BAC Information

Click to search

BAC

Clone NameB6Ng01-246O07
Chromosome11 (Build37)
Map Location 68,444,191 - 68,555,813
singlet/doubletdoublet
Overlap geneMyh10
Upstream geneGas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42
Downstream geneNdel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246O07.bB6Ng01-246O07.g
ACCGA055381GA055382
length1,1731,088
definitionB6Ng01-246O07.b B6Ng01-246O07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,444,191 - 68,445,363)(68,554,738 - 68,555,813)
sequence
gaattctcttacgtgccacttggtcagaagcaggtcacttctgtatctgt
tgaattttgaaatgtctgtaccctttgaatcagcacttctaccacctaat
tagaagaaatagcaggatgtttggccaaagaaccaatcacaaacgtagtc
tttcatgcatccatttctatcctaactggatgtccactatggtccagaca
caatgaatgtacatcagggacagcacagaaaacggctttactttgtcttc
attgacttttgggagtccttctctcctaagtttagaactgcaggcatgtg
ctataccacacatgggtgactgggagaaatgtcttcctttaaaaaagtgg
gaacaccagtcagaggaaaccgaatcaaaacaaatgaccaacctcactaa
taaatgactaaacagaatacagccaggcatattcacagtattgctgtgag
aatactaattcacgataagtgctgggagaaaaatcctcaagacagcatat
tagtgggaaggaaaaaaaaagaaactcaaatatcccttgagaaagaagtc
atttggaataaatatattcattctaaggctgggcatggaggcacatcttg
tgatctaggaaaactaagacaggaagattgtgaattcaaggccagcctag
gctacagtgagactctgagatggctcagagaataaaggtgcttgctgcca
agcctgatgacccgagttcaatccctggggctcacatgggttccaccgaa
ggagagaaccacctcccataagttctacccaattgcacacccatggcatg
gcttgtgtgcattcagacatatgaaagttaaattaaatatatatgcacac
gtgtgtatggatacatagctttacattaatgtgggttattatgtatcttt
ttttaaatgagatatttccatacagattagcagagctaattccccaaaga
cataaatttaaatcttaaaaaaaattatacaactttgtaaaaaaaaaaaa
ttgtaacatgttagtttcttaaaggtaccaagccaccaatgatacattat
gcacaccgcatattaagagggccaacgttccagaaggaaacctccaccag
attggtagcagatcattcccaagccagaaattcgaactcgaaggaacgcc
taagagcttgcttttctgtatgg
gaattctctgaaagagttgagacagacactggagggagaaacctgagaag
ggccagccatcttcatatgccaggtaccttctccaagacaactaagaact
agcagatgagaagaccagaaagcatctaggcagatggagagacacatgca
atagcaccaagcagaaaaaagcttggtatgttcccagacctgctgactga
agatggagggaggaggttgaaaattttttcatatgggtcacatatcagat
ctcctgcatatcagatatttatattacagttcataacagtagcaaaatta
cagttgtgaagtagcaatgaaaatacttttatggttgggagccactacaa
cctgaggaactgtataaaagggtcgtagcattaggaaggttgagacccac
tgctctagaagagtagcccgtgcccttaactgctgagccacctctgcagc
aactaaagtattatttcttaatagccataaaacagtttactctttttgtt
gttaactttattcaaagtagtgtttcactgctaatctattggctgttggt
tgcaagtaggtaaattttttttattatgctcaagaaataagcttttcatt
tagcctgatgatgatttgttttgaaaaccattatgactgttactgctcat
cttcgtgtctctgtagttgcccaagctcttgctcccatctcatttacata
actgtacttcaatacataagcttatgtctgaggcaactcccatactgtca
agtctcatggagctctgctatatgaaatgctgcttttggggccaaaaaga
tagcccaatgggtaaaaagcttggtaagggccagagtttgaaacccagaa
cctaaagtctgtaatctttcaatgacgatacagtggttaagacctttgaa
ctatgggaataagtatgatcttgtttagatttaaatcttttaccatgaga
cactgagttgcccctctatgtagctttggttttctaacttcacggcaaca
ctggcagtttagagagactttagttgaaagaaattagttcaccatggtat
tgtccttttgaaggggatgtttgttgtgatgcaatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_68444191_68445363
seq2: B6Ng01-246O07.b_51_1223

seq1  GAATTCTCTTACGTGCCACTTGGTCAGAAGCAGGTCACTTCTGTATCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTACGTGCCACTTGGTCAGAAGCAGGTCACTTCTGTATCTGT  50

seq1  TGAATTTTGAAATGTCTGTACCCTTTGAATCAGCACTTCTACCACCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTGAAATGTCTGTACCCTTTGAATCAGCACTTCTACCACCTAAT  100

seq1  TAGAAGAAATAGCAGGATGTTTGGCCAAAGAACCAATCACAAACGTAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAAATAGCAGGATGTTTGGCCAAAGAACCAATCACAAACGTAGTC  150

seq1  TTTCATGCATCCATTTCTATCCTAACTGGATGTCCACTATGGTCCAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCATCCATTTCTATCCTAACTGGATGTCCACTATGGTCCAGACA  200

seq1  CAATGAATGTACATCAGGGACAGCACAGAAAACGGCTTTACTTTGTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAATGTACATCAGGGACAGCACAGAAAACGGCTTTACTTTGTCTTC  250

seq1  ATTGACTTTTGGGAGTCCTTCTCTCCTAAGTTTAGAACTGCAGGCATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTTTTGGGAGTCCTTCTCTCCTAAGTTTAGAACTGCAGGCATGTG  300

seq1  CTATACCACACATGGGTGACTGGGAGAAATGTCTTCCTTTAAAAAAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCACACATGGGTGACTGGGAGAAATGTCTTCCTTTAAAAAAGTGG  350

seq1  GAACACCAGTCAGAGGAAACCGAATCAAAACAAATGACCAACCTCACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCAGTCAGAGGAAACCGAATCAAAACAAATGACCAACCTCACTAA  400

seq1  TAAATGACTAAACAGAATACAGCCAGGCATATTCACAGTATTGCTGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGACTAAACAGAATACAGCCAGGCATATTCACAGTATTGCTGTGAG  450

seq1  AATACTAATTCACGATAAGTGCTGGGAGAAAAATCCTCAAGACAGCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAATTCACGATAAGTGCTGGGAGAAAAATCCTCAAGACAGCATAT  500

seq1  TAGTGGGAAGGAAAAAAAAAGAAACTCAAATATCCCTTGAGAAAGAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGAAGGAAAAAAAAAGAAACTCAAATATCCCTTGAGAAAGAAGTC  550

seq1  ATTTGGAATAAATATATTCATTCTAAGGCTGGGCATGGAGGCACATCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAATAAATATATTCATTCTAAGGCTGGGCATGGAGGCACATCTTG  600

seq1  TGATCTAGGAAAACTAAGACAGGAAGATTGTGAATTCAAGGCCAGCCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAGGAAAACTAAGACAGGAAGATTGTGAATTCAAGGCCAGCCTAG  650

seq1  GCTACAGTGAGACTCTGAGATGGCTCAGAGAATAAAGGTGCTTGCTGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTGAGACTCTGAGATGGCTCAGAGAATAAAGGTGCTTGCTGCCA  700

seq1  AGCCTGATGACCCGAGTTCAATCCCTGGGGCTCACATGGGTTCCACCGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGATGACCCGAGTTCAATCCCTGGGGCTCACATGGGTTCCACCGAA  750

seq1  GGAGAGAACCACCTCCCATAAGTTCTACCCAATTGCACACCCATGGCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAACCACCTCCCATAAGTTCTACCCAATTGCACACCCATGGCATG  800

seq1  GCTTGTGTGCATTCAGACATATGAAAGTTAAATTAAATATATATGCACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGTGCATTCAGACATATGAAAGTTAAATTAAATATATATGCACAC  850

seq1  GTGTGTATGGATACATAGCTTTACATTAATGTGGGTTATTATGTATC-TT  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGTGTATGGATACATAGCTTTACATTAATGTGGGTTATTATGTATCTTT  900

seq1  TTTTAAATGAGATATTTCCATACAGATTAGCAGAGCTAATTCCCC-AAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTTAAATGAGATATTTCCATACAGATTAGCAGAGCTAATTCCCCAAAGA  950

seq1  CATAAATTTAAATCTTAAAAAAAATTATACAAC-TTGT-AAAAAAAAAAA  996
      ||||||||||||||||||||||||||||||||| |||| |||||||||||
seq2  CATAAATTTAAATCTTAAAAAAAATTATACAACTTTGTAAAAAAAAAAAA  1000

seq1  TTGTAACATGTTAGTTTCTTTAAAGTACCAAAGCACCAAATGATACA-TA  1045
      |||||||||||||||||||| || |||||||  |||| ||||||||| ||
seq2  TTGTAACATGTTAGTTTCTTAAAGGTACCAAGCCACC-AATGATACATTA  1049

seq1  TGCACA-CGCATA-TAAGAGGGCAAACGTTCCAGAA-GAAAC--TCAACA  1090
      |||||| |||||| ||||||||| |||||||||||| |||||   || ||
seq2  TGCACACCGCATATTAAGAGGGCCAACGTTCCAGAAGGAAACCTCCACCA  1099

seq1  GATGGGTAGCAGGAATCATTCCCAGGCAGGAGATTTAGAACTCGAAGGGA  1140
      ||| ||||||||  |||||||||| ||  || | || |||||||||||  
seq2  GATTGGTAGCAG--ATCATTCCCAAGCCAGA-AATTCGAACTCGAAGG--  1144

seq1  ACCGCCAAAAGAAGCTTTGCTTTTTCTGTATGG  1173
      | |||| ||   ||| |||| ||||||||||||
seq2  AACGCCTAA--GAGC-TTGC-TTTTCTGTATGG  1173

seq1: chr11_68554738_68555813
seq2: B6Ng01-246O07.g_67_1154 (reverse)

seq1  AGCA-TGCATCACAAC-AACATCCCCTTCAAA--GAC-ATACCATGGTGA  45
      |||| ||||||||||| |||||||||||||||  ||| ||||||||||||
seq2  AGCATTGCATCACAACAAACATCCCCTTCAAAAGGACAATACCATGGTGA  50

seq1  CTTAATTTTCTTTC-ACT-AAGTCTCCTTCCTAACTGCCAGTGTTGCCGT  93
        ||| |||||||| ||| |||||||  ||  ||||||||||||||||||
seq2  ACTAA-TTTCTTTCAACTAAAGTCTC--TCTAAACTGCCAGTGTTGCCGT  97

seq1  G-AGTTAGAAA--CCAAGCTTAACATAGAGGGGC-ACTCAGTGTCTCATG  139
      | |||||||||  | |||||  |||||||||||| |||||||||||||||
seq2  GAAGTTAGAAAACCAAAGCT--ACATAGAGGGGCAACTCAGTGTCTCATG  145

seq1  GT-AAAGATTTAAATCTAAAC-AGATCATACTTATT-CCATAGTTC-AAG  185
      || |||||||||||||||||| |||||||||||||| ||||||||| |||
seq2  GTAAAAGATTTAAATCTAAACAAGATCATACTTATTCCCATAGTTCAAAG  195

seq1  GTCTTAACCACTGTATCGTCATTG-AAGATTACAGAC-TTAGGTTCTGGG  233
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GTCTTAACCACTGTATCGTCATTGAAAGATTACAGACTTTAGGTTCTGGG  245

seq1  TTTCAAACTCTGGCCCTTACCAAGCTTTTTACCCATTGGGCTATCTTTTT  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACTCTGGCCCTTACCAAGCTTTTTACCCATTGGGCTATCTTTTT  295

seq1  GGCCCCAAAAGCAGCATTTCATATAGCAGAGCTCCATGAGACTTGACAGT  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAAAAGCAGCATTTCATATAGCAGAGCTCCATGAGACTTGACAGT  345

seq1  ATGGGAGTTGCCTCAGACATAAGCTTATGTATTGAAGTACAGTTATGTAA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGTTGCCTCAGACATAAGCTTATGTATTGAAGTACAGTTATGTAA  395

seq1  ATGAGATGGGAGCAAGAGCTTGGGCAACTACAGAGACACGAAGATGAGCA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGGGAGCAAGAGCTTGGGCAACTACAGAGACACGAAGATGAGCA  445

seq1  GTAACAGTCATAATGGTTTTCAAAACAAATCATCATCAGGCTAAATGAAA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGTCATAATGGTTTTCAAAACAAATCATCATCAGGCTAAATGAAA  495

seq1  AGCTTATTTCTTGAGCATAATAAAAAAAATTTACCTACTTGCAACCAACA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATTTCTTGAGCATAATAAAAAAAATTTACCTACTTGCAACCAACA  545

seq1  GCCAATAGATTAGCAGTGAAACACTACTTTGAATAAAGTTAACAACAAAA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATAGATTAGCAGTGAAACACTACTTTGAATAAAGTTAACAACAAAA  595

seq1  AGAGTAAACTGTTTTATGGCTATTAAGAAATAATACTTTAGTTGCTGCAG  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAACTGTTTTATGGCTATTAAGAAATAATACTTTAGTTGCTGCAG  645

seq1  AGGTGGCTCAGCAGTTAAGGGCACGGGCTACTCTTCTAGAGCAGTGGGTC  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTCAGCAGTTAAGGGCACGGGCTACTCTTCTAGAGCAGTGGGTC  695

seq1  TCAACCTTCCTAATGCTACGACCCTTTTATACAGTTCCTCAGGTTGTAGT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTTCCTAATGCTACGACCCTTTTATACAGTTCCTCAGGTTGTAGT  745

seq1  GGCTCCCAACCATAAAAGTATTTTCATTGCTACTTCACAACTGTAATTTT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCAACCATAAAAGTATTTTCATTGCTACTTCACAACTGTAATTTT  795

seq1  GCTACTGTTATGAACTGTAATATAAATATCTGATATGCAGGAGATCTGAT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGTTATGAACTGTAATATAAATATCTGATATGCAGGAGATCTGAT  845

seq1  ATGTGACCCATATGAAAAAATTTTCAACCTCCTCCCTCCATCTTCAGTCA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACCCATATGAAAAAATTTTCAACCTCCTCCCTCCATCTTCAGTCA  895

seq1  GCAGGTCTGGGAACATACCAAGCTTTTTTCTGCTTGGTGCTATTGCATGT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCTGGGAACATACCAAGCTTTTTTCTGCTTGGTGCTATTGCATGT  945

seq1  GTCTCTCCATCTGCCTAGATGCTTTCTGGTCTTCTCATCTGCTAGTTCTT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCATCTGCCTAGATGCTTTCTGGTCTTCTCATCTGCTAGTTCTT  995

seq1  AGTTGTCTTGGAGAAGGTACCTGGCATATGAAGATGGCTGGCCCTTCTCA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCTTGGAGAAGGTACCTGGCATATGAAGATGGCTGGCCCTTCTCA  1045

seq1  GGTTTCTCCCTCCAGTGTCTGTCTCATCTCTTTCAGAGAATTC  1076
      |||||||||||||||||||||||||| ||||||||||||||||
seq2  GGTTTCTCCCTCCAGTGTCTGTCTCAACTCTTTCAGAGAATTC  1088