BAC Information

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BAC

Clone NameB6Ng01-245F08
Chromosome11 (Build37)18 (Build37)
Map Location 113,282,860 - 113,282,90059,721,941 - 59,722,490
singlet/doubletsingletsinglet
Overlap geneSlc39a11
Upstream geneEG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9, 2610035D17Rik
Downstream geneSstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739, LOC634710, 4932435O22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245F08.bB6Ng01-245F08.g
ACCGA054243GA054244
length539550
definitionB6Ng01-245F08.b B6Ng01-245F08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(113,282,860 - 113,282,900)(59,721,941 - 59,722,490)
sequence
actgatataaatctaactgatatataacaagcctctagagttttgatttc
tctggattacagggatttgtaacagctaaccatggggggtaggatggctg
ggaatgtgggcaggttctgcagcaagcatgagtagctacctcatggggga
ccatggggattgggagaccagttactagagtttaactggcgatagtatgg
gttattttttaatattacacacaccagttccttgtgtctctaatctttct
ggtatgtttatcatgaaagaatatcagaatttgtcaaagtccttaaatcc
atctaatgagatgatcatgtgctttttgtatttgtgtctgtttatatggt
agattgcatttatcaatttacatatgttgaaccatctctgcatctcttga
ccaagccctcttgatcaaggtggatcaccttatatctgatatataagtgc
tttattgtgccattttttatctatggtcatatgagaaattcatcagaaat
cctctctctctctctctctctctctctctctctctctct
gaattccttctcatttctttagctaatgctcaaccactacttctatcagc
ctttaaaaggaagcttgcaagctagaagacactgaaaattattcctatag
aaagcatagaactggaaaaaaatagaacaaaagtaccatacagttcatag
gatttaattctgaaattctatgatttgggcttgtgatattttttatttta
acaatctcttaggtatcattttaataagataaatctaaattctttagtgt
tataacaagttgagaagctaaataatttacatttatttaagaagtttaca
aataaaatttgcttgtgaataatcttaaagagtatataatactctgatac
cccattataggtaaaaagagcactttttcttttaaaattaatattgtctt
cagagaatatattatatactgtcaagtatttcaaaataagtataaaataa
aaaatgttggagttatttggcctaaaataaagaccatctgctgaaaaaat
accttctattgaaatataccaaaggttgcattagagaataaagaagtttg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_113282860_113282900
seq2: B6Ng01-245F08.b_554_594 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAT  41
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAT  41

seq1: chr18_59721941_59722490
seq2: B6Ng01-245F08.g_65_614 (reverse)

seq1  CAAACTTCTTTATTCTCTAATGCAACCTTTGGTATATTTCAATAGAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCTTTATTCTCTAATGCAACCTTTGGTATATTTCAATAGAAGGT  50

seq1  ATTTTTTCAGCAGATGGTCTTTATTTTAGGCCAAATAACTCCAACATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCAGCAGATGGTCTTTATTTTAGGCCAAATAACTCCAACATTTT  100

seq1  TTATTTTATACTTATTTTGAAATACTTGACAGTATATAATATATTCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATACTTATTTTGAAATACTTGACAGTATATAATATATTCTCTG  150

seq1  AAGACAATATTAATTTTAAAAGAAAAAGTGCTCTTTTTACCTATAATGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATATTAATTTTAAAAGAAAAAGTGCTCTTTTTACCTATAATGGG  200

seq1  GTATCAGAGTATTATATACTCTTTAAGATTATTCACAAGCAAATTTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGAGTATTATATACTCTTTAAGATTATTCACAAGCAAATTTTATT  250

seq1  TGTAAACTTCTTAAATAAATGTAAATTATTTAGCTTCTCAACTTGTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACTTCTTAAATAAATGTAAATTATTTAGCTTCTCAACTTGTTATA  300

seq1  ACACTAAAGAATTTAGATTTATCTTATTAAAATGATACCTAAGAGATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAAGAATTTAGATTTATCTTATTAAAATGATACCTAAGAGATTGT  350

seq1  TAAAATAAAAAATATCACAAGCCCAAATCATAGAATTTCAGAATTAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAAAATATCACAAGCCCAAATCATAGAATTTCAGAATTAAATC  400

seq1  CTATGAACTGTATGGTACTTTTGTTCTATTTTTTTCCAGTTCTATGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAACTGTATGGTACTTTTGTTCTATTTTTTTCCAGTTCTATGCTTT  450

seq1  CTATAGGAATAATTTTCAGTGTCTTCTAGCTTGCAAGCTTCCTTTTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGAATAATTTTCAGTGTCTTCTAGCTTGCAAGCTTCCTTTTAAAG  500

seq1  GCTGATAGAAGTAGTGGTTGAGCATTAGCTAAAGAAATGAGAAGGAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATAGAAGTAGTGGTTGAGCATTAGCTAAAGAAATGAGAAGGAATTC  550