BAC Information

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BAC

Clone NameB6Ng01-245H12
Chromosome11 (Build37)
Map Location 49,981,311 - 50,155,561
singlet/doubletdoublet
Overlap geneTbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx
Upstream geneBtnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696
Downstream gene1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245H12.bB6Ng01-245H12.g
ACCGA054345GA054346
length637867
definitionB6Ng01-245H12.b B6Ng01-245H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,154,925 - 50,155,561)(49,981,311 - 49,982,177)
sequence
gaattcagcgaactaaaaataagtctcctgctagcacacgtgccagccga
ggcaccagcccagagaacacagccctttgttgttttcagcagacaatatt
tcttttctaatttttaaaacctgggtagggcactgcactatacctgctat
ctcagcatttaggaggcagaagcaggagaatctctgtaagtttctgcttg
ttccagtctacagagttccaggctattcagggctacacacagtgagaccc
tttctcaaaaacaacaaaacataatttaaaatgatttgattttttatgtg
tatggattttttttttgcctacttgtttgtctttgcatcacatacatgtg
tgtctggtgctcatagagagggcattggctgtcctggcatttgagttgca
ggtggatggttgtgaggcaccatgtgggtgctgggaatcaaacctgggtc
ctctggaaaagcagccagtgctctaaccatggagctctctctccaacctt
gaccagtttctcattgttggcttctttaagtgttaatttgatttttatct
ttgttttaaagtttcaaaatattttttgttttgttttgtttttttgtttt
ttgagacggggcttctctgtatagcatagccctggct
gaattcactttgtagaccaggctggcctcgaactcagaaatccacctgcc
tctgcctcccgagtgctgggattaaaagcgtgcaccaccacgcccagcgt
ctttttttcttttgaaaatgagagagtaccccttcgtgtgtggtactggg
gatggagcccagggcctaaagcttgctcaccatgaactctgcccctgagc
tgagtccccagccacagtgttacagggcagagcccagccaagcaggaggg
cagcatggggccctgtaggggctggttctacagaaacacgggtccgacct
gtaaggactcatggtttgtagtcaaaagaatgttctctgcttttttctgg
tgtgtggaagcactgctacaggagcagcaggaaggaagtggaaatgagga
caccccagaaagaagaggtacaagccattccaattggtgatcccaggggc
ggtgggaccttgtgcccacccttgcttgttacattccctctccagtcact
ggaatggcacatgtgtgctctgacaggggctgatggctccgtgcatagcc
tggctaatctgctgccctcatagtgtgcaaccagggctccagactcacag
cagcctctctccagtcttggagaagacaggtttgggcttttcatcgactt
aggtccagctacttccactaacttagggagaaacgtgtgggaatttgagg
gtgtttctaatcactccctaagtgccaggtcattgtgtaatagtgcccaa
gtaacctcaggtcacagagcagcgcaccctgctaccagccacagcctgct
ttctctcattttgacagatggagattaatctctctctctctcttctctct
ctctcttctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_50154925_50155561
seq2: B6Ng01-245H12.b_44_680 (reverse)

seq1  AGCCAGGGCTATGCTATACAGAGAAGCCCCGTCTCAAAAAACAAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCTATGCTATACAGAGAAGCCCCGTCTCAAAAAACAAAAAAAC  50

seq1  AAAACAAAACAAAAAATATTTTGAAACTTTAAAACAAAGATAAAAATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAAAAATATTTTGAAACTTTAAAACAAAGATAAAAATCAA  100

seq1  ATTAACACTTAAAGAAGCCAACAATGAGAAACTGGTCAAGGTTGGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACACTTAAAGAAGCCAACAATGAGAAACTGGTCAAGGTTGGAGAGA  150

seq1  GAGCTCCATGGTTAGAGCACTGGCTGCTTTTCCAGAGGACCCAGGTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCATGGTTAGAGCACTGGCTGCTTTTCCAGAGGACCCAGGTTTGA  200

seq1  TTCCCAGCACCCACATGGTGCCTCACAACCATCCACCTGCAACTCAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGCACCCACATGGTGCCTCACAACCATCCACCTGCAACTCAAATG  250

seq1  CCAGGACAGCCAATGCCCTCTCTATGAGCACCAGACACACATGTATGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAGCCAATGCCCTCTCTATGAGCACCAGACACACATGTATGTGA  300

seq1  TGCAAAGACAAACAAGTAGGCAAAAAAAAAATCCATACACATAAAAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGACAAACAAGTAGGCAAAAAAAAAATCCATACACATAAAAAATC  350

seq1  AAATCATTTTAAATTATGTTTTGTTGTTTTTGAGAAAGGGTCTCACTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTTTAAATTATGTTTTGTTGTTTTTGAGAAAGGGTCTCACTGTG  400

seq1  TGTAGCCCTGAATAGCCTGGAACTCTGTAGACTGGAACAAGCAGAAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCTGAATAGCCTGGAACTCTGTAGACTGGAACAAGCAGAAACTT  450

seq1  ACAGAGATTCTCCTGCTTCTGCCTCCTAAATGCTGAGATAGCAGGTATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATTCTCCTGCTTCTGCCTCCTAAATGCTGAGATAGCAGGTATAG  500

seq1  TGCAGTGCCCTACCCAGGTTTTAAAAATTAGAAAAGAAATATTGTCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGCCCTACCCAGGTTTTAAAAATTAGAAAAGAAATATTGTCTGCT  550

seq1  GAAAACAACAAAGGGCTGTGTTCTCTGGGCTGGTGCCTCGGCTGGCACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAACAAAGGGCTGTGTTCTCTGGGCTGGTGCCTCGGCTGGCACGT  600

seq1  GTGCTAGCAGGAGACTTATTTTTAGTTCGCTGAATTC  637
      |||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGCAGGAGACTTATTTTTAGTTCGCTGAATTC  637

seq1: chr11_49981311_49982177
seq2: B6Ng01-245H12.g_69_935

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  50

seq1  TCTGCCTCCCGAGTGCTGGGATTAAAAGCGTGCACCACCACGCCCAGCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCGAGTGCTGGGATTAAAAGCGTGCACCACCACGCCCAGCGT  100

seq1  CTTTTTTTCTTTTGAAAATGAGAGAGTACCCCTTCGTGTGTGGTACTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTCTTTTGAAAATGAGAGAGTACCCCTTCGTGTGTGGTACTGGG  150

seq1  GATGGAGCCCAGGGCCTAAAGCTTGCTCACCATGAACTCTGCCCCTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGCCCAGGGCCTAAAGCTTGCTCACCATGAACTCTGCCCCTGAGC  200

seq1  TGAGTCCCCAGCCACAGTGTTACAGGGCAGAGCCCAGCCAAGCAGGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCCCAGCCACAGTGTTACAGGGCAGAGCCCAGCCAAGCAGGAGGG  250

seq1  CAGCATGGGGCCCTGTAGGGGCTGGTTCTACAGAAACACGGGTCCGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGGGGCCCTGTAGGGGCTGGTTCTACAGAAACACGGGTCCGACCT  300

seq1  GTAAGGACTCATGGTTTGTAGTCAAAAGAATGTTCTCTGCTTTTTTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGACTCATGGTTTGTAGTCAAAAGAATGTTCTCTGCTTTTTTCTGG  350

seq1  TGTGTGGAAGCACTGCTACAGGAGCAGCAGGAAGGAAGTGGAAATGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGAAGCACTGCTACAGGAGCAGCAGGAAGGAAGTGGAAATGAGGA  400

seq1  CACCCCAGAAAGAAGAGGTACAAGCCATTCCAATTGGTGATCCCAGGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGAAAGAAGAGGTACAAGCCATTCCAATTGGTGATCCCAGGGGC  450

seq1  GGTGGGACCTTGTGCCCACCCTTGCTTGTTACATTCCCTCTCCAGTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGACCTTGTGCCCACCCTTGCTTGTTACATTCCCTCTCCAGTCACT  500

seq1  GGAATGGCACATGTGTGCTCTGACAGGGGCTGATGGCTCCGTGCATAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGCACATGTGTGCTCTGACAGGGGCTGATGGCTCCGTGCATAGCC  550

seq1  TGGCTAATCTGCTGCCCTCATAGTGTGCAACCAGGGCTCCAGACTCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAATCTGCTGCCCTCATAGTGTGCAACCAGGGCTCCAGACTCACAG  600

seq1  CAGCCTCTCTCCAGTCTTGGAGAAGACAGGTTTGGGCTTTTCATCGACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCTCTCCAGTCTTGGAGAAGACAGGTTTGGGCTTTTCATCGACTT  650

seq1  AGGTCCAGCTACTTCCACTAACTTA-GGAGAAACGTGTGGGAATTTGAGG  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGTCCAGCTACTTCCACTAACTTAGGGAGAAACGTGTGGGAATTTGAGG  700

seq1  GTGTTTCTAATCACTCCCTAAGTGCCAGGTCATTGTGTAATAGTGCCCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTAATCACTCCCTAAGTGCCAGGTCATTGTGTAATAGTGCCCAA  750

seq1  GTAACCTCAGGTCACAGAGCAGCGCACCCTGCTACCAGCCACAGCCTGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTCAGGTCACAGAGCAGCGCACCCTGCTACCAGCCACAGCCTGCT  800

seq1  TTCTCTCA-TTTGACAGATGGAGATTAATCTCTCTCTCTCTCTCTCTCTC  848
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  TTCTCTCATTTTGACAGATGGAGATTAATCTCTCTCTCTCTCT-TCTCTC  849

seq1  TCTCTCTCTCTCTCTCTCT  867
      ||||||| |||||||||||
seq2  TCTCTCT-TCTCTCTCTCT  867