BAC Information

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BAC

Clone NameB6Ng01-245I02
Chromosome11 (Build37)
Map Location 41,574,773 - 41,744,724
singlet/doubletdoublet
Overlap geneGabrg2
Upstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292
Downstream geneGabra1, Gabra6, Gabrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245I02.bB6Ng01-245I02.g
ACCGA054369GA054370
length1,0981,156
definitionB6Ng01-245I02.b B6Ng01-245I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,743,612 - 41,744,724)(41,574,773 - 41,575,920)
sequence
gaattccttggcttcggttctggaattggatgacagcttcagaataatga
attgcactacaaagatcaacatcgggctgggcatctgtggtgggaattta
gaaaatgagaaagaagctatagcgttaatgagagaagctttggttaaaga
aatgcggagaactgatgttagcaagtctctcatggtgtgactctacagaa
aagccactgcgctctgaagagtttgtgaacactgcattcctttcatctaa
aacttttttctaaagggaaaactctaaagggtttactcagactgccttct
taaggtagaatgtgtaccatagaaggctgcatagtaaattaagacaactt
ttgtcagcaatcagaagctctggtgacacaaatcagcttaataagagaac
tgcattcaactgttgctcagcttccgactctgtcccctgtcccttctcta
cgtctctctatataaccactggttatagagagcttgttgtttttttgttt
ttttgtttttttttttttttctgcagcaagcattagggtttaggaaccaa
gagtcttggttttgccagtgctaagttgtgtcttggattaatatgtcttc
atgcatgtgcctaaacaggtttaatctcccagagtggtagagtggtagag
acacctcccaatgtcctttcaaatgtcaattttctactgcctgtctaaca
acctttctcttatggttcagaaaggtgtttaatgatgttataaatgttac
cctacttcataattcctagcattaatgaactttttcttatctgtttgaaa
gtgtgtcgagcatcacaagtgtgtatgagctgtttgcatgttctcaggaa
cccaattattactcctattttaaggagtgtgagttttagggaaataaaga
agttgcctgaagtcacatgacagtttatgaaacgactaacttttcaccct
agctactgatgaggccttgaagcaccctgtacactcatgccacagtctgc
attttttgttcttgggctcaggctcatctcctggatgctgattgatttgc
tgcatcatccagaatagattctttcctggtcaactagtgtcatatctg

gaattccttatcatggattgtctcatagctcatctcatggtgagaataag
ctggttacttttgacagttggaaatgaaaggaaggagatgcttccaagca
taaatgggaaaatgggagagaaacaggtaacaaacagtgtggttagatag
aggaggtgtgaccctcacagatgggaactctgaatttgaaggataattta
gcaaactgacagggaggcatctgagccttttgatgacagattcattcact
ttccttcccatatctcttccattagttaaaatgttgaagggactggtttg
ctcccatctcttttactgtatatccctagtctccacatggttgaatttaa
ttactaaacagatatcaggccaattggaagagagctgattgtagattgtt
aggggaacatttgcactgtagcacctttgactacaaatgaaggagcaaat
aatcagatgatttgtgtttagaatgaaaggcatgcatgtatatgaataag
tgtttgtattgttattcagcttcttgctggggcatgcagttccctcattt
tcataggagaaatcaagaaagacacaaatgttattatctcagctcatgtc
tttgttttgcccttcaaacactgtattgactttaagttagaacagctggg
gatttataggctttaggtattttttaagttcacatcaccaaaatatttca
gcgtatttggcttactgttctttaagataactagatcatcttatctttta
tttgaaacagcacaataaaacaagtaaaacaccattttctctacttggca
taaatatttaatttatgctttcccagtcagtataaatgttcttcatcaat
caatgtaaaattgttattaaatactaaatgttatttaatacagtcccatg
ttaaatgttgggaaattttttcttcatgggttctctactattatttttgc
ctagaaatttcattttctaatcgttctcttattgcgtccgctcgaccggg
caggaaagacgcacaaaccagaattcttttcgcggcaaaggctttattgc
ttgtttctcaggaagatccgaaacggcaaaatggcgctgctttttataac
cgctgcgcttgacgtttccagcagtgatatgaacgtacacgctccgaatc
cgttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_41743612_41744724
seq2: B6Ng01-245I02.b_47_1144 (reverse)

seq1  CAGATATGACACTAGTTTTGACCAGAGAAAGAAATCTATCCTGGGATGAT  50
      |||||||||||||||  |||||||| ||||| ||||||| || |||||||
seq2  CAGATATGACACTAG--TTGACCAG-GAAAG-AATCTATTCT-GGATGAT  45

seq1  ACCAGCAAACCATTAAGCATCCAGGAGATTGAGCCCTGAGCCCAAGGAAC  100
        ||||||| || | ||||||||||||| |||| |||||||||||| |  
seq2  -GCAGCAAATCAATCAGCATCCAGGAGA-TGAG-CCTGAGCCCAAGAACA  92

seq1  AAAAATGCAGACTGTGGCATGAGTGGTACAAGGGTGCTTCAAGGGCCTCA  150
      |||||||||||||||||||||||| |||| |||||||||||| |||||||
seq2  AAAAATGCAGACTGTGGCATGAGT-GTAC-AGGGTGCTTCAA-GGCCTCA  139

seq1  TCAGGTAAGCTAGGGTGAAAAGTTTAGTCGTTTCATAAACTGTCATGTGA  200
      ||||   ||||||||||||||| |||||||||||||||||||||||||||
seq2  TCAG--TAGCTAGGGTGAAAAG-TTAGTCGTTTCATAAACTGTCATGTGA  186

seq1  CTTCAGGCAACTTCTTTATTTCCCTAAAACTCACACTCCTTTAAAATAGG  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTCAGGCAACTTCTTTATTTCCCTAAAACTCACACTCC-TTAAAATAGG  235

seq1  AGTAATAATTGGGTTCCTGAGAACATGCAAACAGCTCATACACACTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATAATTGGGTTCCTGAGAACATGCAAACAGCTCATACACACTTGTG  285

seq1  ATGCTCGACACACTTTCAAACAGATAAGAAAAAGTTCATTAATGCTAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCGACACACTTTCAAACAGATAAGAAAAAGTTCATTAATGCTAGGA  335

seq1  ATTATGAAGTAGGGTAACATTTATAACATCATTAAACACCTTTCTGAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAAGTAGGGTAACATTTATAACATCATTAAACACCTTTCTGAACC  385

seq1  ATAAGAGAAAGGTTGTTAGACAGGCAGTAGAAAATTGACATTTGAAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGAAAGGTTGTTAGACAGGCAGTAGAAAATTGACATTTGAAAGGA  435

seq1  CATTGGGAGGTGTCTCTACCACTCTACCACTCTGGGAGATTAAACCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGAGGTGTCTCTACCACTCTACCACTCTGGGAGATTAAACCTGTT  485

seq1  TAGGCACATGCATGAAGACATATTAATCCAAGACACAACTTAGCACTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACATGCATGAAGACATATTAATCCAAGACACAACTTAGCACTGGC  535

seq1  AAAACCAAGACTCTTGGTTCCTAAACCCTAATGCTTGCTGCAGAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAGACTCTTGGTTCCTAAACCCTAATGCTTGCTGCAGAAAAAAA  585

seq1  AAAAAAAACAAAAAAACAAAAAAACAACAAGCTCTCTATAACCAGTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACAAAAAAACAAAAAAACAACAAGCTCTCTATAACCAGTGGTT  635

seq1  ATATAGAGAGACGTAGAGAAGGGACAGGGGACAGAGTCGGAAGCTGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAGAGACGTAGAGAAGGGACAGGGGACAGAGTCGGAAGCTGAGCA  685

seq1  ACAGTTGAATGCAGTTCTCTTATTAAGCTGATTTGTGTCACCAGAGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGAATGCAGTTCTCTTATTAAGCTGATTTGTGTCACCAGAGCTTC  735

seq1  TGATTGCTGACAAAAGTTGTCTTAATTTACTATGCAGCCTTCTATGGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCTGACAAAAGTTGTCTTAATTTACTATGCAGCCTTCTATGGTAC  785

seq1  ACATTCTACCTTAAGAAGGCAGTCTGAGTAAACCCTTTAGAGTTTTCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTACCTTAAGAAGGCAGTCTGAGTAAACCCTTTAGAGTTTTCCCT  835

seq1  TTAGAAAAAAGTTTTAGATGAAAGGAATGCAGTGTTCACAAACTCTTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAAAGTTTTAGATGAAAGGAATGCAGTGTTCACAAACTCTTCAG  885

seq1  AGCGCAGTGGCTTTTCTGTAGAGTCACACCATGAGAGACTTGCTAACATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCAGTGGCTTTTCTGTAGAGTCACACCATGAGAGACTTGCTAACATC  935

seq1  AGTTCTCCGCATTTCTTTAACCAAAGCTTCTCTCATTAACGCTATAGCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCCGCATTTCTTTAACCAAAGCTTCTCTCATTAACGCTATAGCTT  985

seq1  CTTTCTCATTTTCTAAATTCCCACCACAGATGCCCAGCCCGATGTTGATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCATTTTCTAAATTCCCACCACAGATGCCCAGCCCGATGTTGATC  1035

seq1  TTTGTAGTGCAATTCATTATTCTGAAGCTGTCATCCAATTCCAGAACCGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGTGCAATTCATTATTCTGAAGCTGTCATCCAATTCCAGAACCGA  1085

seq1  AGCCAAGGAATTC  1113
      |||||||||||||
seq2  AGCCAAGGAATTC  1098


seq1: chr11_41574773_41575920
seq2: B6Ng01-245I02.g_64_1219

seq1  GAATTCCTTATCATGGATTGTCTCATAGCTCATCTCATGGTGAGAATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATCATGGATTGTCTCATAGCTCATCTCATGGTGAGAATAAG  50

seq1  CTGGTTACTTTTGACAGTTGGAAATGAAAGGAAGGAGATGCTTCCAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTACTTTTGACAGTTGGAAATGAAAGGAAGGAGATGCTTCCAAGCA  100

seq1  TAAATGGGAAAATGGGAGAGAAACAGGTAACAAACAGTGTGGTTAGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGGAAAATGGGAGAGAAACAGGTAACAAACAGTGTGGTTAGATAG  150

seq1  AGGAGGTGTGACCCTCACAGATGGGAACTCTGAATTTGAAGGATAATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGTGACCCTCACAGATGGGAACTCTGAATTTGAAGGATAATTTA  200

seq1  GCAAACTGACAGGGAGGCATCTGAGCCTTTTGATGACAGATTCATTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTGACAGGGAGGCATCTGAGCCTTTTGATGACAGATTCATTCACT  250

seq1  TTCCTTCCCATATCTCTTCCATTAGTTAAAATGTTGAAGGGACTGGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCCATATCTCTTCCATTAGTTAAAATGTTGAAGGGACTGGTTTG  300

seq1  CTCCCATCTCTTTTACTGTATATCCCTAGTCTCCACATGGTTGAATTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATCTCTTTTACTGTATATCCCTAGTCTCCACATGGTTGAATTTAA  350

seq1  TTACTAAACAGATATCAGGCCAATTGGAAGAGAGCTGATTGTAGATTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAACAGATATCAGGCCAATTGGAAGAGAGCTGATTGTAGATTGTT  400

seq1  AGGGGAACATTTGCACTGTAGCACCTTTGACTACAAATGAAGGAGCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAACATTTGCACTGTAGCACCTTTGACTACAAATGAAGGAGCAAAT  450

seq1  AATCAGATGATTTGTGTTTAGAATGAAAGGCATGCATGTATATGAATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGATGATTTGTGTTTAGAATGAAAGGCATGCATGTATATGAATAAG  500

seq1  TGTTTGTATTGTTATTCAGCTTCTTGCTGGGGCATGCAGTTCCCTCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTATTGTTATTCAGCTTCTTGCTGGGGCATGCAGTTCCCTCATTT  550

seq1  TCATAGGAGAAATCAAGAAAGACACAAATGTTATTATCTCAGCTCATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGAGAAATCAAGAAAGACACAAATGTTATTATCTCAGCTCATGTC  600

seq1  TTTGTTTTGCCCTTCAAACACTGTATTGACTTTAAGTTAGAACAGCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGCCCTTCAAACACTGTATTGACTTTAAGTTAGAACAGCTGGG  650

seq1  GATTTATAGGCTTTAGGTATTTTTTAAGTTCACATCACCAAAATATTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATAGGCTTTAGGTATTTTTTAAGTTCACATCACCAAAATATTTCA  700

seq1  GCGTATTTGGCTTACTGTTCTTTAAGATAACTAGATCATCTTATCTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTATTTGGCTTACTGTTCTTTAAGATAACTAGATCATCTTATCTTTTA  750

seq1  TTTGAAACAGCACAATAAAACAAGTAAAACACCATTTTCTCTACTTGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACAGCACAATAAAACAAGTAAAACACCATTTTCTCTACTTGGCA  800

seq1  TAAATA-TTAATTTATGCTTTCCCAGTCAGTATAAATGTTCTTCATCAAT  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTAATTTATGCTTTCCCAGTCAGTATAAATGTTCTTCATCAAT  850

seq1  CAATGTAAAATTGTTATTAAATACTAAATGTTA-TTAATACAGTCCCATG  898
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAATGTAAAATTGTTATTAAATACTAAATGTTATTTAATACAGTCCCATG  900

seq1  TTAAATGTTGGGAAA-TTTTTCTTCAT-GGTTCTCTACTATTATTTTTGC  946
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TTAAATGTTGGGAAATTTTTTCTTCATGGGTTCTCTACTATTATTTTTGC  950

seq1  CTAGAAATTTCATTTCCTAATCGTTCTCTTATTGCGTCCCGCTCGACC-G  995
      ||||||||||||||| ||||||||||||||||||||| |||||||||| |
seq2  CTAGAAATTTCATTTTCTAATCGTTCTCTTATTGCGT-CCGCTCGACCGG  999

seq1  GCAAGAAAGACGCAACAAACCAGAAT--CTTTCGCGGCAAAAGCTTTATT  1043
      ||| ||||||||| ||||||||||||   |||||||||||| ||||||||
seq2  GCAGGAAAGACGC-ACAAACCAGAATTCTTTTCGCGGCAAAGGCTTTATT  1048

seq1  GCTTGTTTCTCAGGAAGATTCCGAACCGGGAAAATGGCGCTGC-TTTTAT  1092
      |||||||||||||||||| |||||| ||| ||||||||||||| ||||||
seq2  GCTTGTTTCTCAGGAAGA-TCCGAAACGGCAAAATGGCGCTGCTTTTTAT  1097

seq1  AACCCGCTGCG--TGACGTTT-CAGCACCTGATATG-ACGTGACA-GCTC  1137
      || ||||||||  |||||||| |||||  ||||||| |||| ||| ||||
seq2  AA-CCGCTGCGCTTGACGTTTCCAGCA-GTGATATGAACGT-ACACGCTC  1144

seq1  CG-ATTCGTTGC  1148
      || || ||||||
seq2  CGAATCCGTTGC  1156


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