BAC Information

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BAC

Clone NameB6Ng01-245M06
Chromosome11 (Build37)
Map Location 51,127,973 - 51,321,079
singlet/doubletdoublet
Overlap geneCol23a1
Upstream geneCanx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4
Downstream geneAgxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245M06.bB6Ng01-245M06.g
ACCGA054564GA054565
length988852
definitionB6Ng01-245M06.b B6Ng01-245M06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,127,973 - 51,128,961)(51,320,229 - 51,321,079)
sequence
gaattcctgggctcaaacaaccctcctgcctccgatgccagagcgactga
gtagttgggactctagattcctgccacactcagcccaattctctcttttt
tttcttattaattaattaatttatttattaattaatttatttattattgt
tttacttattcactttgtaggctcagctcaattctttaaaaaaaatattt
atttttatgattttaaatcgtgaggtgaaagatattttccaggccatgaa
aagtgttctcaataggttttagattcaagctgttgagcctgggctgctcc
cgccagaggccgcttggccttggctggggccccatagctgtgaaacccca
acctggtactgttaaagaaaaaaggttttgagtcttgtaagatgacccat
tgggtaaattttctgctatataagcacagggcctgagtttggagcttctt
cacccgtgttagagcctagtgtgtcacccacacctgtaaccccagcaccc
aacacccggcactccccagccagccagtctaaccaaaatgttgagctgct
gtctcagtgagaaaattaaggcaaagatacctaatgttctctggtttcta
tacatgcacacatgtgtgtagcacatgtgcgcgtactcgattgtgcacac
acactctcacatacatgcacacaaggggtccttgttaaagcattgaatgg
cagcatcaattctaaataaatcatagcaagtggggttttatagccaagga
ccaaggtggacagtcagttagatcaagtattaaccaaaagggaggtctgg
ttaaactcaccagacgggactagacttctgctgaaaataggccagggtga
ccagatatcatctgggggctgatggagagtgaagaaccccactaggattc
tgggatggtcagataccaaagctgggatgggtgttggggggtgcgtgcta
aagtggcataacaggttgtgtctagccggtaatttaca
gaattcctcacaggctcccacccttgtcctgcccagatggttctagaaaa
gggcaggtgaggtgcatggctggaggtatcatggaggacgtgggtttagg
gagtgacagtcagagaaaaggctggccactcagtatgtacagtctggttc
cgggccttctggtgcaagacttgggactcctggctctttgggtcaggggg
acagagctctccaaggggaaggggctcacactctttaacctgtgctcctc
aggagtcggggagagcttcagcaggctctggggtgatcggtttggatatg
ccaatgactgaagggcttcctggggaacaagggaagttagttcccctaac
aggcaactgtgaggaggaggttcagtaaggcccactgccacttactgctc
tttaccccatctctacagaggacttttgcttaagtttgtctgcatatctc
taactcagggcctttgtacaggccacatctgcctgggaccttcctgctcc
cgtacattttgaccacctaaaggattctgtccttagggggtctgtgtcac
acagtccagcttattttcctcttattacttatctttactaaagcctttat
ttgttttacgtgcttagtttttcttttcttttcttttttcctaagacagg
gtttctctgtgtagccctggctgtcctggaactcactctgtagaccaggc
tggcctcgaacttagaaatctgcctgcctctgtcttccaagtgctgggat
taaaggcgtgtgccaccatcaaaagctctctctctctctctctctctctc
tctctctctctctctctgtgtgtgagtgacgtgtgtgtgtgagataaaag
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_51127973_51128961
seq2: B6Ng01-245M06.b_46_1033

seq1  GAATTCCTGGGCTCAAACAACCCTCCTGCCTCCGATGCCAGAGCGACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGCTCAAACAACCCTCCTGCCTCCGATGCCAGAGCGACTGA  50

seq1  GTAGTTGGGACTCTAGATTCCTGCCACACTCAGCCCAATTCTCTCTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGGGACTCTAGATTCCTGCCACACTCAGCCCAATTCTCTCTTTTT  100

seq1  TTTCTTATTAATTAATTAATTTATTTATTAATTAATTTATTTATTATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATTAATTAATTAATTTATTTATTAATTAATTTATTTATTATTGT  150

seq1  TTTACTTATTCACTTTGTAGGCTCAGCTCAATTCTTTAAAAAAAATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTATTCACTTTGTAGGCTCAGCTCAATTCTTTAAAAAAAATATTT  200

seq1  ATTTTTATGATTTTAAATCGTGAGGTGAAAGATATTTTCCAGGCCATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATGATTTTAAATCGTGAGGTGAAAGATATTTTCCAGGCCATGAA  250

seq1  AAGTGTTCTCAATAGGTTTTAGATTCAAGCTGTTGAGCCTGGGCTGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTCTCAATAGGTTTTAGATTCAAGCTGTTGAGCCTGGGCTGCTCC  300

seq1  CGCCAGAGGCCGCTTGGCCTTGGCTGGGGCCCCATAGCTGTGAAACCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGAGGCCGCTTGGCCTTGGCTGGGGCCCCATAGCTGTGAAACCCCA  350

seq1  ACCTGGTACTGTTAAAGAAAAAAGGTTTTGAGTCTTGTAAGATGACCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTACTGTTAAAGAAAAAAGGTTTTGAGTCTTGTAAGATGACCCAT  400

seq1  TGGGTAAATTTTCTGCTATATAAGCACAGGGCCTGAGTTTGGAGCTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAATTTTCTGCTATATAAGCACAGGGCCTGAGTTTGGAGCTTCTT  450

seq1  CACCCGTGTTAGAGCCTAGTGTGTCACCCACACCTGTAACCCCAGCACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCGTGTTAGAGCCTAGTGTGTCACCCACACCTGTAACCCCAGCACCC  500

seq1  AACACCCGGCACTCCCCAGCCAGCCAGTCTAACCAAAATGTTGAGCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCGGCACTCCCCAGCCAGCCAGTCTAACCAAAATGTTGAGCTGCT  550

seq1  GTCTCAGTGAGAAAATTAAGGCAAAGATACCTAATGTTCTCTGGTTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGTGAGAAAATTAAGGCAAAGATACCTAATGTTCTCTGGTTTCTA  600

seq1  TACATGCACACATGTGTGTAGCACATGTGCGCGTACTCGATTGTGCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCACACATGTGTGTAGCACATGTGCGCGTACTCGATTGTGCACAC  650

seq1  ACACTCTCACATACATGCACACAAGGGGTCCTTGTTAAAGCATTGAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTCACATACATGCACACAAGGGGTCCTTGTTAAAGCATTGAATGG  700

seq1  CAGCATCAATTCTAAATAAATCATAGCAAGTGGGGTTTTATAGCCAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCAATTCTAAATAAATCATAGCAAGTGGGGTTTTATAGCCAAGGA  750

seq1  CCAAGGTGGACAGTCAG-TAGATCAAGTATTAACCAAAAGGGAGGTCTGG  799
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCAAGGTGGACAGTCAGTTAGATCAAGTATTAACCAAAAGGGAGGTCTGG  800

seq1  TTAAACTCACCAGACGGGACTAGACTTCTGCTGAAAATAGGCCAGGGTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTCACCAGACGGGACTAGACTTCTGCTGAAAATAGGCCAGGGTGA  850

seq1  CCAGATATCATCTGGGGGCTGATGGAGAGTGAAGAACCCCACTAGGATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATATCATCTGGGGGCTGATGGAGAGTGAAGAACCCCACTAGGATTC  900

seq1  TGGAATGGTCAGATACCAAGGCTGGGATGGGTGTT-GGGGGTGCGTGCTA  948
      ||| ||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  TGGGATGGTCAGATACCAAAGCTGGGATGGGTGTTGGGGGGTGCGTGCTA  950

seq1  AAGTGGCATAACAGGGTTTGTGTCTAG-CGGTAAATTTTACA  989
      |||||||||||||||  |||||||||| ||||||  ||||||
seq2  AAGTGGCATAACAGG--TTGTGTCTAGCCGGTAA--TTTACA  988

seq1: chr11_51320229_51321079
seq2: B6Ng01-245M06.g_67_918 (reverse)

seq1  CCCTTATATCTCACACACACAC-ACACACACACACAGAGAGAGAGAGAGA  49
      ||||| ||||||||||||||||  ||| ||||||||||||||||||||||
seq2  CCCTTTTATCTCACACACACACGTCACTCACACACAGAGAGAGAGAGAGA  50

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGCTTTTGATGGTGGCACACGCCTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGCTTTTGATGGTGGCACACGCCTT  100

seq1  TAATCCCAGCACTTGGAAGACAGAGGCAGGCAGATTTCTAAGTTCGAGGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCACTTGGAAGACAGAGGCAGGCAGATTTCTAAGTTCGAGGC  150

seq1  CAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAA  200

seq1  ACCCTGTCTTAGGAAAAAAGAAAAGAAAAGAAAAACTAAGCACGTAAAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTTAGGAAAAAAGAAAAGAAAAGAAAAACTAAGCACGTAAAAC  250

seq1  AAATAAAGGCTTTAGTAAAGATAAGTAATAAGAGGAAAATAAGCTGGACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGGCTTTAGTAAAGATAAGTAATAAGAGGAAAATAAGCTGGACT  300

seq1  GTGTGACACAGACCCCCTAAGGACAGAATCCTTTAGGTGGTCAAAATGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACACAGACCCCCTAAGGACAGAATCCTTTAGGTGGTCAAAATGTA  350

seq1  CGGGAGCAGGAAGGTCCCAGGCAGATGTGGCCTGTACAAAGGCCCTGAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGCAGGAAGGTCCCAGGCAGATGTGGCCTGTACAAAGGCCCTGAGT  400

seq1  TAGAGATATGCAGACAAACTTAAGCAAAAGTCCTCTGTAGAGATGGGGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATATGCAGACAAACTTAAGCAAAAGTCCTCTGTAGAGATGGGGTA  450

seq1  AAGAGCAGTAAGTGGCAGTGGGCCTTACTGAACCTCCTCCTCACAGTTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGTAAGTGGCAGTGGGCCTTACTGAACCTCCTCCTCACAGTTGC  500

seq1  CTGTTAGGGGAACTAACTTCCCTTGTTCCCCAGGAAGCCCTTCAGTCATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGGGGAACTAACTTCCCTTGTTCCCCAGGAAGCCCTTCAGTCATT  550

seq1  GGCATATCCAAACCGATCACCCCAGAGCCTGCTGAAGCTCTCCCCGACTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATCCAAACCGATCACCCCAGAGCCTGCTGAAGCTCTCCCCGACTC  600

seq1  CTGAGGAGCACAGGTTAAAGAGTGTGAGCCCCTTCCCCTTGGAGAGCTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGCACAGGTTAAAGAGTGTGAGCCCCTTCCCCTTGGAGAGCTCT  650

seq1  GTCCCCCTGACCCAAAGAGCCAGGAGTCCCAAGTCTTGCACCAGAAGGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCTGACCCAAAGAGCCAGGAGTCCCAAGTCTTGCACCAGAAGGCC  700

seq1  CGGAACCAGACTGTACATACTGAGTGGCCAGCCTTTTCTCTGACTGTCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACCAGACTGTACATACTGAGTGGCCAGCCTTTTCTCTGACTGTCAC  750

seq1  TCCCTAAACCCACGTCCTCCATGATACCTCCAGCCATGCACCTCACCTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAACCCACGTCCTCCATGATACCTCCAGCCATGCACCTCACCTGC  800

seq1  CCTTTTCTAGAACCATCTGGGCAGGACAAGGGTGGGAGCCTGTGAGGAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTAGAACCATCTGGGCAGGACAAGGGTGGGAGCCTGTGAGGAAT  850

seq1  TC  851
      ||
seq2  TC  852