BAC Information

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BAC

Clone NameB6Ng01-244C22
Chromosome19 (Build37)11 (Build37)
Map Location 12,511,661 - 12,512,824101,770,386 - 101,770,604
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl
Downstream geneMpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244C22.bB6Ng01-244C22.g
ACCGA053380GA053381
length1,187656
definitionB6Ng01-244C22.b B6Ng01-244C22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,511,661 - 12,512,824)(101,770,386 - 101,770,604)
sequence
gaattcctaaaattttatctgtgattattaagctcttttattaatgggac
tgctaccaggtcctttcctgataatcaaagctgcaatgagaactctgcca
gtctcccaagtgtcaccagttaattgctcttagatggtaaccagactttc
tcctacttaaagaacgtttcaagaggttgtaaaacaattgatcgaaggtc
ataaaaagggaactaaggatttattataggtgttaggacaaaagataaaa
tatcgactgggtttaaatatccaaaacttcactaataagttagttatggc
ttttaaaccttctgtgaacctgtggaactcaaacaggtgatggatgttta
gccagatacttactcctaacggatgtgcctgtaaacatccgctgttgtaa
acttctatttcaatttatgatttgattttttgtgtgaacttgtgatgaac
tttgtagcatgtgatcatgtattcggaaagatgtacaagtactgaggaca
aagatgtgagagagaacgggatcaatagaggagattttttgcttttcccc
acttagagtagaatcttttccctttcttcacttttccctttaccttctta
ggatctttctgctttccccttagatagctttcataggaaactctttacaa
cttagtaataagcgttataatcacttctctaagtgtcttctcttccctca
acttccactagcaggctaaaagttagagcccagcagttcctgctgagata
gaacaaaggctgcattgcttagtcctccactgttaggttacaggtgttaa
tcacctaagccagcagtcttttaccctcagaaaaagcaagaacgttttca
ggactttttagaagttatcaagaagaccctgagacccttagactttaaag
tcatcaccagagtccgactctgtgactctaccgctacctgggcctgggcc
aggaagctcctggcagagacatgctttttgttctgagtagtatttgattt
ctcattcattggatgaaagggcatcctggtttgtcaaattttggctgctg
gtgggaagtgttgtacaaaacatggggatgcaaggattcttgggtataat
gggtttcaatttcccttgggaaatgagaatacctgggggaatggctagaa
gaatctggaatgcctagagtatctgaagttttacttt
gaattctttgtagagagattgaacttcttccttgaataagacccatatat
cctggaggcagagagacacacccacagtgggtatataaattatgagaaaa
tctgaggttaatattactgaggtggtagaactaaggcccaatcctgtaaa
tattgcttttatttcctcacatgaagtgatgagatgagagccataccaaa
gctattttaagacacttttccttatttgttctaactatttgaggcctagg
cctggaagcttcaagcctctttacaatccaatcttccaatatgactaagt
caactgctttgactgaattgctctgcctggcctaaagcaaactttggcaa
taagttcaaaatcttccagctccttctctttctgtagcttgttctctctt
cacctatgcctagcttgttctctctgcaatctatctctgtaaacaactgt
cccagtaaaatttacacatacatacacacacacaccatctctctctctct
ctctctctctctccctctctctctctctctctctctttctgtctctctct
ctctctccctctctctccctttaagtagcctctctttcctttgccattct
tgtgtgaggtgggcataacctatctctgactcattctgtcaaatctttca
ctaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_12511661_12512824
seq2: B6Ng01-244C22.b_68_1234

seq1  GTGATTATTAAGCTCTTTTATTAATGGGACTGCTACCAGGTCCTTTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTATTAAGCTCTTTTATTAATGGGACTGCTACCAGGTCCTTTCCTG  50

seq1  ATAATCAAAGCTGCAATGAGAACTCTGCCAGTCTCCCAAGTGTCACCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAAAGCTGCAATGAGAACTCTGCCAGTCTCCCAAGTGTCACCAGT  100

seq1  TAATTGCTCTTAGATGGTAACCAGACTTTCTCCTACTTAAAGAACGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCTCTTAGATGGTAACCAGACTTTCTCCTACTTAAAGAACGTTTC  150

seq1  AAGAGGTTGTAAAACAATTGATCGAAGGTCATAAAAAGGGAACTAAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTTGTAAAACAATTGATCGAAGGTCATAAAAAGGGAACTAAGGAT  200

seq1  TTATTATAGGTGTTAGGACAAAAGATAAAATATCGACTGGGTTTAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATAGGTGTTAGGACAAAAGATAAAATATCGACTGGGTTTAAATAT  250

seq1  CCAAAACTTCACTAATAAGTTAGTTATGGCTTTTAAACCTTCTGTGAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTTCACTAATAAGTTAGTTATGGCTTTTAAACCTTCTGTGAACC  300

seq1  TGTGGAACTCAAACAGGTGATGGATGTTTAGCCAGATACTTACTCCTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAACTCAAACAGGTGATGGATGTTTAGCCAGATACTTACTCCTAAC  350

seq1  GGATGTGCCTGTAAACATCCGCTGTTGTAAACTTCTATTTCAATTTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGCCTGTAAACATCCGCTGTTGTAAACTTCTATTTCAATTTATGA  400

seq1  TTTGATTTTTTGTGTGAACTTGTGATGAACTTTGTAGCATGTGATCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTTTTGTGTGAACTTGTGATGAACTTTGTAGCATGTGATCATGT  450

seq1  ATTCGGAAAGATGTACAAGTACTGAGGACAAAGATGTGAGAGAGAACGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGAAAGATGTACAAGTACTGAGGACAAAGATGTGAGAGAGAACGGG  500

seq1  ATCAATAGAGGAGATTTTTTGCTTTTCCCCACTTAGAGTAGAATCTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAGAGGAGATTTTTTGCTTTTCCCCACTTAGAGTAGAATCTTTTC  550

seq1  CCTTTCTTCACTTTTCCCTTTACCTTCTTAGGATCTTTCTGCTTTCCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTCACTTTTCCCTTTACCTTCTTAGGATCTTTCTGCTTTCCCCT  600

seq1  TAGATAGCTTTCATAGGAAACTCTTTACAACTTAGTAATAAGCGTTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGCTTTCATAGGAAACTCTTTACAACTTAGTAATAAGCGTTATAA  650

seq1  TCACTTCTCTAAGTGTCTTCTCTTCCCTCAACTTCCACTAGCAGGCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTCTAAGTGTCTTCTCTTCCCTCAACTTCCACTAGCAGGCTAAA  700

seq1  AGTTAGAGCCCAGCAGTTCCTGCTGAGATAGAACAAAGGCTGCATTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAGCCCAGCAGTTCCTGCTGAGATAGAACAAAGGCTGCATTGCTT  750

seq1  AGTCCTCCACTGTTAGGTTACAGGTGTTAATCACCTAAGCCAGCAGTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCCACTGTTAGGTTACAGGTGTTAATCACCTAAGCCAGCAGTCTT  800

seq1  TTACCCTCAGAAAAAGCAAGAACGTTTTCAGGACTTTTTAGAAGTTATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTCAGAAAAAGCAAGAACGTTTTCAGGACTTTTTAGAAGTTATCA  850

seq1  AGAAGACCCTGAGACCCTTAGACTTTAAAGTCATCACCAGAGTCCGACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACCCTGAGACCCTTAGACTTTAAAGTCATCACCAGAGTCCGACTC  900

seq1  TGTGACTCTACCGCTACCTGGGCCTGGGCCAGGAAGCTCCTGGCAGAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTGACTCTACCGCTACCTGGGCCTGGGCCAGGAAGCTCCTGGCAGA-GA  949

seq1  CATGC-TTTTGTTCTGAGTAGTATTTGATTTTCTTCATTCATTGGATGAA  999
      ||||| |||||||||||||||||||||||||   ||||||||||||||||
seq2  CATGCTTTTTGTTCTGAGTAGTATTTGATTT--CTCATTCATTGGATGAA  997

seq1  A-GGCATCCTGGTTTGTTCCAAATTTTGGCTGCT-GTGGGAAGTGTTGTA  1047
      | |||||||||||||||  ||||||||||||||| |||||||||||||||
seq2  AGGGCATCCTGGTTTGT--CAAATTTTGGCTGCTGGTGGGAAGTGTTGTA  1045

seq1  ACAAACATGGGGATGCAAGGATCTTTTGGTATAAT-GGTTTC-ATTTCCT  1095
        ||||||||||||||||||||  || |||||||| |||||| |||||| 
seq2  CAAAACATGGGGATGCAAGGATTCTTGGGTATAATGGGTTTCAATTTCCC  1095

seq1  TTGGGAAATGAAGATACCTGGG---AT-GCTAGAAGATACCTGAGATG-C  1140
      |||||||||||  |||||||||   || ||||||||| | |||  ||| |
seq2  TTGGGAAATGAGAATACCTGGGGGAATGGCTAGAAGA-ATCTGGAATGCC  1144

seq1  TAGAAGATACTGAAGTTTTACTTT  1164
      ||||  || |||||||||||||||
seq2  TAGAGTAT-CTGAAGTTTTACTTT  1167

seq1: chr11_101770386_101770604
seq2: B6Ng01-244C22.g_117_632

seq1  --------------------------------------------------  0
                                                        
seq2  CTGGAGGCAGAGAGACACACCCACAGTGGGTATATAAATTATGAGAAAAT  50

seq1  --------------------------------------------------  0
                                                        
seq2  CTGAGGTTAATATTACTGAGGTGGTAGAACTAAGGCCCAATCCTGTAAAT  100

seq1  --------------------------------------------------  0
                                                        
seq2  ATTGCTTTTATTTCCTCACATGAAGTGATGAGATGAGAGCCATACCAAAG  150

seq1  --------------------------------------------------  0
                                                        
seq2  CTATTTTAAGACACTTTTCCTTATTTGTTCTAACTATTTGAGGCCTAGGC  200

seq1  CTGGAGGCAGAGAGACCCCCTCTCTCC--TCC------CC----TGAGGA  38
      ||||| ||    ||    ||||| | |  |||      ||    |||  |
seq2  CTGGAAGCTTCAAG----CCTCTTTACAATCCAATCTTCCAATATGACTA  246

seq1  A---AGCTGTCTTGACTG-GTGGGTCT-CCAGGCC-ATGGC---CTTT--  77
      |   | |||  |||||||  | | ||| || |||| |  ||   ||||  
seq2  AGTCAACTGCTTTGACTGAATTGCTCTGCCTGGCCTAAAGCAAACTTTGG  296

seq1  -AAT-------ACATCTTACTGTTTTTCCTCTTT------GTTCCTCTGT  113
       |||       | ||||| | | |  | ||||||       ||  ||| |
seq2  CAATAAGTTCAAAATCTTCCAGCTCCTTCTCTTTCTGTAGCTTGTTCTCT  346

seq1  CTT----TCTGTCT------TTGTCTCTG-----TCTCTCTG-------C  141
      |||    | || ||      || ||||||     | ||||||       |
seq2  CTTCACCTATGCCTAGCTTGTTCTCTCTGCAATCTATCTCTGTAAACAAC  396

seq1  TG--------------------------------------TCTCTGTCTG  153
      ||                                      ||||| ||| 
seq2  TGTCCCAGTAAAATTTACACATACATACACACACACACCATCTCTCTCTC  446

seq1  TCTGTCTGTCTGTCTACCCGTCTCTCTCTCTCTCTC----TCTGTCTCTC  199
      ||| ||| ||| ||| ||  ||||||||||||||||    ||||||||||
seq2  TCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTTTCTGTCTCTC  496

seq1  TCTGTCTCTCTCTCTCTCTC  219
      ||| |||||| |||||||||
seq2  TCTCTCTCTCCCTCTCTCTC  516