggggacacagagtcctattccaggagaaatcaa tagaaaatgttaatctgtcagtgataaactattgtgtgtattgatttcca tggcttttagggctcttagtaacaacaaagggaaactaattgttctggaa tgtgtgtgcccctaagagcatctctctggggagcaggagcttgctggtta gtcgagatattgttatgggggggggggg
quality values	Open. Hide. 58 33 26 26 58 58 58 58 58 58 58 62 47 48 62 62 52 54 54 49 56 41 62 62 47 33 62 62 47 47 42 47 50 24 24 38 56 56 32 32 43 49 62 62 62 62 62 62 62 62 62 62 62 59 62 59 62 49 49 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 56 59 46 42 43 48 56 62 62 62 62 62 62 62 62 62 62 54 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 38 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 58 58 58 54 54 54 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 54 58 53 58 58 38 58 58 54 54 54 58 58 54 42 58 54 38 58 58 54 58 58 58 58 54 54 54 58 45 37 58 41 41 58 58 58 58 45 50 58 58 58 50 58 54 58 54 58 51 58 58 58 58 58 54 54 58 51 58 58 54 51 54 58 58 50 58 58 51 46 58 45 45 53 51 58 58 58 58 52 53 58 58 51 58 49 49 51 54 58 53 53 53 54 50 58 58 58 58 58 42 49 50 49 50 54 58 53 54 50 50 49 50 54 49 50 49 49 58 53 58 58 58 52 50 51 49 53 50 41 35 58 58 51 49 39 46 51 46 26 58 49 58 37 54 39 39 49 52 58 47 51 51 50 52 52 42 53 45 54 40 45 53 52 54 54 38 46 31 53 53 54 49 42 52 40 38 54 38 24 42 42 47 49 49 37 37 29 33 32 40 49 54 49 53 39 39 45 37 54 37 37 35 26 51 52 54 36 35 39 46 34 25 32 36 38 28 52 36 53 51 33 52 54 54 37 37 37 37 42 40 51 34 33 52 32 53 52 32 53 51 46 37 35 51 45 34 36 37 31 46 26 40 32 32 52 52 33 32 53 53 31 31 32 34 33 17 29 53 32 33 31 31 17 51 31 30 46 22 22 31 41 44 31 42 36 31 51 30 39 34 45 30 28 31 33 28 37 31 51 51 30 43 31 28 42 30 31 26 46 38 28 42 33 28 31 31 42 33 48 42 31 33 26 41 42 47 27 31 31 31 41 31 31 38 42 33 32 28 30 36 37 27 26 31 24 39 31 31 32 37 31 30 21 32 31 18 30 29 32 31 34 37 25 31 31 39 24 30 31 34 32 33 35 28 28 28 32 36 38 18 24 31 37 30 21 15 38 28 32 26 16 20 11 25 31 31 31 32 31 14 24 33 37 48 48 41 31 22 17 33 28 42 27 30 20 26 37 32 22 26 16 18 43 33 27 26 17 18 20 22 17 21 30 23 23 48 30 29 22 17 23 11 4 5 16 32 20 24 13 16 8 21 48 11 25 20 31 22 30 22 29 29 32 17 24 37 20 7 13 14 13 16 26 38 8 11 9 21 9 40 9 21 40 13 9 12 17 30 31 7 20 19 10 11 18 16 17 12 12 18 24 17 16 16 16 8 29 24 7 9 9 6 18 12 3 4 4 8 29 31 11 7 6 40 47 18 3 18 10 8 4 3 29 28 15 13 14 18 10 8 23 6 3 3 4 6 5 4 8 8 17 30 7 13 6 9 13 8 5 24 12 5 4 6 18 25 16 10 7 8 22 5 10 5 8 5 4 20 22 5 4 7 7 6 1 3 1 3 3 5 7 9 7 9 5 7 3 5 4 3 4 5 7 8 10 6 4 5 4 7 5 4 11 8 9 8 21 5 7 3 2 4 1 5 2 2 7 2 4 6 2 2 2 11 5 12 17 5 7 18 5 11 13 7 6 5 8 6 2 3	Open. Hide. 62 47 51 59 62 62 59 23 62 59 15 34 30 19 28 23 25 28 36 39 30 49 49 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 59 56 43 54 59 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 59 59 62 62 62 62 59 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 54 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 43 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 46 43 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 54 47 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 51 54 53 58 58 58 58 58 58 52 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 54 54 58 58 58 58 58 58 58 54 49 54 58 54 58 50 58 54 58 52 49 58 58 54 58 58 58 58 58 58 58 54 58 54 58 58 58 49 47 52 49 45 42 45 47 58 58 50 51 58 58 47 51 58 58 58 49 51 53 58 58 51 53 51 58 53 58 58 58 58 54 52 50 50 58 51 50 58 58 50 58 58 50 52 53 40 58 52 53 49 49 46 53 49 58 54 39 39 39 33 49 50 49 54 58 29 54 51 50 53 45 40 33 40 58 54 51 58 53 53 52 52 53 53 41 42 39 51 58 58 51 34 32 49 44 50 32 54 44 40 49 54 45 51 54 50 44 41 54 46 31 49 49 49 49 53 40 41 54 54 40 52 53 45 52 51 52 42 44 32 39 41 33 34 41 42 51 40 35 34 42 53 37 30 54 54 53 35 53 32 37 32 52 53 32 45 34 33 53 28 33 18 49 46 47 40 30 14 34 32 32 28 33 16 32 33 38 32 31 33 41 30 35 30 15 51 38 27 46 51 36 31 36 31 37 31 31 25 45 51 48 31 31 42 26 38 33 34 31 32 36 42 31 31 31 25 31 31 34 19 28 46 30 34 38 33 43 32 43 34 44 30 39 30 24 33 28 37 16 12 47 31 25 32 27 31 31 31 18 36 48 48 36 31 22 48 37 29 31 32 19 25 25 27 34 26 26 31 14 26 25 16 38 8 5 28 9 22 41 26 31 33 27 21 18 19 31 26 23 30 30 17 25 14 21 18 19 21 30 20 21 25 18 20 39 39 32 30 17 26 24 33 9 32 28 34 24 32 32 34 31 28 30 43 48 22 33 11 32 9 23 19 6 11 30 30 22 23 21 16 13 21 13 19 22 16 24 27 12 30 6 23 15 8 10 9 9 16 12 22 14 27 38 38 40 32 32 38 38 30 34 15 8

Alignment Information

BAC End 1

BAC End 2

seq1: chr11_21055767_21056940
seq2: B6Ng01-242K15.b_45_1223 (reverse)

seq1  TAGTGTGAACTTCCCTCAA-CCAACCAAACTTGGGGAGTGGAGA---GCA  46
      |||||||||||| |||||| |||||| | ||  || ||||||||   |||
seq2  TAGTGTGAACTT-CCTCAAGCCAACCTAGCT--GGAAGTGGAGAGAGGCA  47

seq1  ATTCACTGGTTTCAGTTTGGTGCTC-TTTGTAAGTCATAAGTTGTTC--A  93
      ||||||||  ||||  || | |||| ||||  |||||||||||||||   
seq2  ATTCACTG--TTCAAGTTAGGGCTCTTTTGGTAGTCATAAGTTGTTCCAG  95

seq1  GCAAAT-GAGTGTGCACCTAGGGGCAGGGTTTTGTTTTATCCACTCAGGG  142
      |||||| |||||||||||   ||||||||||||||||||| |||||||||
seq2  GCAAATGGAGTGTGCACCCTAGGGCAGGGTTTTGTTTTATTCACTCAGGG  145

seq1  AGTTAGAGCAGTTA-GTTTGCAAA-TTCCACTTCTGCAGGGCTGCAGTGA  190
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  AGTTAGAGCAGTTAGGTTTGCAAATTTCCACTTCTGCAGGGCTGCAGTGA  195

seq1  A-TTCGGAGACTCCTCAACTTTACTTGGATTCTTTATTGAGTTCTCGTTA  239
      | |||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTTCGGAGACT-CTCAACTTTACTTGGATTCTTTATTGAGTTCTCGTTA  244

seq1  AAAAGTTATGACTTGGTCATCTGAATGCCAGGTGCTGATACAGTGTAGGT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTATGACTTGGTCATCTGAATGCCAGGTGCTGATACAGTGTAGGT  294

seq1  ACCAACTAATGGATTGCTGTTCACTAAGTAAACTTGAAATCGTGAAGGGA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTAATGGATTGCTGTTCACTAAGTAAACTTGAAATCGTGAAGGGA  344

seq1  GTTAGAAAATACCAAGATAAGCCATTCAGGGACCTATGCAGTCATACCCA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAAATACCAAGATAAGCCATTCAGGGACCTATGCAGTCATACCCA  394

seq1  AAGCTCTCTGACTTGAAACTCATTACCTGGATTTTACCAGGAAAGTAACC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTCTGACTTGAAACTCATTACCTGGATTTTACCAGGAAAGTAACC  444

seq1  CACATCTTTAGTAGCCATGGTTCAATGGTCATTATTTCATCTTAGATTCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTTAGTAGCCATGGTTCAATGGTCATTATTTCATCTTAGATTCT  494

seq1  TAATTCACAGTGAACAAATCTTGAAATGGAGATACGGGAATTGAATTAGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCACAGTGAACAAATCTTGAAATGGAGATACGGGAATTGAATTAGA  544

seq1  GGAATATGCAGGGATGAGAGAAAGTTTGTCAGATATCCACAGCCAGAAAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATGCAGGGATGAGAGAAAGTTTGTCAGATATCCACAGCCAGAAAA  594

seq1  CTACAAAGCTAAATTGGGCTCAGAGGGCTCCTGAGGAGCAATTCTCTGTG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGCTAAATTGGGCTCAGAGGGCTCCTGAGGAGCAATTCTCTGTG  644

seq1  GTGGTTGTTGATACACAGGACCCACATTTGTGCGTGTACCAGATAATTGC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGTTGATACACAGGACCCACATTTGTGCGTGTACCAGATAATTGC  694

seq1  TCCCAACTTTAGGGTAAGGGTTGCTTCTTAAAATGTCTAGCTAAAAAGAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACTTTAGGGTAAGGGTTGCTTCTTAAAATGTCTAGCTAAAAAGAA  744

seq1  TGTATTCGTTTGAGTGTGTAAATTTGACAAGTTTCATTGTCATTTCGGAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCGTTTGAGTGTGTAAATTTGACAAGTTTCATTGTCATTTCGGAT  794

seq1  TATTCTTTGTGAATGCAAGTGTTGATTATATCTTTTTCTTGATTCTGCTC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTGTGAATGCAAGTGTTGATTATATCTTTTTCTTGATTCTGCTC  844

seq1  AAAGAACTAAACTGGTCACTAAGTCAAGTGTGCTGTGCAAATTTAGTGTC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTAAACTGGTCACTAAGTCAAGTGTGCTGTGCAAATTTAGTGTC  894

seq1  TGTTTGCAGGAGTGATGTGATAAAATGGTGACAGGGGACTTGTCTAATGG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCAGGAGTGATGTGATAAAATGGTGACAGGGGACTTGTCTAATGG  944

seq1  AAGTCGGATAGTACTCTAAGATGTAGCCTTTTGTAGTATGACATCAAAGA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGGATAGTACTCTAAGATGTAGCCTTTTGTAGTATGACATCAAAGA  994

seq1  GCTGAGGGCTTCAGGGTTTCTCTAGATTTCACAATCAAGAGTGTGTCTGA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGGCTTCAGGGTTTCTCTAGATTTCACAATCAAGAGTGTGTCTGA  1044

seq1  AGATGCTTTTATGGTTTTGTGATTGCTCCTGACTTCAGATATGGCCATAT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTTTTATGGTTTTGTGATTGCTCCTGACTTCAGATATGGCCATAT  1094

seq1  ATATTTATGAAGTATTTTAATACCTCTTTAAATACAAAAGGACATTGAAA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATGAAGTATTTTAATACCTCTTTAAATACAAAAGGACATTGAAA  1144

seq1  ATATCTGGGTGGGATTCCACAGCCACAAGGAATTC  1174
      |||||||||||||||||||||||||||||||||||
seq2  ATATCTGGGTGGGATTCCACAGCCACAAGGAATTC  1179

seq1: chr11_20915975_20916902
seq2: B6Ng01-242K15.g_67_993

seq1  GAATTCCATAGAATGAACTAAAAGGTATAAGATAAATAGATGAACCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGAATGAACTAAAAGGTATAAGATAAATAGATGAACCCCTG  50

seq1  TTGTTTCCTTTCTCCTGTCTATTATCCCATTGCTACATTTCTTCTGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCTTTCTCCTGTCTATTATCCCATTGCTACATTTCTTCTGATAT  100

seq1  ATATATAAAATCAAGAATGACTGTTGAAGAATTTTGACTCCTTTAGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAAATCAAGAATGACTGTTGAAGAATTTTGACTCCTTTAGTTCA  150

seq1  GTCCTTCAGCCTCTCCATACACACACACTTAAAATATGGTATGGATGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCAGCCTCTCCATACACACACACTTAAAATATGGTATGGATGTGA  200

seq1  TGATTTAGATTTCACAATCCATTCAGGAGGGGAAAGGATACAGGGCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAGATTTCACAATCCATTCAGGAGGGGAAAGGATACAGGGCCAGT  250

seq1  CATCCAGTCAGGATTTCATGTTATCAAGTGGCCTTTGCACACACAGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGTCAGGATTTCATGTTATCAAGTGGCCTTTGCACACACAGTTCC  300

seq1  CTGCTCTTATCAGGGAAAAGAACCAGCTCAAAGCCCTACAGCAGGTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTATCAGGGAAAAGAACCAGCTCAAAGCCCTACAGCAGGTAACA  350

seq1  GCCGGGACCTGTTGGCCTCAGTTCAGAACCATAGCCTGCTTGTAATGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGACCTGTTGGCCTCAGTTCAGAACCATAGCCTGCTTGTAATGGAG  400

seq1  TTCCCAGGACAGCTTGGCAAACGTGCAAGTCTGCATGACCAGATAACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGACAGCTTGGCAAACGTGCAAGTCTGCATGACCAGATAACTGT  450

seq1  GATTTTCAGAGAGGAGAGAGAGAGACAAGAGCCCACCAGACTCTTGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCAGAGAGGAGAGAGAGAGACAAGAGCCCACCAGACTCTTGCAAA  500

seq1  CTGATAGCAGTCCTCAGTTGTGTGACAAGACATAGAGCATCTGCCTCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGCAGTCCTCAGTTGTGTGACAAGACATAGAGCATCTGCCTCTGG  550

seq1  GCACAGAGATGCACTGTGGGCACAGGTAGGCAAGTGCAATTCCCTCCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAGATGCACTGTGGGCACAGGTAGGCAAGTGCAATTCCCTCCTAC  600

seq1  ACGTGTCAGTGAGACTTGGAGCTATCAAGGGCTTCTTGTTATTTTTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTCAGTGAGACTTGGAGCTATCAAGGGCTTCTTGTTATTTTTCATA  650

seq1  AGAACTGCTGCCAAAGCATCTCAAAGCTCTGCTGCCTCCTTGTCTCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGCTGCCAAAGCATCTCAAAGCTCTGCTGCCTCCTTGTCTCTTAA  700

seq1  AAGAATAAAGCTCCACGGGGGACACAGAGTCCTATTCCAGGAGAAATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAAGCTCCACGGGGGACACAGAGTCCTATTCCAGGAGAAATCAA  750

seq1  TAGAAAATGTTAATCTGTCAGTGATAAACTATTGTGTGTATTGATTTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATGTTAATCTGTCAGTGATAAACTATTGTGTGTATTGATTTCCA  800

seq1  TGGCTTTTAGGGCTCTTAGTAACAACAAAGGGAAACTAATTGTTCTGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTAGGGCTCTTAGTAACAACAAAGGGAAACTAATTGTTCTGGAA  850

seq1  TGTGTGTGCCCCTAAGAGCATCTCTCTGGGGAGCAGGGAGCTTGCTGGTT  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTGTGTGCCCCTAAGAGCATCTCTCTGGGGAGCA-GGAGCTTGCTGGTT  899

seq1  AGTCGAGAATATGTTATGGGGGGGGGGG  928
      ||||||||   |||||||||||||||||
seq2  AGTCGAGATATTGTTATGGGGGGGGGGG  927

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information